=> Building science/py-DendroPy@py27 Started : Thursday, 7 MAR 2019 at 13:00:36 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/py-DendroPy XDG_CONFIG_HOME=/construction/science/py-DendroPy HOME=/construction/science/py-DendroPy TMPDIR="/tmp" PATH=/construction/science/py-DendroPy/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-DendroPy XDG_CONFIG_HOME=/construction/science/py-DendroPy HOME=/construction/science/py-DendroPy TMPDIR="/tmp" PATH=/construction/science/py-DendroPy/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-DendroPy/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/DendroPy" EXAMPLESDIR="share/examples/DendroPy" DATADIR="share/DendroPy" WWWDIR="www/DendroPy" ETCDIR="etc/DendroPy" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/DendroPy DOCSDIR=/usr/local/share/doc/DendroPy EXAMPLESDIR=/usr/local/share/examples/DendroPy WWWDIR=/usr/local/www/DendroPy ETCDIR=/usr/local/etc/DendroPy -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.2 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-DendroPy-4.4.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> py27-DendroPy-4.4.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-DendroPy-4.4.0 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-DendroPy-4.4.0 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-DendroPy-4.4.0 for building => SHA256 Checksum OK for DendroPy-4.4.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-DendroPy-4.4.0 for building ===> Extracting for py27-DendroPy-4.4.0 => SHA256 Checksum OK for DendroPy-4.4.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-DendroPy-4.4.0 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-DendroPy-4.4.0 depends on package: py27-setuptools>0 - not found ===> Installing existing package /packages/All/py27-setuptools-40.8.0.txz Installing py27-setuptools-40.8.0... `-- Installing python27-2.7.15... | `-- Installing expat-2.2.6_1... | `-- Extracting expat-2.2.6_1: .......... done | `-- Installing gettext-runtime-0.19.8.1_2... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done | `-- Installing libffi-3.2.1_3... | `-- Extracting libffi-3.2.1_3: .......... done | `-- Installing libressl-2.8.3... | `-- Extracting libressl-2.8.3: .......... done | `-- Installing ncurses-6.1.20190112... | `-- Extracting ncurses-6.1.20190112: .......... done | `-- Installing readline-7.0.5... | `-- Extracting readline-7.0.5: .......... done `-- Extracting python27-2.7.15: .......... done Extracting py27-setuptools-40.8.0: .......... done Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> py27-DendroPy-4.4.0 depends on package: py27-setuptools>0 - found ===> Returning to build of py27-DendroPy-4.4.0 ===> py27-DendroPy-4.4.0 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-DendroPy-4.4.0 -setup.py: DendroPy version 4.4.0 -setup.py: using setuptools ('/usr/local/lib/python2.7/site-packages/setuptools/__init__.pyc') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.datamodel - dendropy.interop - dendropy.legacy - dendropy.dataio - dendropy.mathlib - dendropy.model - dendropy.calculate - dendropy.simulate - dendropy.utility - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py -setup.py: setuptools command extensions are available running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-DendroPy-4.4.0 -setup.py: DendroPy version 4.4.0 -setup.py: using setuptools ('/usr/local/lib/python2.7/site-packages/setuptools/__init__.pyc') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.datamodel - dendropy.interop - dendropy.legacy - dendropy.dataio - dendropy.mathlib - dendropy.model - dendropy.calculate - dendropy.simulate - dendropy.utility - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py -setup.py: setuptools command extensions are available running build running build_py creating build creating build/lib creating build/lib/dendropy copying src/dendropy/__main__.py -> build/lib/dendropy copying src/dendropy/__init__.py -> build/lib/dendropy creating build/lib/dendropy/datamodel copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/treemodel.py -> build/lib/dendropy/datamodel creating build/lib/dendropy/interop copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop creating build/lib/dendropy/legacy copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy creating build/lib/dendropy/dataio copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio creating build/lib/dendropy/mathlib copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib creating build/lib/dendropy/model copying src/dendropy/model/__init__.py -> build/lib/dendropy/model copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model copying src/dendropy/model/continuous.py -> build/lib/dendropy/model copying src/dendropy/model/discrete.py -> build/lib/dendropy/model copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model creating build/lib/dendropy/calculate copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate creating build/lib/dendropy/simulate copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate creating build/lib/dendropy/utility copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility copying src/dendropy/utility/container.py -> build/lib/dendropy/utility copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility copying src/dendropy/utility/error.py -> build/lib/dendropy/utility copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility creating build/lib/dendropy/utility/libexec copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec running egg_info writing requirements to src/DendroPy.egg-info/requires.txt writing src/DendroPy.egg-info/PKG-INFO writing top-level names to src/DendroPy.egg-info/top_level.txt writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing entry points to src/DendroPy.egg-info/entry_points.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts creating build/scripts-2.7 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-2.7 copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-2.7 changing mode of build/scripts-2.7/sumtrees.py from 644 to 755 changing mode of build/scripts-2.7/sumlabels.py from 644 to 755 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-DendroPy-4.4.0 depends on package: py27-setuptools>0 - found ===> py27-DendroPy-4.4.0 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-DendroPy-4.4.0 ===> Generating temporary packing list -setup.py: DendroPy version 4.4.0 -setup.py: using setuptools ('/usr/local/lib/python2.7/site-packages/setuptools/__init__.pyc') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.datamodel - dendropy.interop - dendropy.legacy - dendropy.dataio - dendropy.mathlib - dendropy.model - dendropy.calculate - dendropy.simulate - dendropy.utility - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py -setup.py: setuptools command extensions are available running install running build running build_py running egg_info writing requirements to src/DendroPy.egg-info/requires.txt writing src/DendroPy.egg-info/PKG-INFO writing top-level names to src/DendroPy.egg-info/top_level.txt writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing entry points to src/DendroPy.egg-info/entry_points.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts running install_lib creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7 creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/libexec copying build/lib/dendropy/utility/libexec/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/libexec copying build/lib/dendropy/utility/textprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/cli.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/urlio.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/vcsinfo.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/metavar.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/messaging.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/processio.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/bitprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/debug.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/bibtex.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/filesys.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/error.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/container.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/terminal.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/deprecate.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/timeprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility copying build/lib/dendropy/utility/constants.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/reconcile.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/coalescent.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/protractedspeciation.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/parsimony.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/multispeciescoalescent.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/continuous.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/treeshape.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/discrete.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model copying build/lib/dendropy/model/birthdeath.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treemeasure.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/profiledistance.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treecompare.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/phylogeneticdistance.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/popgenstat.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/probability.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/mathfn.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/combinatorics.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/statistics.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treesum.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treescore.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/popgensim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/treesim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/charsim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/statistics.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/probability.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/mathfn.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/genbank.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/muscle.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/paup.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/rstats.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/seqgen.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/raxml.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/rspr.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/gbif.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/ete.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/biopython.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/ape.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop copying build/lib/dendropy/interop/entrez.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/treecollectionmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/datasetmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/taxonmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/treemodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/charmatrixmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/basemodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/charstatemodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/reconcile.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/seqmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/popgensim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treecalc.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/seqsim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/popgenstat.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/ncbi.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/coalescent.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/continuous.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treesim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treemanip.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treesum.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treesplit.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy creating /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/tokenizer.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/ioservice.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/fastawriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/phylipreader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/phylipwriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexuswriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newick.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newickyielder.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newickreader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexusyielder.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newickwriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/xmlprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/fastareader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexusprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexmlyielder.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexmlwriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexusreader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexmlreader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio copying build/lib/dendropy/__main__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy copying build/lib/dendropy/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/libexec/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/textprocessing.py to textprocessing.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/cli.py to cli.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/urlio.py to urlio.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/vcsinfo.py to vcsinfo.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/metavar.py to metavar.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/messaging.py to messaging.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/processio.py to processio.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/bitprocessing.py to bitprocessing.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/debug.py to debug.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/bibtex.py to bibtex.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/filesys.py to filesys.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/error.py to error.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/container.py to container.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/terminal.py to terminal.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/deprecate.py to deprecate.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/timeprocessing.py to timeprocessing.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/utility/constants.py to constants.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/reconcile.py to reconcile.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/coalescent.py to coalescent.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/protractedspeciation.py to protractedspeciation.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/parsimony.py to parsimony.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/multispeciescoalescent.py to multispeciescoalescent.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/continuous.py to continuous.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/treeshape.py to treeshape.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/discrete.py to discrete.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/model/birthdeath.py to birthdeath.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/treemeasure.py to treemeasure.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/profiledistance.py to profiledistance.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/treecompare.py to treecompare.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/phylogeneticdistance.py to phylogeneticdistance.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/popgenstat.py to popgenstat.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/probability.py to probability.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/mathfn.py to mathfn.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/combinatorics.py to combinatorics.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/statistics.py to statistics.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/treesum.py to treesum.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/calculate/treescore.py to treescore.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate/popgensim.py to popgensim.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate/treesim.py to treesim.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/simulate/charsim.py to charsim.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib/statistics.py to statistics.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib/probability.py to probability.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/mathlib/mathfn.py to mathfn.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/genbank.py to genbank.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/muscle.py to muscle.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/paup.py to paup.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/rstats.py to rstats.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/seqgen.py to seqgen.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/raxml.py to raxml.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/rspr.py to rspr.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/gbif.py to gbif.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/ete.py to ete.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/biopython.py to biopython.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/ape.py to ape.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/interop/entrez.py to entrez.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/treecollectionmodel.py to treecollectionmodel.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/datasetmodel.py to datasetmodel.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/taxonmodel.py to taxonmodel.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/treemodel.py to treemodel.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/charmatrixmodel.py to charmatrixmodel.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/basemodel.py to basemodel.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/datamodel/charstatemodel.py to charstatemodel.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/reconcile.py to reconcile.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/seqmodel.py to seqmodel.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/popgensim.py to popgensim.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treecalc.py to treecalc.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/seqsim.py to seqsim.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/popgenstat.py to popgenstat.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/ncbi.py to ncbi.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/coalescent.py to coalescent.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/continuous.py to continuous.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treesim.py to treesim.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treemanip.py to treemanip.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treesum.py to treesum.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/legacy/treesplit.py to treesplit.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/tokenizer.py to tokenizer.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/ioservice.py to ioservice.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/fastawriter.py to fastawriter.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/phylipreader.py to phylipreader.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/phylipwriter.py to phylipwriter.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexuswriter.py to nexuswriter.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/newick.py to newick.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/newickyielder.py to newickyielder.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/__init__.py to __init__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/newickreader.py to newickreader.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexusyielder.py to nexusyielder.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/newickwriter.py to newickwriter.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/xmlprocessing.py to xmlprocessing.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/fastareader.py to fastareader.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexusprocessing.py to nexusprocessing.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexmlyielder.py to nexmlyielder.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexmlwriter.py to nexmlwriter.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexusreader.py to nexusreader.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/dataio/nexmlreader.py to nexmlreader.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/__main__.py to __main__.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/dendropy/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpdwRJz7.py' /usr/local/bin/python2.7 -O /tmp/tmpdwRJz7.py removing /tmp/tmpdwRJz7.py running install_egg_info Copying src/DendroPy.egg-info to /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/DendroPy-4.4.0-py2.7.egg-info running install_scripts copying build/scripts-2.7/sumlabels.py -> /construction/science/py-DendroPy/stage/usr/local/bin copying build/scripts-2.7/sumtrees.py -> /construction/science/py-DendroPy/stage/usr/local/bin changing mode of /construction/science/py-DendroPy/stage/usr/local/bin/sumlabels.py to 755 changing mode of /construction/science/py-DendroPy/stage/usr/local/bin/sumtrees.py to 755 writing list of installed files to '/construction/science/py-DendroPy/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) if [ -d "/construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/DendroPy-4.4.0-py2.7.egg-info" ]; then /bin/ls /construction/science/py-DendroPy/stage/usr/local/lib/python2.7/site-packages/DendroPy-4.4.0-py2.7.egg-info | while read f; do echo lib/python2.7/site-packages/DendroPy-4.4.0-py2.7.egg-info/${f} >> /construction/science/py-DendroPy/.PLIST.mktmp; done; fi; -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-DendroPy-4.4.0 file sizes/checksums [327]: .... done packing files [327]: .... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 7 MAR 2019 at 13:01:01 UTC Duration: 00:00:25