=> Building science/py-pyteomics@py36 Started : Friday, 8 MAR 2019 at 07:22:10 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/science/py-pyteomics XDG_CONFIG_HOME=/construction/science/py-pyteomics HOME=/construction/science/py-pyteomics TMPDIR="/tmp" PATH=/construction/science/py-pyteomics/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-pyteomics XDG_CONFIG_HOME=/construction/science/py-pyteomics HOME=/construction/science/py-pyteomics TMPDIR="/tmp" PATH=/construction/science/py-pyteomics/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-pyteomics/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pyteomics" EXAMPLESDIR="share/examples/pyteomics" DATADIR="share/pyteomics" WWWDIR="www/pyteomics" ETCDIR="etc/pyteomics" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pyteomics DOCSDIR=/usr/local/share/doc/pyteomics EXAMPLESDIR=/usr/local/share/examples/pyteomics WWWDIR=/usr/local/www/pyteomics ETCDIR=/usr/local/etc/pyteomics -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> NOTICE: The pyteomics port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License APACHE20 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-pyteomics-3.5.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> py36-pyteomics-3.5.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-pyteomics-3.5.1_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> NOTICE: The pyteomics port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py36-pyteomics-3.5.1_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> NOTICE: The pyteomics port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py36-pyteomics-3.5.1_1 for building => SHA256 Checksum OK for pyteomics-3.5.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> NOTICE: The pyteomics port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py36-pyteomics-3.5.1_1 for building ===> Extracting for py36-pyteomics-3.5.1_1 => SHA256 Checksum OK for pyteomics-3.5.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-pyteomics-3.5.1_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-pyteomics-3.5.1_1 depends on package: py36-setuptools>0 - not found ===> Installing existing package /packages/All/py36-setuptools-40.8.0.txz Installing py36-setuptools-40.8.0... `-- Installing python36-3.6.8... | `-- Installing expat-2.2.6_1... | `-- Extracting expat-2.2.6_1: .......... done | `-- Installing gettext-runtime-0.19.8.1_2... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done | `-- Installing libffi-3.2.1_3... | `-- Extracting libffi-3.2.1_3: .......... done | `-- Installing libressl-2.8.3... | `-- Extracting libressl-2.8.3: .......... done | `-- Installing ncurses-6.1.20190112... | `-- Extracting ncurses-6.1.20190112: .......... done | `-- Installing readline-7.0.5... | `-- Extracting readline-7.0.5: .......... done `-- Extracting python36-3.6.8: .......... done Extracting py36-setuptools-40.8.0: .......... done Message from python36-3.6.8: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-40.8.0: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* ===> py36-pyteomics-3.5.1_1 depends on package: py36-setuptools>0 - found ===> Returning to build of py36-pyteomics-3.5.1_1 ===> py36-pyteomics-3.5.1_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-pyteomics-3.5.1_1 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-pyteomics-3.5.1_1 running build running build_py creating build creating build/lib creating build/lib/pyteomics copying pyteomics/parser.py -> build/lib/pyteomics copying pyteomics/ms1.py -> build/lib/pyteomics copying pyteomics/mzid.py -> build/lib/pyteomics copying pyteomics/xml.py -> build/lib/pyteomics copying pyteomics/mzxml.py -> build/lib/pyteomics copying pyteomics/mgf.py -> build/lib/pyteomics copying pyteomics/mzml.py -> build/lib/pyteomics copying pyteomics/achrom.py -> build/lib/pyteomics copying pyteomics/fasta.py -> build/lib/pyteomics copying pyteomics/electrochem.py -> build/lib/pyteomics copying pyteomics/pepxml.py -> build/lib/pyteomics copying pyteomics/tandem.py -> build/lib/pyteomics copying pyteomics/pylab_aux.py -> build/lib/pyteomics copying pyteomics/protxml.py -> build/lib/pyteomics copying pyteomics/_schema_defaults.py -> build/lib/pyteomics copying pyteomics/__init__.py -> build/lib/pyteomics creating build/lib/pyteomics/mass copying pyteomics/mass/unimod.py -> build/lib/pyteomics/mass copying pyteomics/mass/__init__.py -> build/lib/pyteomics/mass copying pyteomics/mass/mass.py -> build/lib/pyteomics/mass creating build/lib/pyteomics/openms copying pyteomics/openms/featurexml.py -> build/lib/pyteomics/openms copying pyteomics/openms/trafoxml.py -> build/lib/pyteomics/openms copying pyteomics/openms/__init__.py -> build/lib/pyteomics/openms creating build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/math.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/file_helpers.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/__init__.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/constants.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/structures.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/patch.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/target_decoy.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/utils.py -> build/lib/pyteomics/auxiliary -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-pyteomics-3.5.1_1 depends on package: py36-lxml>=0 - not found ===> Installing existing package /packages/All/py36-lxml-4.1.1.txz Installing py36-lxml-4.1.1... `-- Installing libxml2-2.9.8... `-- Extracting libxml2-2.9.8: .......... done `-- Installing libxslt-1.1.32... | `-- Installing libgcrypt-1.8.4_1... | | `-- Installing libgpg-error-1.35... | | `-- Extracting libgpg-error-1.35: .......... done | `-- Extracting libgcrypt-1.8.4_1: .......... done `-- Extracting libxslt-1.1.32: .......... done Extracting py36-lxml-4.1.1: .......... done ===> py36-pyteomics-3.5.1_1 depends on package: py36-lxml>=0 - found ===> Returning to build of py36-pyteomics-3.5.1_1 ===> py36-pyteomics-3.5.1_1 depends on package: py36-matplotlib>=0 - not found ===> Installing existing package /packages/All/py36-matplotlib-2.1.2_5.txz Installing py36-matplotlib-2.1.2_5... `-- Installing fontconfig-2.12.6,1... | `-- Installing freetype2-2.9.1... | `-- Extracting freetype2-2.9.1: .......... done `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded `-- Installing png-1.6.36... `-- Extracting png-1.6.36: .......... done `-- Installing py36-cycler-0.10.0... | `-- Installing py36-six-1.12.0... | `-- Extracting py36-six-1.12.0: .......... done `-- Extracting py36-cycler-0.10.0: .......... done `-- Installing py36-dateutil-2.7.3... `-- Extracting py36-dateutil-2.7.3: .......... done `-- Installing py36-numpy-1.16.1,1... | `-- Installing gcc5-5.5.0_6... | | `-- Installing binutils-2.32,1... | | `-- Extracting binutils-2.32,1: .......... done | | `-- Installing gmp-6.1.2_1... | | `-- Extracting gmp-6.1.2_1: .......... done | | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | | `-- Extracting mpc-1.1.0_2: ......... done | `-- Extracting gcc5-5.5.0_6: .......... done | `-- Installing openblas-0.2.20_7,1... | `-- Extracting openblas-0.2.20_7,1: ......... done | `-- Installing suitesparse-5.2.0_2... | | `-- Installing lapack-3.5.0_6... | | `-- Installing blas-3.5.0_5... | | `-- Extracting blas-3.5.0_5: ....... done | | `-- Extracting lapack-3.5.0_6: .......... done | | `-- Installing metis-5.1.0_7... | | `-- Extracting metis-5.1.0_7: .......... done | `-- Extracting suitesparse-5.2.0_2: .......... done `-- Extracting py36-numpy-1.16.1,1: .......... done `-- Installing py36-pyparsing-2.3.1... `-- Extracting py36-pyparsing-2.3.1: .......... done `-- Installing py36-pytz-2018.9,1... `-- Extracting py36-pytz-2018.9,1: .......... done `-- Installing py36-tkinter-3.6.8_6... | `-- Installing tcl86-8.6.9_1... | `-- Extracting tcl86-8.6.9_1: .......... done | `-- Installing tk86-8.6.9_1... | | `-- Installing libX11-1.6.7,1... | | `-- Installing libXau-1.0.8_5... | | `-- Extracting libXau-1.0.8_5: .......... done | | `-- Installing libXdmcp-1.1.2_2... | | | `-- Installing xorgproto-2018.4... | | | `-- Extracting xorgproto-2018.4: .......... done | | `-- Extracting libXdmcp-1.1.2_2: ......... done | | `-- Installing libxcb-1.13.1... | | | `-- Installing libpthread-stubs-0.4... | | | `-- Extracting libpthread-stubs-0.4: .... done | | `-- Extracting libxcb-1.13.1: .......... done | | `-- Extracting libX11-1.6.7,1: .......... done | | `-- Installing libXScrnSaver-1.2.3_2... | | `-- Installing libXext-1.3.3_3,1... | | `-- Extracting libXext-1.3.3_3,1: .......... done | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done | | `-- Installing libXft-2.3.2_3... | | `-- Installing libXrender-0.9.10_2... | | `-- Extracting libXrender-0.9.10_2: .......... done | | `-- Extracting libXft-2.3.2_3: .......... done | `-- Extracting tk86-8.6.9_1: .......... done `-- Extracting py36-tkinter-3.6.8_6: ........ done `-- Installing py36-tornado-5.1.1... `-- Extracting py36-tornado-5.1.1: .......... done Extracting py36-matplotlib-2.1.2_5: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from gcc5-5.5.0_6: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 7 or newer instead.. Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-pyteomics-3.5.1_1 depends on package: py36-matplotlib>=0 - found ===> Returning to build of py36-pyteomics-3.5.1_1 ===> py36-pyteomics-3.5.1_1 depends on package: py36-numpy>0 - found ===> py36-pyteomics-3.5.1_1 depends on package: py36-setuptools>0 - found ===> py36-pyteomics-3.5.1_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-pyteomics-3.5.1_1 ===> Generating temporary packing list running install running build running build_py running install_lib copying pyteomics/pylab_aux.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics Skipping installation of /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/__init__.py (namespace package) copying pyteomics/mzxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/fasta.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/protxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/_schema_defaults.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/ms1.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/xml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/mzml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/electrochem.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/mgf.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/mzid.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/tandem.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/pepxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/achrom.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/parser.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/auxiliary/structures.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/patch.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/__init__.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/constants.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/utils.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/target_decoy.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/file_helpers.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/math.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/mass/mass.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass copying pyteomics/mass/unimod.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass copying pyteomics/mass/__init__.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass copying pyteomics/openms/featurexml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms copying pyteomics/openms/trafoxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms copying pyteomics/openms/__init__.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/pylab_aux.py to pylab_aux.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mzxml.py to mzxml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/fasta.py to fasta.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/protxml.py to protxml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/_schema_defaults.py to _schema_defaults.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/ms1.py to ms1.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/xml.py to xml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mzml.py to mzml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/electrochem.py to electrochem.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mgf.py to mgf.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mzid.py to mzid.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/tandem.py to tandem.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/pepxml.py to pepxml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/achrom.py to achrom.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/parser.py to parser.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/structures.py to structures.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/patch.py to patch.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/constants.py to constants.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/utils.py to utils.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/target_decoy.py to target_decoy.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/file_helpers.py to file_helpers.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/math.py to math.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass/mass.py to mass.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass/unimod.py to unimod.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms/featurexml.py to featurexml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms/trafoxml.py to trafoxml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms/__init__.py to __init__.cpython-36.pyc writing byte-compilation script '/tmp/tmpwyq0ctav.py' /usr/local/bin/python3.6 /tmp/tmpwyq0ctav.py removing /tmp/tmpwyq0ctav.py running install_egg_info running egg_info writing pyteomics.egg-info/PKG-INFO writing dependency_links to pyteomics.egg-info/dependency_links.txt writing namespace_packages to pyteomics.egg-info/namespace_packages.txt writing requirements to pyteomics.egg-info/requires.txt writing top-level names to pyteomics.egg-info/top_level.txt reading manifest file 'pyteomics.egg-info/SOURCES.txt' writing manifest file 'pyteomics.egg-info/SOURCES.txt' Copying pyteomics.egg-info to /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics-3.5.1-py3.6.egg-info Installing /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics-3.5.1-py3.6-nspkg.pth running install_scripts writing list of installed files to '/construction/science/py-pyteomics/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-pyteomics-3.5.1_1 file sizes/checksums [98]: . done packing files [98]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 8 MAR 2019 at 07:23:00 UTC Duration: 00:00:50