=> Building science/py-h5py@py36 Started : Wednesday, 6 MAR 2019 at 18:40:40 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for py36-h5py-2.9.0_1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/science/py-h5py XDG_CONFIG_HOME=/construction/science/py-h5py HOME=/construction/science/py-h5py TMPDIR="/tmp" PATH=/construction/science/py-h5py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-h5py XDG_CONFIG_HOME=/construction/science/py-h5py HOME=/construction/science/py-h5py TMPDIR="/tmp" PATH=/construction/science/py-h5py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-h5py/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py36-h5py" EXAMPLESDIR="share/examples/py36-h5py" DATADIR="share/py36-h5py" WWWDIR="www/py36-h5py" ETCDIR="etc/py36-h5py" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py36-h5py DOCSDIR=/usr/local/share/doc/py36-h5py EXAMPLESDIR=/usr/local/share/examples/py36-h5py WWWDIR=/usr/local/www/py36-h5py ETCDIR=/usr/local/etc/py36-h5py -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.2 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-h5py-2.9.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> py36-h5py-2.9.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-h5py-2.9.0_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-h5py-2.9.0_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-h5py-2.9.0_1 for building => SHA256 Checksum OK for h5py-2.9.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-h5py-2.9.0_1 for building ===> Extracting for py36-h5py-2.9.0_1 => SHA256 Checksum OK for h5py-2.9.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-h5py-2.9.0_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-h5py-2.9.0_1 depends on package: py36-pkgconfig>=0 - not found ===> Installing existing package /packages/All/py36-pkgconfig-1.4.0.txz Installing py36-pkgconfig-1.4.0... `-- Installing py36-setuptools-40.8.0... | `-- Installing python36-3.6.8... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing gettext-runtime-0.19.8.1_2... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libressl-2.8.3... | | `-- Extracting libressl-2.8.3: .......... done | | `-- Installing ncurses-6.1.20190112... | | `-- Extracting ncurses-6.1.20190112: .......... done | | `-- Installing readline-7.0.5... | | `-- Extracting readline-7.0.5: .......... done | `-- Extracting python36-3.6.8: .......... done `-- Extracting py36-setuptools-40.8.0: .......... done Extracting py36-pkgconfig-1.4.0: .......... done Message from python36-3.6.8: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-40.8.0: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* ===> py36-h5py-2.9.0_1 depends on package: py36-pkgconfig>=0 - found ===> Returning to build of py36-h5py-2.9.0_1 ===> py36-h5py-2.9.0_1 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.1,1.txz Installing py36-numpy-1.16.1,1... `-- Installing gcc5-5.5.0_6... | `-- Installing binutils-2.32,1... | `-- Extracting binutils-2.32,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ......... done `-- Extracting gcc5-5.5.0_6: .......... done `-- Installing openblas-0.2.20_7,1... `-- Extracting openblas-0.2.20_7,1: ......... done `-- Installing suitesparse-5.2.0_2... | `-- Installing lapack-3.5.0_6... | | `-- Installing blas-3.5.0_5... | | `-- Extracting blas-3.5.0_5: ....... done | `-- Extracting lapack-3.5.0_6: .......... done | `-- Installing metis-5.1.0_7... | `-- Extracting metis-5.1.0_7: .......... done `-- Extracting suitesparse-5.2.0_2: .......... done Extracting py36-numpy-1.16.1,1: .......... done Message from gcc5-5.5.0_6: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 7 or newer instead.. Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-h5py-2.9.0_1 depends on package: py36-numpy>0 - found ===> Returning to build of py36-h5py-2.9.0_1 ===> py36-h5py-2.9.0_1 depends on package: py36-six>=0 - not found ===> Installing existing package /packages/All/py36-six-1.12.0.txz Installing py36-six-1.12.0... Extracting py36-six-1.12.0: .......... done ===> py36-h5py-2.9.0_1 depends on package: py36-six>=0 - found ===> Returning to build of py36-h5py-2.9.0_1 ===> py36-h5py-2.9.0_1 depends on package: py36-setuptools>0 - found ===> py36-h5py-2.9.0_1 depends on file: /usr/local/bin/python3.6 - found ===> py36-h5py-2.9.0_1 depends on executable: cython-3.6 - not found ===> Installing existing package /packages/All/py36-cython-0.29.txz Installing py36-cython-0.29... Extracting py36-cython-0.29: .......... done ===> py36-h5py-2.9.0_1 depends on executable: cython-3.6 - found ===> Returning to build of py36-h5py-2.9.0_1 ===> py36-h5py-2.9.0_1 depends on package: py36-setuptools>0 - found ===> py36-h5py-2.9.0_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py36-h5py-2.9.0_1 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.1_2.txz Installing hdf5-1.10.1_2... `-- Installing hdf-szip-2.1.1... `-- Extracting hdf-szip-2.1.1: .......... done Extracting hdf5-1.10.1_2: .......... done ===> py36-h5py-2.9.0_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of py36-h5py-2.9.0_1 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-h5py-2.9.0_1 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-h5py-2.9.0_1 running build running build_py creating build creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6 creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py copying h5py/ipy_completer.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py copying h5py/highlevel.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py copying h5py/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py copying h5py/h5py_warnings.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py copying h5py/version.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/vds.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/selections.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/group.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/filters.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/files.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/dims.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/compat.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl copying h5py/_hl/base.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests copying h5py/tests/common.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests copying h5py/tests/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_h5f.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_h5.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_h5p.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_attrs.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_group.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_objects.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_selections.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_h5t.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_slicing.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_attrs_data.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_datatype.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_file_image.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_file.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_dataset.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_base.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_dimension_scales.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old copying h5py/tests/old/test_h5d_direct_chunk_write.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/test_dims_dimensionproxy.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/test_deprecation.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/test_datatype.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/test_dataset_swmr.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/test_dataset_getitem.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/test_attribute_create.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/test_filters.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/test_file.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl copying h5py/tests/hl/test_threads.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_vds copying h5py/tests/hl/test_vds/test_highlevel_vds.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_vds copying h5py/tests/hl/test_vds/test_virtual_source.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_vds copying h5py/tests/hl/test_vds/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_vds copying h5py/tests/hl/test_vds/test_lowlevel_vds.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_vds running build_ext /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/_conv.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/_errors.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/_objects.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/_proxy.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/defs.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5a.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5ac.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5d.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5ds.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5f.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5fd.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared warning: h5py/h5fd.pxd:18:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/h5fd.pxd:19:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/h5fd.pxd:20:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/h5fd.pxd:21:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/h5fd.pxd:22:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/h5fd.pxd:23:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/h5fd.pxd:24:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/h5fd.pxd:25:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/h5fd.pxd:26:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/h5fd.pxd:31:8: 'H5FD_CORE' redeclared warning: h5py/h5fd.pxd:32:8: 'H5FD_FAMILY' redeclared warning: h5py/h5fd.pxd:34:8: 'H5FD_LOG' redeclared warning: h5py/h5fd.pxd:35:8: 'H5FD_MPIO' redeclared warning: h5py/h5fd.pxd:37:8: 'H5FD_MULTI' redeclared warning: h5py/h5fd.pxd:38:8: 'H5FD_SEC2' redeclared warning: h5py/h5fd.pxd:39:8: 'H5FD_STDIO' redeclared warning: h5py/h5fd.pxd:44:6: 'H5FD_LOG_LOC_READ' redeclared warning: h5py/h5fd.pxd:45:6: 'H5FD_LOG_LOC_WRITE' redeclared warning: h5py/h5fd.pxd:46:6: 'H5FD_LOG_LOC_SEEK' redeclared warning: h5py/h5fd.pxd:47:6: 'H5FD_LOG_LOC_IO' redeclared warning: h5py/h5fd.pxd:50:6: 'H5FD_LOG_FILE_READ' redeclared warning: h5py/h5fd.pxd:51:6: 'H5FD_LOG_FILE_WRITE' redeclared warning: h5py/h5fd.pxd:52:6: 'H5FD_LOG_FILE_IO' redeclared warning: h5py/h5fd.pxd:55:6: 'H5FD_LOG_FLAVOR' redeclared warning: h5py/h5fd.pxd:58:6: 'H5FD_LOG_NUM_READ' redeclared warning: h5py/h5fd.pxd:59:6: 'H5FD_LOG_NUM_WRITE' redeclared warning: h5py/h5fd.pxd:60:6: 'H5FD_LOG_NUM_SEEK' redeclared warning: h5py/h5fd.pxd:61:6: 'H5FD_LOG_NUM_IO' redeclared warning: h5py/h5fd.pxd:64:6: 'H5FD_LOG_TIME_OPEN' redeclared warning: h5py/h5fd.pxd:65:6: 'H5FD_LOG_TIME_READ' redeclared warning: h5py/h5fd.pxd:66:6: 'H5FD_LOG_TIME_WRITE' redeclared warning: h5py/h5fd.pxd:67:6: 'H5FD_LOG_TIME_SEEK' redeclared warning: h5py/h5fd.pxd:68:6: 'H5FD_LOG_TIME_CLOSE' redeclared warning: h5py/h5fd.pxd:69:6: 'H5FD_LOG_TIME_IO' redeclared warning: h5py/h5fd.pxd:72:6: 'H5FD_LOG_ALLOC' redeclared warning: h5py/h5fd.pxd:73:6: 'H5FD_LOG_ALL' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5g.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5i.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5l.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5o.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5r.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5s.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared Autodetected HDF5 1.10.1 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.1' MPI Enabled: False Rebuild Required: True ******************************************************************************** Executing api_gen rebuild of defs Executing cythonize() ./h5py/api_types_ext.pxd: cannot find cimported module 'mpi4py.MPI' /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.pyx: cannot find cimported module 'mpi4py.mpi_c' /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.pyx: cannot find cimported module 'mpi4py.libmpi' [ 1/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/_conv.pyx [ 2/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/_errors.pyx [ 3/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/_objects.pyx [ 4/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/_proxy.pyx [ 5/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/defs.pyx [ 6/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5.pyx [ 7/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5a.pyx [ 8/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5ac.pyx [ 9/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5d.pyx [10/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5ds.pyx [11/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5f.pyx [12/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5fd.pyx [13/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5g.pyx [14/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5i.pyx [15/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5l.pyx [16/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5o.pyx [17/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.pyx [18/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5r.pyx [19/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5s.pyx [20/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5t.pyx [21/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/h5z.pyx [22/22] Cythonizing /construction/science/py-h5py/h5py-2.9.0/h5py/utils.pyx building 'h5py.defs' extension creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0 creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/defs.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/defs.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/defs.c:657: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/defs.c: In function '__pyx_f_4h5py_4defs_H5Pget_driver_info': /construction/science/py-h5py/h5py-2.9.0/h5py/defs.c:20751:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_1 = H5Pget_driver_info(__pyx_v_plist_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1969, __pyx_L1_error) ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/defs.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/defs.so building 'h5py._errors' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/_errors.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/_errors.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/_errors.c:657: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_walk_cb': /construction/science/py-h5py/h5py-2.9.0/h5py/_errors.c:1311:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_3 = (__pyx_v_desc[0]).desc; ^ /construction/science/py-h5py/h5py-2.9.0/h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_set_exception': /construction/science/py-h5py/h5py-2.9.0/h5py/_errors.c:1600:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ /construction/science/py-h5py/h5py-2.9.0/h5py/_errors.c:1683:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/_errors.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_errors.so building 'h5py._objects' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/_objects.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/_objects.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/_objects.c:657: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/_objects.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_objects.so building 'h5py._proxy' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/_proxy.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/_proxy.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/_proxy.c:657: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/_proxy.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_proxy.so building 'h5py.h5fd' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5fd.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5fd.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5fd.c:657: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5fd.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5fd.so building 'h5py.h5z' extension creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/lzf creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/lzf/lzf cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5z.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5z.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5z.c:660: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/lzf/lzf_filter.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/lzf/lzf_filter.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/lzf/lzf/lzf_c.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/lzf/lzf/lzf_c.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/lzf/lzf/lzf_d.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/lzf/lzf/lzf_d.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5z.o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/lzf/lzf_filter.o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/lzf/lzf/lzf_c.o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/lzf/lzf/lzf_d.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5z.so building 'h5py.h5' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5.c:657: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5.so building 'h5py.h5i' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5i.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5i.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5i.c:657: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5i.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5i.so building 'h5py.h5r' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5r.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5r.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5r.c:657: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5r.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5r.so building 'h5py.utils' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/utils.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/utils.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/utils.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/utils.c: In function '__pyx_pymod_exec_utils': /construction/science/py-h5py/h5py-2.9.0/h5py/utils.c:3453:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/utils.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/utils.so building 'h5py._conv' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/_conv.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/_conv.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/_conv.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/_conv.c: In function '__pyx_pymod_exec__conv': /construction/science/py-h5py/h5py-2.9.0/h5py/_conv.c:8108:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/_conv.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_conv.so building 'h5py.h5t' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5t.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5t.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5t.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5t.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5t.so building 'h5py.h5s' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5s.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5s.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5s.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5s.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5s.so building 'h5py.h5p' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5p.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.c: In function '__pyx_pymod_exec_h5p': /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.c:24618:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5p.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5p.so building 'h5py.h5d' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5d.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5d.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5d.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/h5d.c: In function '__pyx_pymod_exec_h5d': /construction/science/py-h5py/h5py-2.9.0/h5py/h5d.c:7418:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5d.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5d.so building 'h5py.h5a' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5a.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5a.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5a.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/h5a.c: In function '__pyx_pymod_exec_h5a': /construction/science/py-h5py/h5py-2.9.0/h5py/h5a.c:9272:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5a.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5a.so building 'h5py.h5f' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5f.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5f.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5f.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5f.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5f.so building 'h5py.h5g' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5g.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5g.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5g.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5g.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5g.so building 'h5py.h5l' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5l.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5l.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5l.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/h5l.c: In function '__pyx_pf_4h5py_3h5l_9LinkProxy_12get_val': /construction/science/py-h5py/h5py-2.9.0/h5py/h5l.c:3961:95: warning: passing argument 4 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/h5l.c:3961:95: note: expected 'const char **' but argument is of type 'char **' /construction/science/py-h5py/h5py-2.9.0/h5py/h5l.c:3961:121: warning: passing argument 5 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-h5py/h5py-2.9.0/h5py/h5l.c:3961:121: note: expected 'const char **' but argument is of type 'char **' cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5l.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5l.so building 'h5py.h5o' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5o.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5o.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5o.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5o.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5o.so building 'h5py.h5ds' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5ds.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5ds.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5ds.c:658: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5ds.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5ds.so building 'h5py.h5ac' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.9.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c /construction/science/py-h5py/h5py-2.9.0/h5py/h5ac.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5ac.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.9.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.9.0/h5py/h5ac.c:657: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/construction/science/py-h5py/h5py-2.9.0/h5py/h5ac.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5ac.so warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5t.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/h5z.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-h5py/h5py-2.9.0/h5py/utils.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: h5py/api_types_hdf5.pxd:408:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:415:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:422:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:428:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:434:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:446:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:452:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:550:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:729:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:409:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:410:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:411:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:412:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:413:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:416:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:417:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:418:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:424:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:425:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:431:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:432:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:437:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:438:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:449:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:450:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:453:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:454:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:455:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:456:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:461:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:551:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:552:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:695:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:730:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:731:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:732:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:733:6: 'H5Z_NO_EDC' redeclared -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-h5py-2.9.0_1 depends on package: py36-numpy>0 - found ===> py36-h5py-2.9.0_1 depends on package: py36-six>=0 - found ===> py36-h5py-2.9.0_1 depends on package: py36-setuptools>0 - found ===> py36-h5py-2.9.0_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-h5py-2.9.0_1 ===> Generating temporary packing list running install running build running build_py running build_ext Autodetected HDF5 1.10.1 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.1' MPI Enabled: False Rebuild Required: False ******************************************************************************** Executing cythonize() ./h5py/api_types_ext.pxd: cannot find cimported module 'mpi4py.MPI' /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.pyx: cannot find cimported module 'mpi4py.mpi_c' /construction/science/py-h5py/h5py-2.9.0/h5py/h5p.pyx: cannot find cimported module 'mpi4py.libmpi' running install_lib creating /construction/science/py-h5py/stage/usr/local/lib/python3.6 creating /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_errors.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_proxy.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/defs.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5l.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5ds.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5r.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5i.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5g.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5d.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py creating /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/common.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests creating /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_dataset.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_slicing.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_h5f.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_base.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_file_image.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_attrs_data.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_attrs.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_file.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_dimension_scales.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_group.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_objects.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_h5d_direct_chunk_write.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_h5.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_h5p.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_h5t.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/old/test_selections.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests creating /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_file.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_threads.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl creating /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_vds copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_vds/test_highlevel_vds.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_vds copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_vds/test_virtual_source.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_vds copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_vds/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_vds copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_vds/test_lowlevel_vds.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_vds copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_dims_dimensionproxy.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_dataset_getitem.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_deprecation.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_dataset_swmr.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_attribute_create.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/tests/hl/test_filters.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5py_warnings.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py creating /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/base.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/selections.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/group.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/filters.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/files.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/dims.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/vds.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/dataset.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/attrs.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/selections2.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_hl/compat.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/version.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/ipy_completer.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/highlevel.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5f.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5ac.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5p.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/utils.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_conv.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5z.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/_objects.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5a.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5o.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5s.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5t.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/h5py/h5fd.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/common.py to common.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_dataset.py to test_dataset.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_slicing.py to test_slicing.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_h5f.py to test_h5f.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_base.py to test_base.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_file_image.py to test_file_image.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_attrs_data.py to test_attrs_data.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_attrs.py to test_attrs.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_file.py to test_file.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_dimension_scales.py to test_dimension_scales.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_group.py to test_group.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_objects.py to test_objects.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_datatype.py to test_datatype.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_h5d_direct_chunk_write.py to test_h5d_direct_chunk_write.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_h5.py to test_h5.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_h5p.py to test_h5p.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_h5t.py to test_h5t.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/old/test_selections.py to test_selections.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_file.py to test_file.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_threads.py to test_threads.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_vds/test_highlevel_vds.py to test_highlevel_vds.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_vds/test_virtual_source.py to test_virtual_source.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_vds/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_vds/test_lowlevel_vds.py to test_lowlevel_vds.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_dims_dimensionproxy.py to test_dims_dimensionproxy.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_dataset_getitem.py to test_dataset_getitem.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_deprecation.py to test_deprecation.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_datatype.py to test_datatype.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_dataset_swmr.py to test_dataset_swmr.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_attribute_create.py to test_attribute_create.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/tests/hl/test_filters.py to test_filters.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/h5py_warnings.py to h5py_warnings.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/base.py to base.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/selections.py to selections.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/group.py to group.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/filters.py to filters.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/files.py to files.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/dims.py to dims.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/datatype.py to datatype.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/vds.py to vds.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/dataset.py to dataset.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/attrs.py to attrs.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/selections2.py to selections2.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/_hl/compat.py to compat.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/version.py to version.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/ipy_completer.py to ipy_completer.cpython-36.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/highlevel.py to highlevel.cpython-36.pyc writing byte-compilation script '/tmp/tmp3nwan271.py' /usr/local/bin/python3.6 /tmp/tmp3nwan271.py removing /tmp/tmp3nwan271.py running install_egg_info running egg_info writing h5py.egg-info/PKG-INFO writing dependency_links to h5py.egg-info/dependency_links.txt writing requirements to h5py.egg-info/requires.txt writing top-level names to h5py.egg-info/top_level.txt reading manifest file 'h5py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'docs/_build' no previously-included directories found matching 'docs_api/_build' warning: no previously-included files matching '.DS_Store' found under directory '*' warning: no previously-included files found matching 'ci' warning: no previously-included files found matching 'other' warning: no previously-included files found matching '.github' warning: no previously-included files matching '*' found under directory 'ci' warning: no previously-included files matching '*' found under directory 'other' warning: no previously-included files matching '*' found under directory '.github' warning: no previously-included files found matching 'pavement.py' warning: no previously-included files found matching '*.yml' warning: no previously-included files found matching '*.yaml' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'h5py.egg-info/SOURCES.txt' Copying h5py.egg-info to /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py-2.9.0-py3.6.egg-info running install_scripts writing list of installed files to '/construction/science/py-h5py/.PLIST.pymodtmp' /usr/bin/strip /construction/science/py-h5py/stage/usr/local/lib/python3.6/site-packages/h5py/*.so install -m 0644 /construction/science/py-h5py/h5py-2.9.0/README.rst /construction/science/py-h5py/stage/usr/local/share/doc/py36-h5py cd /construction/science/py-h5py/h5py-2.9.0/docs/ && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/science/py-h5py/stage/usr/local/share/doc/py36-h5py install -m 0644 /construction/science/py-h5py/h5py-2.9.0/examples/*.py /construction/science/py-h5py/stage/usr/local/share/examples/py36-h5py ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-h5py-2.9.0_1 file sizes/checksums [231]: ... done packing files [231]: ... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 6 MAR 2019 at 18:43:17 UTC Duration: 00:02:36