=> Building science/py-oddt@py36 Started : Friday, 8 MAR 2019 at 07:17:59 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/science/py-oddt XDG_CONFIG_HOME=/construction/science/py-oddt HOME=/construction/science/py-oddt TMPDIR="/tmp" PATH=/construction/science/py-oddt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-oddt XDG_CONFIG_HOME=/construction/science/py-oddt HOME=/construction/science/py-oddt TMPDIR="/tmp" PATH=/construction/science/py-oddt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-oddt/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py36-oddt" EXAMPLESDIR="share/examples/py36-oddt" DATADIR="share/py36-oddt" WWWDIR="www/py36-oddt" ETCDIR="etc/py36-oddt" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py36-oddt DOCSDIR=/usr/local/share/doc/py36-oddt EXAMPLESDIR=/usr/local/share/examples/py36-oddt WWWDIR=/usr/local/www/py36-oddt ETCDIR=/usr/local/etc/py36-oddt -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-oddt-0.6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> py36-oddt-0.6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-oddt-0.6 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-oddt-0.6 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-oddt-0.6 for building => SHA256 Checksum OK for oddt-oddt-0.6_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-oddt-0.6 for building ===> Extracting for py36-oddt-0.6 => SHA256 Checksum OK for oddt-oddt-0.6_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-oddt-0.6 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-oddt-0.6 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.1,1.txz Installing py36-numpy-1.16.1,1... `-- Installing gcc5-5.5.0_6... | `-- Installing binutils-2.32,1... | | `-- Installing gettext-runtime-0.19.8.1_2... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done | `-- Extracting binutils-2.32,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ......... done `-- Extracting gcc5-5.5.0_6: .......... done `-- Installing openblas-0.2.20_7,1... `-- Extracting openblas-0.2.20_7,1: ......... done `-- Installing py36-setuptools-40.8.0... | `-- Installing python36-3.6.8... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libressl-2.8.3... | | `-- Extracting libressl-2.8.3: .......... done | | `-- Installing ncurses-6.1.20190112... | | `-- Extracting ncurses-6.1.20190112: .......... done | | `-- Installing readline-7.0.5... | | `-- Extracting readline-7.0.5: .......... done | `-- Extracting python36-3.6.8: .......... done `-- Extracting py36-setuptools-40.8.0: .......... done `-- Installing suitesparse-5.2.0_2... | `-- Installing lapack-3.5.0_6... | | `-- Installing blas-3.5.0_5... | | `-- Extracting blas-3.5.0_5: ....... done | `-- Extracting lapack-3.5.0_6: .......... done | `-- Installing metis-5.1.0_7... | `-- Extracting metis-5.1.0_7: .......... done `-- Extracting suitesparse-5.2.0_2: .......... done Extracting py36-numpy-1.16.1,1: .......... done Message from gcc5-5.5.0_6: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 7 or newer instead.. Message from python36-3.6.8: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-40.8.0: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-oddt-0.6 depends on package: py36-numpy>0 - found ===> Returning to build of py36-oddt-0.6 ===> py36-oddt-0.6 depends on package: py36-joblib>0 - not found ===> Installing existing package /packages/All/py36-joblib-0.13.0.txz Installing py36-joblib-0.13.0... Extracting py36-joblib-0.13.0: .......... done ===> py36-oddt-0.6 depends on package: py36-joblib>0 - found ===> Returning to build of py36-oddt-0.6 ===> py36-oddt-0.6 depends on package: py36-pandas>0 - not found ===> Installing existing package /packages/All/py36-pandas-0.24.0.txz Installing py36-pandas-0.24.0... `-- Installing py36-bottleneck-1.2.1_4... `-- Extracting py36-bottleneck-1.2.1_4: .......... done `-- Installing py36-dateutil-2.7.3... | `-- Installing py36-six-1.12.0... | `-- Extracting py36-six-1.12.0: .......... done `-- Extracting py36-dateutil-2.7.3: .......... done `-- Installing py36-numexpr-2.6.9... `-- Extracting py36-numexpr-2.6.9: .......... done `-- Installing py36-pytz-2018.9,1... `-- Extracting py36-pytz-2018.9,1: .......... done `-- Installing py36-sqlite3-3.6.8_7... | `-- Installing sqlite3-3.27.1... | `-- Extracting sqlite3-3.27.1: .......... done `-- Extracting py36-sqlite3-3.6.8_7: ........ done Extracting py36-pandas-0.24.0: .......... done Message from py36-pandas-0.24.0: === Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. === ===> py36-oddt-0.6 depends on package: py36-pandas>0 - found ===> Returning to build of py36-oddt-0.6 ===> py36-oddt-0.6 depends on package: py36-scikit-learn>0 - not found ===> Installing existing package /packages/All/py36-scikit-learn-0.20.2.txz Installing py36-scikit-learn-0.20.2... `-- Installing cblas-1.0_10... `-- Extracting cblas-1.0_10: ......... done `-- Installing py36-scipy-1.2.0... `-- Extracting py36-scipy-1.2.0: .......... done Extracting py36-scikit-learn-0.20.2: .......... done Message from cblas-1.0_10: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-oddt-0.6 depends on package: py36-scikit-learn>0 - found ===> Returning to build of py36-oddt-0.6 ===> py36-oddt-0.6 depends on package: py36-scipy>=0.9.0 - found ===> py36-oddt-0.6 depends on package: py36-six>0 - found ===> py36-oddt-0.6 depends on package: py36-setuptools>0 - found ===> py36-oddt-0.6 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-oddt-0.6 running config /construction/science/py-oddt/oddt-0.6/oddt/__init__.py:50: UserWarning: No toolkit is present. Install OpenBabel or RDKit warnings.warn('No toolkit is present. Install OpenBabel or RDKit') -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-oddt-0.6 running build running build_py creating build creating build/lib creating build/lib/tests copying tests/test_toolkit.py -> build/lib/tests copying tests/test_surface.py -> build/lib/tests copying tests/__init__.py -> build/lib/tests copying tests/test_spatial.py -> build/lib/tests copying tests/test_utils.py -> build/lib/tests copying tests/test_shape.py -> build/lib/tests copying tests/test_models.py -> build/lib/tests copying tests/test_scoring.py -> build/lib/tests copying tests/test_pandas.py -> build/lib/tests copying tests/test_descriptors.py -> build/lib/tests copying tests/test_fingerprints.py -> build/lib/tests copying tests/test_datasets.py -> build/lib/tests copying tests/utils.py -> build/lib/tests copying tests/test_virtualscreening.py -> build/lib/tests copying tests/test_metrics.py -> build/lib/tests copying tests/test_interactions.py -> build/lib/tests creating build/lib/oddt copying oddt/interactions.py -> build/lib/oddt copying oddt/pandas.py -> build/lib/oddt copying oddt/metrics.py -> build/lib/oddt copying oddt/fingerprints.py -> build/lib/oddt copying oddt/virtualscreening.py -> build/lib/oddt copying oddt/datasets.py -> build/lib/oddt copying oddt/utils.py -> build/lib/oddt copying oddt/__init__.py -> build/lib/oddt copying oddt/spatial.py -> build/lib/oddt copying oddt/shape.py -> build/lib/oddt copying oddt/surface.py -> build/lib/oddt creating build/lib/oddt/docking copying oddt/docking/internal.py -> build/lib/oddt/docking copying oddt/docking/__init__.py -> build/lib/oddt/docking copying oddt/docking/AutodockVina.py -> build/lib/oddt/docking creating build/lib/oddt/scoring copying oddt/scoring/__init__.py -> build/lib/oddt/scoring creating build/lib/oddt/toolkits copying oddt/toolkits/rdk.py -> build/lib/oddt/toolkits copying oddt/toolkits/ob.py -> build/lib/oddt/toolkits copying oddt/toolkits/__init__.py -> build/lib/oddt/toolkits copying oddt/toolkits/common.py -> build/lib/oddt/toolkits creating build/lib/oddt/scoring/models copying oddt/scoring/models/__init__.py -> build/lib/oddt/scoring/models copying oddt/scoring/models/classifiers.py -> build/lib/oddt/scoring/models copying oddt/scoring/models/regressors.py -> build/lib/oddt/scoring/models creating build/lib/oddt/scoring/functions copying oddt/scoring/functions/__init__.py -> build/lib/oddt/scoring/functions copying oddt/scoring/functions/RFScore.py -> build/lib/oddt/scoring/functions copying oddt/scoring/functions/NNScore.py -> build/lib/oddt/scoring/functions copying oddt/scoring/functions/PLECscore.py -> build/lib/oddt/scoring/functions creating build/lib/oddt/scoring/descriptors copying oddt/scoring/descriptors/binana.py -> build/lib/oddt/scoring/descriptors copying oddt/scoring/descriptors/__init__.py -> build/lib/oddt/scoring/descriptors creating build/lib/oddt/toolkits/extras copying oddt/toolkits/extras/rdkit.py -> build/lib/oddt/toolkits/extras copying oddt/toolkits/extras/__init__.py -> build/lib/oddt/toolkits/extras creating build/lib/oddt/scoring/functions/NNScore copying oddt/scoring/functions/NNScore/nnscore_descs.csv -> build/lib/oddt/scoring/functions/NNScore creating build/lib/oddt/scoring/functions/RFScore copying oddt/scoring/functions/RFScore/rfscore_descs_v3.csv -> build/lib/oddt/scoring/functions/RFScore copying oddt/scoring/functions/RFScore/rfscore_descs_v2.csv -> build/lib/oddt/scoring/functions/RFScore copying oddt/scoring/functions/RFScore/rfscore_descs_v1.csv -> build/lib/oddt/scoring/functions/RFScore creating build/lib/oddt/scoring/functions/PLECscore copying oddt/scoring/functions/PLECscore/plecscore_linear_p5_l1_s65536_pdbbind2016.json -> build/lib/oddt/scoring/functions/PLECscore running build_scripts creating build/scripts-3.6 copying and adjusting bin/oddt_cli -> build/scripts-3.6 changing mode of build/scripts-3.6/oddt_cli from 644 to 755 /construction/science/py-oddt/oddt-0.6/oddt/__init__.py:50: UserWarning: No toolkit is present. Install OpenBabel or RDKit warnings.warn('No toolkit is present. Install OpenBabel or RDKit') -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-oddt-0.6 depends on package: py36-numpy>0 - found ===> py36-oddt-0.6 depends on package: py36-joblib>0 - found ===> py36-oddt-0.6 depends on package: py36-pandas>0 - found ===> py36-oddt-0.6 depends on package: py36-scikit-learn>0 - found ===> py36-oddt-0.6 depends on package: py36-scipy>=0.9.0 - found ===> py36-oddt-0.6 depends on package: py36-six>0 - found ===> py36-oddt-0.6 depends on package: py36-setuptools>0 - found ===> py36-oddt-0.6 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-oddt-0.6 ===> Generating temporary packing list running install running build running build_py running build_scripts running install_lib creating /construction/science/py-oddt/stage/usr/local/lib/python3.6 creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_surface.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_toolkit.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_spatial.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_virtualscreening.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/utils.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_shape.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_utils.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_models.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_metrics.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_scoring.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_pandas.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_interactions.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_descriptors.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_fingerprints.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_datasets.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking copying build/lib/oddt/docking/internal.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking copying build/lib/oddt/docking/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking copying build/lib/oddt/docking/AutodockVina.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras copying build/lib/oddt/toolkits/extras/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras copying build/lib/oddt/toolkits/extras/rdkit.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras copying build/lib/oddt/toolkits/common.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/rdk.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/ob.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits copying build/lib/oddt/interactions.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/pandas.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/metrics.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/virtualscreening.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/fingerprints.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/surface.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/utils.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/datasets.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors copying build/lib/oddt/scoring/descriptors/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors copying build/lib/oddt/scoring/descriptors/binana.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors copying build/lib/oddt/scoring/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/RFScore/rfscore_descs_v2.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/RFScore/rfscore_descs_v3.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/RFScore/rfscore_descs_v1.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/PLECscore.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions copying build/lib/oddt/scoring/functions/NNScore.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/NNScore copying build/lib/oddt/scoring/functions/NNScore/nnscore_descs.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/NNScore creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/PLECscore copying build/lib/oddt/scoring/functions/PLECscore/plecscore_linear_p5_l1_s65536_pdbbind2016.json -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/PLECscore copying build/lib/oddt/scoring/functions/RFScore.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions copying build/lib/oddt/scoring/functions/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/models/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/models/classifiers.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/models/regressors.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models copying build/lib/oddt/spatial.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/shape.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_surface.py to test_surface.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_toolkit.py to test_toolkit.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_spatial.py to test_spatial.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_virtualscreening.py to test_virtualscreening.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/utils.py to utils.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_shape.py to test_shape.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_utils.py to test_utils.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_models.py to test_models.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_metrics.py to test_metrics.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_scoring.py to test_scoring.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_pandas.py to test_pandas.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_interactions.py to test_interactions.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_descriptors.py to test_descriptors.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_fingerprints.py to test_fingerprints.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_datasets.py to test_datasets.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking/internal.py to internal.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking/AutodockVina.py to AutodockVina.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras/rdkit.py to rdkit.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/common.py to common.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/rdk.py to rdk.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/ob.py to ob.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/interactions.py to interactions.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/pandas.py to pandas.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/metrics.py to metrics.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/virtualscreening.py to virtualscreening.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/fingerprints.py to fingerprints.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/surface.py to surface.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/utils.py to utils.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/datasets.py to datasets.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors/binana.py to binana.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/PLECscore.py to PLECscore.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/NNScore.py to NNScore.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore.py to RFScore.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models/classifiers.py to classifiers.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models/regressors.py to regressors.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/spatial.py to spatial.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/shape.py to shape.cpython-36.pyc writing byte-compilation script '/tmp/tmpermo8jv6.py' /usr/local/bin/python3.6 /tmp/tmpermo8jv6.py removing /tmp/tmpermo8jv6.py running install_egg_info running egg_info creating oddt.egg-info writing oddt.egg-info/PKG-INFO writing dependency_links to oddt.egg-info/dependency_links.txt writing requirements to oddt.egg-info/requires.txt writing top-level names to oddt.egg-info/top_level.txt writing manifest file 'oddt.egg-info/SOURCES.txt' reading manifest file 'oddt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'oddt.egg-info/SOURCES.txt' Copying oddt.egg-info to /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt-0.5-py3.6.egg-info running install_scripts copying build/scripts-3.6/oddt_cli -> /construction/science/py-oddt/stage/usr/local/bin changing mode of /construction/science/py-oddt/stage/usr/local/bin/oddt_cli to 755 writing list of installed files to '/construction/science/py-oddt/.PLIST.pymodtmp' /construction/science/py-oddt/oddt-0.6/oddt/__init__.py:50: UserWarning: No toolkit is present. Install OpenBabel or RDKit warnings.warn('No toolkit is present. Install OpenBabel or RDKit') ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/oddt_cli --> bin/oddt_cli-3.6 ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-oddt-0.6 file sizes/checksums [152]: .. done packing files [152]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 8 MAR 2019 at 07:19:17 UTC Duration: 00:01:18