=> Building science/libgeodecomp Started : Friday, 8 MAR 2019 at 06:44:03 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for libgeodecomp-0.4.0_14: MPI=on: MPI (Message Passing Interface) support QT4=off: Qt 4 toolkit support SCOTCH=on: Enable graph partitioning based on Scotch/Scotch-PT SILO=on: Enable Silo dependend output ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/libgeodecomp XDG_CONFIG_HOME=/construction/science/libgeodecomp HOME=/construction/science/libgeodecomp TMPDIR="/tmp" PATH=/construction/science/libgeodecomp/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/libgeodecomp XDG_CONFIG_HOME=/construction/science/libgeodecomp HOME=/construction/science/libgeodecomp TMPDIR="/tmp" PATH=/construction/science/libgeodecomp/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="gcc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="g++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/libgeodecomp/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- CMAKE_BUILD_TYPE="release" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libgeodecomp" EXAMPLESDIR="share/examples/libgeodecomp" DATADIR="share/libgeodecomp" WWWDIR="www/libgeodecomp" ETCDIR="etc/libgeodecomp" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libgeodecomp DOCSDIR=/usr/local/share/doc/libgeodecomp EXAMPLESDIR=/usr/local/share/examples/libgeodecomp WWWDIR=/usr/local/www/libgeodecomp ETCDIR=/usr/local/etc/libgeodecomp -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSL accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> libgeodecomp-0.4.0_14 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> libgeodecomp-0.4.0_14 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libgeodecomp-0.4.0_14 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSL accepted by the user ===> Fetching all distfiles required by libgeodecomp-0.4.0_14 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSL accepted by the user ===> Fetching all distfiles required by libgeodecomp-0.4.0_14 for building => SHA256 Checksum OK for libgeodecomp-0.4.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSL accepted by the user ===> Fetching all distfiles required by libgeodecomp-0.4.0_14 for building ===> Extracting for libgeodecomp-0.4.0_14 => SHA256 Checksum OK for libgeodecomp-0.4.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for libgeodecomp-0.4.0_14 ===> Applying ports patches for libgeodecomp-0.4.0_14 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> libgeodecomp-0.4.0_14 depends on file: /usr/local/lib/libscotch.a - not found ===> Installing existing package /packages/All/scotch-6.0.4.a5_2.txz Installing scotch-6.0.4.a5_2... `-- Installing mpich2-1.5_12,5... | `-- Installing bash-5.0.2... | | `-- Installing gettext-runtime-0.19.8.1_2... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done | | `-- Installing ncurses-6.1.20190112... | | `-- Extracting ncurses-6.1.20190112: .......... done | `-- Extracting bash-5.0.2: .......... done | `-- Installing gcc5-5.5.0_6... | | `-- Installing binutils-2.32,1... | | `-- Extracting binutils-2.32,1: .......... done | | `-- Installing gmp-6.1.2_1... | | `-- Extracting gmp-6.1.2_1: .......... done | | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | | `-- Extracting mpc-1.1.0_2: ......... done | `-- Extracting gcc5-5.5.0_6: .......... done | `-- Installing libX11-1.6.7,1... | | `-- Installing libXau-1.0.8_5... | | `-- Extracting libXau-1.0.8_5: .......... done | | `-- Installing libXdmcp-1.1.2_2... | | `-- Installing xorgproto-2018.4... | | `-- Extracting xorgproto-2018.4: .......... done | | `-- Extracting libXdmcp-1.1.2_2: ......... done | | `-- Installing libxcb-1.13.1... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: .... done | | `-- Installing libxml2-2.9.8... | | `-- Extracting libxml2-2.9.8: .......... done | | `-- Extracting libxcb-1.13.1: .......... done | `-- Extracting libX11-1.6.7,1: .......... done | `-- Installing libXt-1.1.5_2,1... | | `-- Installing libICE-1.0.9_3,1... | | `-- Extracting libICE-1.0.9_3,1: .......... done | | `-- Installing libSM-1.2.3,1... | | `-- Extracting libSM-1.2.3,1: .......... done | `-- Extracting libXt-1.1.5_2,1: .......... done | `-- Installing openjdk8-8.181.13_1... | | `-- Installing alsa-lib-1.1.2_2... | | `-- Extracting alsa-lib-1.1.2_2: .......... done | | `-- Installing dejavu-2.37... | | `-- Installing fontconfig-2.12.6,1... | | | `-- Installing expat-2.2.6_1... | | | `-- Extracting expat-2.2.6_1: .......... done | | | `-- Installing freetype2-2.9.1... | | | `-- Extracting freetype2-2.9.1: .......... done | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing mkfontdir-1.0.7... | | | `-- Installing mkfontscale-1.1.3_2... | | | `-- Installing libfontenc-1.1.4... | | | `-- Extracting libfontenc-1.1.4: ......... done | | | `-- Extracting mkfontscale-1.1.3_2: ..... done | | `-- Extracting mkfontdir-1.0.7: ..... done | | `-- Extracting dejavu-2.37: .......... done | | `-- Installing giflib-5.1.4... | | `-- Extracting giflib-5.1.4: .......... done | | `-- Installing java-zoneinfo-2018.i... | | `-- Extracting java-zoneinfo-2018.i: .......... done | | `-- Installing javavmwrapper-2.6... | | `-- Extracting javavmwrapper-2.6: .......... done | | `-- Installing libXext-1.3.3_3,1... | | `-- Extracting libXext-1.3.3_3,1: .......... done | | `-- Installing libXi-1.7.9_2,1... | | `-- Installing libXfixes-5.0.3_2... | | `-- Extracting libXfixes-5.0.3_2: .......... done | | `-- Extracting libXi-1.7.9_2,1: .......... done | | `-- Installing libXrender-0.9.10_2... | | `-- Extracting libXrender-0.9.10_2: .......... done | | `-- Installing libXtst-1.2.3_2... | | `-- Extracting libXtst-1.2.3_2: .......... done | `-- Extracting openjdk8-8.181.13_1: .......... done | `-- Installing python27-2.7.15... | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libressl-2.8.3... | | `-- Extracting libressl-2.8.3: .......... done | | `-- Installing readline-7.0.5... | | `-- Extracting readline-7.0.5: .......... done | `-- Extracting python27-2.7.15: .......... done `-- Extracting mpich2-1.5_12,5: .......... done Extracting scotch-6.0.4.a5_2: .......... done Message from gcc5-5.5.0_6: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 7 or newer instead.. Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from openjdk8-8.181.13_1: ====================================================================== This OpenJDK implementation requires procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following line in /etc/fstab: proc /proc procfs rw 0 0 ====================================================================== Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from mpich2-1.5_12,5: ======================================================================= MPICH-2 has been installed under /usr/local. /!\ IMPORTANT /!\ Please change the password in /usr/local/etc/mpd.conf ======================================================================= ===> libgeodecomp-0.4.0_14 depends on file: /usr/local/lib/libscotch.a - found ===> Returning to build of libgeodecomp-0.4.0_14 ===> libgeodecomp-0.4.0_14 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.13.4.txz Installing cmake-3.13.4... `-- Installing curl-7.64.0_1... | `-- Installing ca_root_nss-3.42.1... | `-- Extracting ca_root_nss-3.42.1: ........ done | `-- Installing krb5-1.17_1... | `-- Extracting krb5-1.17_1: .......... done | `-- Installing libnghttp2-1.36.0... | `-- Extracting libnghttp2-1.36.0: .......... done `-- Extracting curl-7.64.0_1: .......... done `-- Installing jsoncpp-1.8.1_5... `-- Extracting jsoncpp-1.8.1_5: .......... done `-- Installing libarchive-3.3.3,1... | `-- Installing liblz4-1.8.3,1... | `-- Extracting liblz4-1.8.3,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.3,1: .......... done `-- Installing libuv-1.26.0... `-- Extracting libuv-1.26.0: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.13.4: .......... done Message from ca_root_nss-3.42.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> libgeodecomp-0.4.0_14 depends on file: /usr/local/bin/cmake - found ===> Returning to build of libgeodecomp-0.4.0_14 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> libgeodecomp-0.4.0_14 depends on shared library: libboost_system.so - not found ===> Installing existing package /packages/All/boost-libs-1.69.0_1.txz Installing boost-libs-1.69.0_1... `-- Installing icu-63.1_1,1... `-- Extracting icu-63.1_1,1: .......... done Extracting boost-libs-1.69.0_1: .......... done Message from boost-libs-1.69.0_1: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> libgeodecomp-0.4.0_14 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so) ===> Returning to build of libgeodecomp-0.4.0_14 ===> libgeodecomp-0.4.0_14 depends on shared library: libboost_date_time.so - found (/usr/local/lib/libboost_date_time.so) ===> libgeodecomp-0.4.0_14 depends on shared library: libboost_filesystem.so - found (/usr/local/lib/libboost_filesystem.so) ===> libgeodecomp-0.4.0_14 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> libgeodecomp-0.4.0_14 depends on shared library: libsiloh5.so - not found ===> Installing existing package /packages/All/silo-4.10.2_10.txz Installing silo-4.10.2_10... `-- Installing hdf5-1.10.1_2... | `-- Installing hdf-szip-2.1.1... | `-- Extracting hdf-szip-2.1.1: .......... done `-- Extracting hdf5-1.10.1_2: .......... done Extracting silo-4.10.2_10: .......... done ===> libgeodecomp-0.4.0_14 depends on shared library: libsiloh5.so - found (/usr/local/lib/libsiloh5.so) ===> Returning to build of libgeodecomp-0.4.0_14 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for libgeodecomp-0.4.0_14 ===> Performing out-of-source build /bin/mkdir -p /construction/science/libgeodecomp/.build -- The C compiler identification is GNU 8.1.0 -- The CXX compiler identification is GNU 8.1.0 -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at src/CMakeLists.txt:3 (find_package): By not providing "FindHPX.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "HPX", but CMake did not find one. Could not find a package configuration file provided by "HPX" with any of the following names: HPXConfig.cmake hpx-config.cmake Add the installation prefix of "HPX" to CMAKE_PREFIX_PATH or set "HPX_DIR" to a directory containing one of the above files. If "HPX" provides a separate development package or SDK, be sure it has been installed. -- Boost version: 1.69.0 -- Found the following Boost libraries: -- date_time -- filesystem -- system -- Boost version: 1.69.0 -- Found the following Boost libraries: -- serialization -- Looking for pthread.h -- Looking for pthread.h - found -- Found Threads: TRUE -- Boost version: 1.69.0 -- Found the following Boost libraries: -- thread -- chrono -- date_time -- atomic CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1776 (message): No header defined for move; skipping header check Call Stack (most recent call first): src/CMakeLists.txt:28 (find_package) -- Could NOT find Boost -- Could NOT find Boost CUDA_TOOLKIT_ROOT_DIR not found or specified -- Could NOT find CUDA (missing: CUDA_TOOLKIT_ROOT_DIR CUDA_NVCC_EXECUTABLE CUDA_INCLUDE_DIRS CUDA_CUDART_LIBRARY) -- Could NOT find OpenCL (missing: OPENCL_LIBRARIES OPENCL_INCLUDE_DIRS) -- Found MPI_C: /usr/lib/libpthread.so (found version "2.2") -- Found MPI_CXX: /usr/lib/libpthread.so (found version "2.2") -- Found MPI: TRUE (found version "2.2") -- WARNING: OpenCV was not found. Please specify OpenCV directory using OpenCV_DIR env. variable -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found PythonLibs: /usr/local/lib/libpython2.7.so (found suitable version "2.7.15", minimum required is "2") -- Could NOT find Ruby (missing: RUBY_EXECUTABLE RUBY_INCLUDE_DIR RUBY_LIBRARY) -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 6.0.4) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/local/lib/libptscotch.a;/usr/local/lib/libscotch.a;/usr/local/lib/libptscotcherr.a -- Found Silo: /usr/local/lib/libsiloh5.so -- Found unsuitable Qt version "" from NOTFOUND -- Could NOT find VisIt (missing: VisIt_INCLUDE_DIRS VisIt_LIBRARIES) -- Performing Test SUPPORTS_MARCH_NATIVE -- Performing Test SUPPORTS_MARCH_NATIVE - Success -- The following options have been configured: * ADDITIONAL_COMPILE_FLAGS=" -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native", default=" -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native" Add these flags when compiling. * CMAKE_BUILD_TYPE="Release", default="Release" Sets the compile/link options, e.g. Debug, Release... Refer to the cmake documentation for more details. * CAKE_CXX_COMPILER="/usr/bin/g++", default="/usr/bin/g++" Select the C++ compiler * CMAKE_INSTALL_PREFIX="/usr/local", default="/usr/local" Path for installation * DEBUG_LEVEL=" 0", default=" 0" Configure the amount/verbosity of debug output * LIB_LINKAGE_TYPE="SHARED", default="SHARED" Controls which type of library to build. Suggested: SHARED on Linux (creates a shared object "libgeodecomp.so"), STATIC should work for builds on Cray and Windows. * LIB_DIR="lib", default="lib" Library subdirectory (e.g. lib, lib32, lib64), useful for multilib builds * LIMIT_TESTS="false", default="false" Limit the directories of tests to run. Only tests matching the specified pattern will be run. * UNITEXEC="", default="" May be used to specify a wrapper which then calls a unit test executable. Handy if for instance the unit tests shall be run on a remote machine. * WITH_BOOST_ASIO="true", default="true" Some Boost distributions ship too old versions of ASIO which are not compatible with LibGeoDecomp. Use this flag to switch ASIO-related code off. * WITH_BOOST_MOVE="false", default="false" Enable/disable Boost.Move for move semantics (e.g. to avoid copies of vectors). * WITH_BOOST_MPI="false", default="false" Enable/disable Boost.MPI related code. * WITH_BOOST_SERIALIZATION="ON", default="ON" Explicitly disable Boost.Serialization, which isn't available on some machines (e.g. woody.rrze.uni-erlangen.de). Don't do this if you need the HPX backend. * WITH_CUDA="FALSE", default="FALSE" Enable modules which harness Nvidia CUDA GPUs * WITH_FORTRAN="false", default="false" Build Fortran examples/utilities, too * WITH_HPX="FALSE", default="0" Build those modules which require HPX * WITH_INTRINSICS="true", default="true" Switch on/off the code parts which require SSE or AVX intrinsics * WITH_LAX_VISIT_TESTS="false", default="false" Remove some of the stricter assertions from VisIt related unit tests -- VisIt sometimes produces erroneous results when running on a remote machine (e.g. for autobuilds) * WITH_LIBPTHREAD="true", default="true" Use this option to avoid linking against libpthread but instead adding -pthread to the compiler options (the former is required for CUDA when using nvcc, the latter for Android with gcc). * WITH_MPI="true", default="TRUE" If set, all MPI related components will be built. This option is required for the MPI unit tests. * WITH_OPENCL="FALSE", default="false" Enable modules for delegating to OpenCL devices * WITH_OPENCV="FALSE", default="false" Build those modules which require OpenCV * WITH_QT="false", default="FALSE" Build example codes which rely on QT4 for the GUI * WITH_SCOTCH="true", default="TRUE" Enables LibGeoDecomp to use Scotch and PT-Scotch for domain decomposition. * WITH_SILO="true", default="TRUE" Silo is a flexible output library developed by LLNL. * WITH_THREADS="true", default="true" Lets you control whether we'll use threads (e.g. boost::thread) * WITH_TYPEMAPS="FALSE", default="FALSE" Controls whether the build system should regenerate typemaps.{h,cpp}. Requires Ruby and some Unix tools. * WITH_VISIT="FALSE", default="FALSE" Activate code parts which use VisitWriter and SerialVisitWriter Files "/construction/science/libgeodecomp/.build/libgeodecomp/config.h" to "/construction/science/libgeodecomp/.build/libgeodecomp/config.h.new" are different. updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/communication//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/communication/test/parallel_mpi_1//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/communication/test/parallel_mpi_2//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/communication/test/parallel_mpi_4//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/adaptivemeshrefinement//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/ants//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/bouncingspheres//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/chromatography//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/circle//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/cars//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/gameoflife//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/gameoflife_adcirc//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/gameoflife_hpx//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/gameoflife_live//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/gameoflife3d//auto.cmake updating 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/construction/science/libgeodecomp/libgeodecomp-0.4.0/src/misc/test/parallel_openmp_1//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization/test/parallel_mpi_1//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization/test/parallel_mpi_2//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization/test/parallel_mpi_4//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization/test/parallel_openmp_1//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization/hiparsimulator//auto.cmake updating /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization/hiparsimulator/test/parallel_mpi_1//auto.cmake updating 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[ 0%] Built target code_generation --- src/CMakeFiles/geodecomp.dir/all --- Scanning dependencies of target geodecomp /usr/bin/make -f src/CMakeFiles/geodecomp.dir/build.make src/CMakeFiles/geodecomp.dir/build --- src/CMakeFiles/geodecomp.dir/communication/typemaps.cpp.o --- --- src/CMakeFiles/geodecomp.dir/io/mockinitializer.cpp.o --- --- src/CMakeFiles/geodecomp.dir/io/mockwriter.cpp.o --- --- src/CMakeFiles/geodecomp.dir/geometry/partitions/hilbertpartition.cpp.o --- --- src/CMakeFiles/geodecomp.dir/geometry/partitions/hindexingpartition.cpp.o --- --- src/CMakeFiles/geodecomp.dir/communication/typemaps.cpp.o --- [ 0%] Building CXX object src/CMakeFiles/geodecomp.dir/communication/typemaps.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/communication/typemaps.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/communication/typemaps.cpp --- src/CMakeFiles/geodecomp.dir/io/mockinitializer.cpp.o --- [ 0%] Building CXX object src/CMakeFiles/geodecomp.dir/io/mockinitializer.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/io/mockinitializer.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/io/mockinitializer.cpp --- src/CMakeFiles/geodecomp.dir/geometry/partitions/hilbertpartition.cpp.o --- [ 7%] Building CXX object src/CMakeFiles/geodecomp.dir/geometry/partitions/hilbertpartition.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/geometry/partitions/hilbertpartition.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/geometry/partitions/hilbertpartition.cpp --- src/CMakeFiles/geodecomp.dir/geometry/partitions/hindexingpartition.cpp.o --- [ 7%] Building CXX object src/CMakeFiles/geodecomp.dir/geometry/partitions/hindexingpartition.cpp.o cd /construction/science/libgeodecomp/.build/src && 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-I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/loadbalancer/oozebalancer.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/loadbalancer/oozebalancer.cpp --- src/CMakeFiles/geodecomp.dir/loadbalancer/randombalancer.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/geodecomp.dir/loadbalancer/randombalancer.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/loadbalancer/randombalancer.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/loadbalancer/randombalancer.cpp --- src/CMakeFiles/geodecomp.dir/misc/color.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/geodecomp.dir/misc/color.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/misc/color.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/misc/color.cpp --- src/CMakeFiles/geodecomp.dir/misc/patternoptimizer.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/geodecomp.dir/misc/patternoptimizer.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/misc/patternoptimizer.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/misc/patternoptimizer.cpp --- src/CMakeFiles/geodecomp.dir/misc/random.cpp.o --- [ 21%] Building CXX object src/CMakeFiles/geodecomp.dir/misc/random.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/misc/random.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/misc/random.cpp --- src/CMakeFiles/geodecomp.dir/misc/simplexoptimizer.cpp.o --- [ 21%] Building CXX object src/CMakeFiles/geodecomp.dir/misc/simplexoptimizer.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/misc/simplexoptimizer.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/misc/simplexoptimizer.cpp --- src/CMakeFiles/geodecomp.dir/misc/tempfile.cpp.o --- [ 21%] Building CXX object src/CMakeFiles/geodecomp.dir/misc/tempfile.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/misc/tempfile.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/misc/tempfile.cpp --- src/CMakeFiles/geodecomp.dir/misc/random.cpp.o --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/misc/random.cpp:1: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/CMakeFiles/geodecomp.dir/loadbalancer/randombalancer.cpp.o --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/loadbalancer/randombalancer.cpp:2: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/CMakeFiles/geodecomp.dir/parallelization/hpxsimulator.cpp.o --- [ 21%] Building CXX object src/CMakeFiles/geodecomp.dir/parallelization/hpxsimulator.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/parallelization/hpxsimulator.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization/hpxsimulator.cpp --- src/CMakeFiles/geodecomp.dir/parallelization/mocksimulator.cpp.o --- [ 28%] Building CXX object src/CMakeFiles/geodecomp.dir/parallelization/mocksimulator.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/parallelization/mocksimulator.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization/mocksimulator.cpp --- src/CMakeFiles/geodecomp.dir/parallelization/hpxsimulator/createupdategroups.cpp.o --- [ 28%] Building CXX object src/CMakeFiles/geodecomp.dir/parallelization/hpxsimulator/createupdategroups.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/parallelization/hpxsimulator/createupdategroups.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/parallelization/hpxsimulator/createupdategroups.cpp --- src/CMakeFiles/geodecomp.dir/storage/image.cpp.o --- [ 28%] Building CXX object src/CMakeFiles/geodecomp.dir/storage/image.cpp.o cd /construction/science/libgeodecomp/.build/src && /usr/bin/g++ -Dgeodecomp_EXPORTS -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/geodecomp.dir/storage/image.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/storage/image.cpp --- src/CMakeFiles/geodecomp.dir/misc/tempfile.cpp.o --- In file included from /usr/local/include/boost/filesystem/path_traits.hpp:23, from /usr/local/include/boost/filesystem/path.hpp:25, from /usr/local/include/boost/filesystem.hpp:16, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/misc/tempfile.cpp:8: /usr/local/include/boost/system/error_code.hpp:167:28: warning: 'class boost::system::error_category' has virtual functions and accessible non-virtual destructor [-Wnon-virtual-dtor] class BOOST_SYMBOL_VISIBLE error_category ^~~~~~~~~~~~~~ /usr/local/include/boost/system/error_code.hpp:275:28: warning: base class 'class boost::system::error_category' has accessible non-virtual destructor [-Wnon-virtual-dtor] class BOOST_SYMBOL_VISIBLE generic_error_category: public error_category ^~~~~~~~~~~~~~~~~~~~~~ /usr/local/include/boost/system/error_code.hpp:275:28: warning: 'class boost::system::detail::generic_error_category' has virtual functions and accessible non-virtual destructor [-Wnon-virtual-dtor] /usr/local/include/boost/system/error_code.hpp:295:28: warning: base class 'class boost::system::error_category' has accessible non-virtual destructor [-Wnon-virtual-dtor] class BOOST_SYMBOL_VISIBLE system_error_category: public error_category ^~~~~~~~~~~~~~~~~~~~~ /usr/local/include/boost/system/error_code.hpp:295:28: warning: 'class boost::system::detail::system_error_category' has virtual functions and accessible non-virtual destructor [-Wnon-virtual-dtor] In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/misc/tempfile.cpp:9: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/libgeodecomp.so --- [ 28%] Linking CXX shared library libgeodecomp.so cd /construction/science/libgeodecomp/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/geodecomp.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc5 -shared -Wl,-soname,libgeodecomp.so -o libgeodecomp.so CMakeFiles/geodecomp.dir/communication/typemaps.cpp.o CMakeFiles/geodecomp.dir/io/mockinitializer.cpp.o CMakeFiles/geodecomp.dir/io/mockwriter.cpp.o CMakeFiles/geodecomp.dir/geometry/partitions/hilbertpartition.cpp.o CMakeFiles/geodecomp.dir/geometry/partitions/hindexingpartition.cpp.o CMakeFiles/geodecomp.dir/loadbalancer/biasbalancer.cpp.o CMakeFiles/geodecomp.dir/loadbalancer/mockbalancer.cpp.o CMakeFiles/geodecomp.dir/loadbalancer/oozebalancer.cpp.o CMakeFiles/geodecomp.dir/loadbalancer/randombalancer.cpp.o CMakeFiles/geodecomp.dir/misc/color.cpp.o CMakeFiles/geodecomp.dir/misc/patternoptimizer.cpp.o CMakeFiles/geodecomp.dir/misc/random.cpp.o CMakeFiles/geodecomp.dir/misc/simplexoptimizer.cpp.o CMakeFiles/geodecomp.dir/misc/tempfile.cpp.o CMakeFiles/geodecomp.dir/parallelization/hpxsimulator.cpp.o CMakeFiles/geodecomp.dir/parallelization/mocksimulator.cpp.o CMakeFiles/geodecomp.dir/parallelization/hpxsimulator/createupdategroups.cpp.o CMakeFiles/geodecomp.dir/storage/image.cpp.o -Wl,-rpath,/usr/local/lib /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so -pthread /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 35%] Built target geodecomp --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/all --- --- src/examples/ants/CMakeFiles/ants.dir/all --- --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- --- src/examples/chromatography/CMakeFiles/chromatography.dir/all --- --- src/examples/circle/CMakeFiles/circle.dir/all --- --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/all --- /usr/bin/make -f src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/build.make src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/depend --- src/examples/ants/CMakeFiles/ants.dir/all --- /usr/bin/make -f src/examples/ants/CMakeFiles/ants.dir/build.make src/examples/ants/CMakeFiles/ants.dir/depend --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- /usr/bin/make -f src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/build.make src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/depend --- src/examples/chromatography/CMakeFiles/chromatography.dir/all --- /usr/bin/make -f src/examples/chromatography/CMakeFiles/chromatography.dir/build.make src/examples/chromatography/CMakeFiles/chromatography.dir/depend --- src/examples/circle/CMakeFiles/circle.dir/all --- /usr/bin/make -f src/examples/circle/CMakeFiles/circle.dir/build.make src/examples/circle/CMakeFiles/circle.dir/depend --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/all --- --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/depend --- --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/depend --- --- src/examples/circle/CMakeFiles/circle.dir/all --- --- src/examples/circle/CMakeFiles/circle.dir/depend --- --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/bouncingspheres /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/bouncingspheres /construction/science/libgeodecomp/.build/src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/DependInfo.cmake --- src/examples/circle/CMakeFiles/circle.dir/all --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/circle /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/circle /construction/science/libgeodecomp/.build/src/examples/circle/CMakeFiles/circle.dir/DependInfo.cmake --- src/examples/chromatography/CMakeFiles/chromatography.dir/all --- --- src/examples/chromatography/CMakeFiles/chromatography.dir/depend --- --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/all --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/adaptivemeshrefinement /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/adaptivemeshrefinement /construction/science/libgeodecomp/.build/src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/DependInfo.cmake --- src/examples/ants/CMakeFiles/ants.dir/all --- --- src/examples/ants/CMakeFiles/ants.dir/depend --- --- src/examples/chromatography/CMakeFiles/chromatography.dir/all --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/chromatography /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/chromatography /construction/science/libgeodecomp/.build/src/examples/chromatography/CMakeFiles/chromatography.dir/DependInfo.cmake --- src/examples/ants/CMakeFiles/ants.dir/all --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/ants /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/ants /construction/science/libgeodecomp/.build/src/examples/ants/CMakeFiles/ants.dir/DependInfo.cmake --- src/examples/circle/CMakeFiles/circle.dir/all --- Scanning dependencies of target circle --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/all --- Scanning dependencies of target adaptivemeshrefinement /usr/bin/make -f src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/build.make src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/build --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/main.cpp.o --- [ 35%] Building CXX object src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/adaptivemeshrefinement && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/adaptivemeshrefinement.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/adaptivemeshrefinement/main.cpp --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- Scanning dependencies of target bouncingspheres --- src/examples/ants/CMakeFiles/ants.dir/all --- Scanning dependencies of target ants /usr/bin/make -f src/examples/ants/CMakeFiles/ants.dir/build.make src/examples/ants/CMakeFiles/ants.dir/build --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- /usr/bin/make -f src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/build.make src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/build --- src/examples/circle/CMakeFiles/circle.dir/all --- /usr/bin/make -f src/examples/circle/CMakeFiles/circle.dir/build.make src/examples/circle/CMakeFiles/circle.dir/build --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/main.cpp.o --- --- src/examples/circle/CMakeFiles/circle.dir/all --- --- src/examples/circle/CMakeFiles/circle.dir/main.cpp.o --- [ 35%] Building CXX object src/examples/circle/CMakeFiles/circle.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/circle && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/circle.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/circle/main.cpp --- src/examples/chromatography/CMakeFiles/chromatography.dir/all --- Scanning dependencies of target chromatography --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- [ 35%] Building CXX object src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/main.cpp.o --- src/examples/ants/CMakeFiles/ants.dir/all --- --- src/examples/ants/CMakeFiles/ants.dir/main.cpp.o --- --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- cd /construction/science/libgeodecomp/.build/src/examples/bouncingspheres && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/bouncingspheres.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/bouncingspheres/main.cpp --- src/examples/chromatography/CMakeFiles/chromatography.dir/all --- /usr/bin/make -f src/examples/chromatography/CMakeFiles/chromatography.dir/build.make src/examples/chromatography/CMakeFiles/chromatography.dir/build --- src/examples/chromatography/CMakeFiles/chromatography.dir/main.cpp.o --- --- src/examples/ants/CMakeFiles/ants.dir/all --- [ 35%] Building CXX object src/examples/ants/CMakeFiles/ants.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/ants && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/ants.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/ants/main.cpp --- src/examples/chromatography/CMakeFiles/chromatography.dir/all --- [ 35%] Building CXX object src/examples/chromatography/CMakeFiles/chromatography.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/chromatography && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/chromatography.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/chromatography/main.cpp In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/chromatography/main.cpp:3: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/adaptivemeshrefinement/main.cpp:1: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/circle/CMakeFiles/circle.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/circle/main.cpp:1: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/bouncingspheres/main.cpp:1: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/all --- /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/adaptivemeshrefinement/main.cpp: In instantiation of 'void AMRDiffusionCell::actualUpdate(const NEIGHBORHOOD&) [with NEIGHBORHOOD = AMRDiffusionCell<>::HoodAdapter, LibGeoDecomp::Grid, LibGeoDecomp::TopologiesHelpers::Topology<2, false, false, false> > > >; int SUBLEVEL_DIM_X = 4; int SUBLEVEL_DIM_Y = 4; int SUBLEVEL_TILE_SIZE = 16; int DELTA_MAX = 10]': /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/adaptivemeshrefinement/main.cpp:282:9: required from 'void AMRDiffusionCell::update(const NEIGHBORHOOD&, int) [with NEIGHBORHOOD = LibGeoDecomp::CoordMap, LibGeoDecomp::Grid, LibGeoDecomp::TopologiesHelpers::Topology<2, false, false, false> > >; int SUBLEVEL_DIM_X = 4; int SUBLEVEL_DIM_Y = 4; int SUBLEVEL_TILE_SIZE = 16; int DELTA_MAX = 10]' /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/storage/vanillaupdatefunctor.h:30:13: required from 'void LibGeoDecomp::VanillaUpdateFunctor::operator()(const LibGeoDecomp::Streak::DIM>&, const LibGeoDecomp::Coord::DIM>&, const GRID1&, GRID2*, unsigned int) [with GRID1 = LibGeoDecomp::DisplacedGrid, LibGeoDecomp::TopologiesHelpers::Topology<2, false, false, false>, false>; GRID2 = LibGeoDecomp::DisplacedGrid, LibGeoDecomp::TopologiesHelpers::Topology<2, false, false, false>, false>; CELL = AMRDiffusionCell<>]' /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/storage/updatefunctor.h:156:41: required from 'void LibGeoDecomp::UpdateFunctorHelpers::Selector::operator()(const LibGeoDecomp::Region::DIM>&, const LibGeoDecomp::Coord::DIM>&, const LibGeoDecomp::Coord::DIM>&, const GRID1&, GRID2*, unsigned int, LibGeoDecomp::APITraits::FalseType, LibGeoDecomp::APITraits::FalseType, ANY_API) [with GRID1 = LibGeoDecomp::DisplacedGrid, LibGeoDecomp::TopologiesHelpers::Topology<2, false, false, false>, false>; GRID2 = LibGeoDecomp::DisplacedGrid, LibGeoDecomp::TopologiesHelpers::Topology<2, false, false, false>, false>; ANY_API = LibGeoDecomp::APITraits::FalseType; CELL = AMRDiffusionCell<>]' /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/storage/updatefunctor.h:185:47: required from 'void LibGeoDecomp::UpdateFunctor::operator()(const LibGeoDecomp::Region::DIM>&, const LibGeoDecomp::Coord::DIM>&, const LibGeoDecomp::Coord::DIM>&, const GRID1&, GRID2*, unsigned int) [with GRID1 = LibGeoDecomp::DisplacedGrid, LibGeoDecomp::TopologiesHelpers::Topology<2, false, false, false>, false>; GRID2 = LibGeoDecomp::DisplacedGrid, LibGeoDecomp::TopologiesHelpers::Topology<2, false, false, false>, false>; CELL = AMRDiffusionCell<>]' /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/parallelization/serialsimulator.h:133:35: required from 'void LibGeoDecomp::SerialSimulator::nanoStep(const unsigned int&) [with CELL_TYPE = AMRDiffusionCell<>]' /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/parallelization/serialsimulator.h:84:13: required from 'void LibGeoDecomp::SerialSimulator::step(LibGeoDecomp::SerialSimulator::SteererFeedback*) [with CELL_TYPE = AMRDiffusionCell<>; LibGeoDecomp::SerialSimulator::SteererFeedback = LibGeoDecomp::Steerer >::SteererFeedback]' /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/parallelization/serialsimulator.h:109:13: required from 'void LibGeoDecomp::SerialSimulator::run() [with CELL_TYPE = AMRDiffusionCell<>]' /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/adaptivemeshrefinement/main.cpp:661:13: required from here /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/adaptivemeshrefinement/main.cpp:372:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] for (int i = 0; i < sublevel[0].size(); ++i) { --- src/examples/ants/CMakeFiles/ants.dir/all --- --- src/examples/ants/ants --- [ 42%] Linking CXX executable ants cd /construction/science/libgeodecomp/.build/src/examples/ants && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ants.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/ants.dir/main.cpp.o -o ants -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 42%] Built target ants --- src/examples/gameoflife/CMakeFiles/gameoflife.dir/all --- /usr/bin/make -f src/examples/gameoflife/CMakeFiles/gameoflife.dir/build.make src/examples/gameoflife/CMakeFiles/gameoflife.dir/depend --- src/examples/gameoflife/CMakeFiles/gameoflife.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/gameoflife /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/gameoflife /construction/science/libgeodecomp/.build/src/examples/gameoflife/CMakeFiles/gameoflife.dir/DependInfo.cmake Scanning dependencies of target gameoflife /usr/bin/make -f src/examples/gameoflife/CMakeFiles/gameoflife.dir/build.make src/examples/gameoflife/CMakeFiles/gameoflife.dir/build --- src/examples/gameoflife/CMakeFiles/gameoflife.dir/main.cpp.o --- [ 42%] Building CXX object src/examples/gameoflife/CMakeFiles/gameoflife.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/gameoflife && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/gameoflife.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/gameoflife/main.cpp --- src/examples/bouncingspheres/CMakeFiles/bouncingspheres.dir/all --- --- src/examples/bouncingspheres/bouncingspheres --- [ 42%] Linking CXX executable bouncingspheres cd /construction/science/libgeodecomp/.build/src/examples/bouncingspheres && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/bouncingspheres.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/bouncingspheres.dir/main.cpp.o -o bouncingspheres -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 42%] Built target bouncingspheres --- src/examples/globalreductions/CMakeFiles/globalreductions.dir/all --- /usr/bin/make -f src/examples/globalreductions/CMakeFiles/globalreductions.dir/build.make src/examples/globalreductions/CMakeFiles/globalreductions.dir/depend --- src/examples/globalreductions/CMakeFiles/globalreductions.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/globalreductions /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/globalreductions /construction/science/libgeodecomp/.build/src/examples/globalreductions/CMakeFiles/globalreductions.dir/DependInfo.cmake Scanning dependencies of target globalreductions /usr/bin/make -f src/examples/globalreductions/CMakeFiles/globalreductions.dir/build.make src/examples/globalreductions/CMakeFiles/globalreductions.dir/build --- src/examples/globalreductions/CMakeFiles/globalreductions.dir/main.cpp.o --- [ 42%] Building CXX object src/examples/globalreductions/CMakeFiles/globalreductions.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/globalreductions && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/globalreductions.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/globalreductions/main.cpp --- src/examples/chromatography/CMakeFiles/chromatography.dir/all --- --- src/examples/chromatography/chromatography --- [ 50%] Linking CXX executable chromatography cd /construction/science/libgeodecomp/.build/src/examples/chromatography && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chromatography.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/chromatography.dir/main.cpp.o -o chromatography -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 50%] Built target chromatography --- src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/all --- /usr/bin/make -f src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/build.make src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/depend --- src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/hardwarefluke /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/hardwarefluke /construction/science/libgeodecomp/.build/src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/DependInfo.cmake Scanning dependencies of target hardwarefluke /usr/bin/make -f src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/build.make src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/build --- src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/main.cpp.o --- [ 50%] Building CXX object src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/hardwarefluke && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/hardwarefluke.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/hardwarefluke/main.cpp --- src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/all --- --- src/examples/adaptivemeshrefinement/adaptivemeshrefinement --- [ 50%] Linking CXX executable adaptivemeshrefinement cd /construction/science/libgeodecomp/.build/src/examples/adaptivemeshrefinement && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/adaptivemeshrefinement.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/adaptivemeshrefinement.dir/main.cpp.o -o adaptivemeshrefinement -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 50%] Built target adaptivemeshrefinement --- src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/all --- /usr/bin/make -f src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/build.make src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/depend --- src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/jacobi2d /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/jacobi2d /construction/science/libgeodecomp/.build/src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/DependInfo.cmake Scanning dependencies of target jacobi2d /usr/bin/make -f src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/build.make src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/build --- src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/main.cpp.o --- [ 50%] Building CXX object src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/jacobi2d && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/jacobi2d.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/jacobi2d/main.cpp --- src/examples/circle/CMakeFiles/circle.dir/all --- --- src/examples/circle/circle --- [ 50%] Linking CXX executable circle cd /construction/science/libgeodecomp/.build/src/examples/circle && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/circle.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/circle.dir/main.cpp.o -o circle -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 50%] Built target circle --- src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/all --- /usr/bin/make -f src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/build.make src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/depend --- src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/jacobi3d /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/jacobi3d /construction/science/libgeodecomp/.build/src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/DependInfo.cmake Scanning dependencies of target jacobi3d /usr/bin/make -f src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/build.make src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/build --- src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/main.cpp.o --- [ 57%] Building CXX object src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/jacobi3d && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/jacobi3d.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/jacobi3d/main.cpp --- src/examples/globalreductions/CMakeFiles/globalreductions.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/globalreductions/main.cpp:1: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/hardwarefluke/main.cpp:1: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/jacobi3d/main.cpp:4: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/gameoflife/CMakeFiles/gameoflife.dir/all --- --- src/examples/gameoflife/gameoflife --- [ 64%] Linking CXX executable gameoflife cd /construction/science/libgeodecomp/.build/src/examples/gameoflife && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gameoflife.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/gameoflife.dir/main.cpp.o -o gameoflife -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 64%] Built target gameoflife --- src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/all --- /usr/bin/make -f src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/build.make src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/depend --- src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/jacobi3dupdateline /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/jacobi3dupdateline /construction/science/libgeodecomp/.build/src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/DependInfo.cmake Scanning dependencies of target jacobi3dupdateline /usr/bin/make -f src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/build.make src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/build --- src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/main.cpp.o --- [ 64%] Building CXX object src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/jacobi3dupdateline && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/jacobi3dupdateline.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/jacobi3dupdateline/main.cpp --- src/examples/jacobi2d/CMakeFiles/jacobi2d.dir/all --- --- src/examples/jacobi2d/jacobi2d --- [ 64%] Linking CXX executable jacobi2d cd /construction/science/libgeodecomp/.build/src/examples/jacobi2d && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/jacobi2d.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/jacobi2d.dir/main.cpp.o -o jacobi2d -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 64%] Built target jacobi2d --- src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/all --- /usr/bin/make -f src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/build.make src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/depend --- src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/latticeboltzmann /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/latticeboltzmann /construction/science/libgeodecomp/.build/src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/DependInfo.cmake Scanning dependencies of target latticeboltzmann /usr/bin/make -f src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/build.make src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/build --- src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/main.cpp.o --- [ 71%] Building CXX object src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/latticeboltzmann && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/latticeboltzmann.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/latticeboltzmann/main.cpp --- src/examples/globalreductions/CMakeFiles/globalreductions.dir/all --- --- src/examples/globalreductions/globalreductions --- [ 71%] Linking CXX executable globalreductions cd /construction/science/libgeodecomp/.build/src/examples/globalreductions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/globalreductions.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/globalreductions.dir/main.cpp.o -o globalreductions -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 71%] Built target globalreductions --- src/examples/voronoi/CMakeFiles/voronoi.dir/all --- /usr/bin/make -f src/examples/voronoi/CMakeFiles/voronoi.dir/build.make src/examples/voronoi/CMakeFiles/voronoi.dir/depend --- src/examples/voronoi/CMakeFiles/voronoi.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/voronoi /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/voronoi /construction/science/libgeodecomp/.build/src/examples/voronoi/CMakeFiles/voronoi.dir/DependInfo.cmake Scanning dependencies of target voronoi /usr/bin/make -f src/examples/voronoi/CMakeFiles/voronoi.dir/build.make src/examples/voronoi/CMakeFiles/voronoi.dir/build --- src/examples/voronoi/CMakeFiles/voronoi.dir/main.cpp.o --- [ 78%] Building CXX object src/examples/voronoi/CMakeFiles/voronoi.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/voronoi && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/voronoi.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/voronoi/main.cpp --- src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/jacobi3dupdateline/main.cpp:4: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/hardwarefluke/CMakeFiles/hardwarefluke.dir/all --- --- src/examples/hardwarefluke/hardwarefluke --- [ 85%] Linking CXX executable hardwarefluke cd /construction/science/libgeodecomp/.build/src/examples/hardwarefluke && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/hardwarefluke.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/hardwarefluke.dir/main.cpp.o -o hardwarefluke -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 85%] Built target hardwarefluke --- src/examples/wing/CMakeFiles/wing.dir/all --- /usr/bin/make -f src/examples/wing/CMakeFiles/wing.dir/build.make src/examples/wing/CMakeFiles/wing.dir/depend --- src/examples/wing/CMakeFiles/wing.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/wing /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/wing /construction/science/libgeodecomp/.build/src/examples/wing/CMakeFiles/wing.dir/DependInfo.cmake Scanning dependencies of target wing /usr/bin/make -f src/examples/wing/CMakeFiles/wing.dir/build.make src/examples/wing/CMakeFiles/wing.dir/build --- src/examples/wing/CMakeFiles/wing.dir/main.cpp.o --- [ 85%] Building CXX object src/examples/wing/CMakeFiles/wing.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/wing && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/wing.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/wing/main.cpp --- src/examples/voronoi/CMakeFiles/voronoi.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/voronoi/main.cpp:1: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/jacobi3d/CMakeFiles/jacobi3d.dir/all --- --- src/examples/jacobi3d/jacobi3d --- [ 85%] Linking CXX executable jacobi3d cd /construction/science/libgeodecomp/.build/src/examples/jacobi3d && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/jacobi3d.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/jacobi3d.dir/main.cpp.o -o jacobi3d -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 85%] Built target jacobi3d --- src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/all --- /usr/bin/make -f src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/build.make src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/depend --- src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/redblackgaussseidel /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/redblackgaussseidel /construction/science/libgeodecomp/.build/src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/DependInfo.cmake Scanning dependencies of target redblackgaussseidel /usr/bin/make -f src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/build.make src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/build --- src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/main.cpp.o --- [ 85%] Building CXX object src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/examples/redblackgaussseidel && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/redblackgaussseidel.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/redblackgaussseidel/main.cpp --- src/examples/voronoi/CMakeFiles/voronoi.dir/all --- --- src/examples/voronoi/voronoi --- [ 85%] Linking CXX executable voronoi cd /construction/science/libgeodecomp/.build/src/examples/voronoi && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/voronoi.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/voronoi.dir/main.cpp.o -o voronoi -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 85%] Built target voronoi --- src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/all --- /usr/bin/make -f src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/build.make src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/depend --- src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/testbed/parallelperformancetests /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/testbed/parallelperformancetests /construction/science/libgeodecomp/.build/src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/DependInfo.cmake Scanning dependencies of target parallelperformancetests /usr/bin/make -f src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/build.make src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/build --- src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/main.cpp.o --- [ 85%] Building CXX object src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/testbed/parallelperformancetests && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/parallelperformancetests.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/testbed/parallelperformancetests/main.cpp --- src/examples/latticeboltzmann/CMakeFiles/latticeboltzmann.dir/all --- --- src/examples/latticeboltzmann/latticeboltzmann --- [ 85%] Linking CXX executable latticeboltzmann cd /construction/science/libgeodecomp/.build/src/examples/latticeboltzmann && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/latticeboltzmann.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/latticeboltzmann.dir/main.cpp.o -o latticeboltzmann -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 85%] Built target latticeboltzmann --- src/testbed/performancetests/CMakeFiles/performancetests.dir/all --- /usr/bin/make -f src/testbed/performancetests/CMakeFiles/performancetests.dir/build.make src/testbed/performancetests/CMakeFiles/performancetests.dir/depend --- src/testbed/performancetests/CMakeFiles/performancetests.dir/depend --- cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/testbed/performancetests /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/testbed/performancetests /construction/science/libgeodecomp/.build/src/testbed/performancetests/CMakeFiles/performancetests.dir/DependInfo.cmake Scanning dependencies of target performancetests /usr/bin/make -f src/testbed/performancetests/CMakeFiles/performancetests.dir/build.make src/testbed/performancetests/CMakeFiles/performancetests.dir/build --- src/testbed/performancetests/CMakeFiles/performancetests.dir/main.cpp.o --- [ 92%] Building CXX object src/testbed/performancetests/CMakeFiles/performancetests.dir/main.cpp.o cd /construction/science/libgeodecomp/.build/src/testbed/performancetests && /usr/bin/g++ -I/usr/local/include -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/lib/libflatarray/src -I/construction/science/libgeodecomp/libgeodecomp-0.4.0/src -I/construction/science/libgeodecomp/.build -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing -o CMakeFiles/performancetests.dir/main.cpp.o -c /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/testbed/performancetests/main.cpp --- src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/redblackgaussseidel/main.cpp:5: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/jacobi3dupdateline/CMakeFiles/jacobi3dupdateline.dir/all --- --- src/examples/jacobi3dupdateline/jacobi3dupdateline --- [ 92%] Linking CXX executable jacobi3dupdateline cd /construction/science/libgeodecomp/.build/src/examples/jacobi3dupdateline && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/jacobi3dupdateline.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/jacobi3dupdateline.dir/main.cpp.o -o jacobi3dupdateline -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [ 92%] Built target jacobi3dupdateline --- src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/all --- In file included from /usr/local/include/boost/random/detail/integer_log2.hpp:19, from /usr/local/include/boost/random/detail/large_arithmetic.hpp:19, from /usr/local/include/boost/random/detail/const_mod.hpp:23, from /usr/local/include/boost/random/detail/seed_impl.hpp:26, from /usr/local/include/boost/random/mersenne_twister.hpp:30, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/misc/random.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp/geometry/voronoimesher.h:7, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/libgeodecomp.h:24, from /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/testbed/parallelperformancetests/main.cpp:2: /usr/local/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use instead. BOOST_HEADER_DEPRECATED(""); ^ --- src/examples/wing/CMakeFiles/wing.dir/all --- --- src/examples/wing/wing --- [100%] Linking CXX executable wing cd /construction/science/libgeodecomp/.build/src/examples/wing && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/wing.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/wing.dir/main.cpp.o -o wing -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [100%] Built target wing --- src/examples/redblackgaussseidel/CMakeFiles/redblackgaussseidel.dir/all --- --- src/examples/redblackgaussseidel/redblackgaussseidel --- [100%] Linking CXX executable redblackgaussseidel cd /construction/science/libgeodecomp/.build/src/examples/redblackgaussseidel && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/redblackgaussseidel.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/redblackgaussseidel.dir/main.cpp.o -o redblackgaussseidel -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [100%] Built target redblackgaussseidel --- src/testbed/parallelperformancetests/CMakeFiles/parallelperformancetests.dir/all --- --- src/testbed/parallelperformancetests/parallelperformancetests --- [100%] Linking CXX executable parallelperformancetests cd /construction/science/libgeodecomp/.build/src/testbed/parallelperformancetests && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/parallelperformancetests.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/parallelperformancetests.dir/main.cpp.o -o parallelperformancetests -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [100%] Built target parallelperformancetests --- src/testbed/performancetests/CMakeFiles/performancetests.dir/all --- --- src/testbed/performancetests/performancetests --- [100%] Linking CXX executable performancetests cd /construction/science/libgeodecomp/.build/src/testbed/performancetests && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/performancetests.dir/link.txt --verbose=1 /usr/bin/g++ -pipe -O2 -fno-strict-aliasing -Wall -Wno-sign-promo -Wnon-virtual-dtor -march=native -fopenmp -pipe -O2 -fno-strict-aliasing CMakeFiles/performancetests.dir/main.cpp.o -o performancetests -Wl,-rpath,/construction/science/libgeodecomp/.build/src:/usr/local/lib ../../libgeodecomp.so -pthread /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_date_time.so /usr/local/lib/libboost_filesystem.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_thread.so /usr/local/lib/libboost_chrono.so /usr/local/lib/libboost_atomic.so /usr/local/lib/libsiloh5.so /usr/local/lib/libptscotch.a /usr/local/lib/libscotch.a /usr/local/lib/libptscotcherr.a -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so -lpthread -lexecinfo /usr/local/lib/libmpichcxx.so /usr/local/lib/libmpich.so /usr/local/lib/libopa.so /usr/local/lib/libmpl.so [100%] Built target performancetests /usr/local/bin/cmake -E cmake_progress_start /construction/science/libgeodecomp/.build/CMakeFiles 0 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for libgeodecomp-0.4.0_14 ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/science/libgeodecomp/libgeodecomp-0.4.0 -B/construction/science/libgeodecomp/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/libgeodecomp/.build/CMakeFiles /construction/science/libgeodecomp/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/code_generation.dir/build.make src/CMakeFiles/code_generation.dir/depend cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src /construction/science/libgeodecomp/.build/src/CMakeFiles/code_generation.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/code_generation.dir/build.make src/CMakeFiles/code_generation.dir/build cd /construction/science/libgeodecomp/.build/src && echo Code\ generation\ done. Code generation done. [ 0%] Built target code_generation /usr/bin/make -f src/CMakeFiles/geodecomp.dir/build.make src/CMakeFiles/geodecomp.dir/depend cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src /construction/science/libgeodecomp/.build/src/CMakeFiles/geodecomp.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/geodecomp.dir/build.make src/CMakeFiles/geodecomp.dir/build [ 35%] Built target geodecomp /usr/bin/make -f src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/build.make src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/depend cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/adaptivemeshrefinement /construction/science/libgeodecomp/.build /construction/science/libgeodecomp/.build/src/examples/adaptivemeshrefinement /construction/science/libgeodecomp/.build/src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/DependInfo.cmake /usr/bin/make -f src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/build.make src/examples/adaptivemeshrefinement/CMakeFiles/adaptivemeshrefinement.dir/build [ 35%] Built target adaptivemeshrefinement /usr/bin/make -f src/examples/ants/CMakeFiles/ants.dir/build.make src/examples/ants/CMakeFiles/ants.dir/depend cd /construction/science/libgeodecomp/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/libgeodecomp/libgeodecomp-0.4.0 /construction/science/libgeodecomp/libgeodecomp-0.4.0/src/examples/ants /construction/science/libgeodecomp/.build 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/construction/science/libgeodecomp/stage/usr/local/lib/cmake/libgeodecomp/libgeodecomp-targets-release.cmake ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for libgeodecomp-0.4.0_14 file sizes/checksums [198]: .. done packing files [198]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 8 MAR 2019 at 06:49:32 UTC Duration: 00:05:29