=> Building science/erkale@parallel Started : Sunday, 17 MAR 2019 at 17:05:55 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for erkale-g20190118: ====> Linear algebra library: you have to select exactly one of them NETLIB=on: Blas implementation from Netlib OPENBLAS=off: OpenBLAS blas implementation ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" PKG_CONFIG=pkgconf XDG_DATA_HOME=/construction/science/erkale XDG_CONFIG_HOME=/construction/science/erkale HOME=/construction/science/erkale TMPDIR="/tmp" PATH=/construction/science/erkale/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/construction/science/erkale XDG_CONFIG_HOME=/construction/science/erkale HOME=/construction/science/erkale TMPDIR="/tmp" PATH=/construction/science/erkale/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="clang60" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="clang-cpp60" CPPFLAGS="" LDFLAGS=" /usr/local/lib/libcblas.so /usr/local/lib/liblapack.so /usr/local/lib/libblas.so -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -L/usr/local/lib " LIBS="" CXX="clang++60" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/erkale/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- SUFFIX="_omp" CMAKE_BUILD_TYPE="release" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/erkale" EXAMPLESDIR="share/examples/erkale" DATADIR="share/erkale" WWWDIR="www/erkale" ETCDIR="etc/erkale" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/erkale DOCSDIR=/usr/local/share/doc/erkale EXAMPLESDIR=/usr/local/share/examples/erkale WWWDIR=/usr/local/www/erkale ETCDIR=/usr/local/etc/erkale -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> erkale-g20190118 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> erkale-g20190118 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of erkale-g20190118 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by erkale-g20190118 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by erkale-g20190118 for building => SHA256 Checksum OK for susilehtola-erkale-g20190118-4bd3930_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by erkale-g20190118 for building ===> Extracting for erkale-g20190118 => SHA256 Checksum OK for susilehtola-erkale-g20190118-4bd3930_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for erkale-g20190118 ===> Applying ports patches for erkale-g20190118 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> erkale-g20190118 depends on package: armadillo>0 - not found ===> Installing existing package /packages/All/armadillo-9.200.7.txz Installing armadillo-9.200.7... `-- Installing arpack-ng-3.6.3_2... | `-- Installing blas-3.5.0_5... | | `-- Installing gcc5-5.5.0_6... | | `-- Installing binutils-2.32,1... | | | `-- Installing gettext-runtime-0.19.8.1_2... | | | `-- Installing indexinfo-0.3.1... | | | `-- Extracting indexinfo-0.3.1: .... done | | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done | | `-- Extracting binutils-2.32,1: .......... done | | `-- Installing gmp-6.1.2_1... | | `-- Extracting gmp-6.1.2_1: .......... done | | `-- Installing mpc-1.1.0_2... | | | `-- Installing mpfr-4.0.2... | | | `-- Extracting mpfr-4.0.2: .......... done | | `-- Extracting mpc-1.1.0_2: ......... done | | `-- Extracting gcc5-5.5.0_6: .......... done | `-- Extracting blas-3.5.0_5: ....... done | `-- Installing lapack-3.5.0_6... | `-- Extracting lapack-3.5.0_6: .......... done | `-- Installing mpich-3.2.1_3... | | `-- Installing hwloc-1.11.11... | | `-- Installing libpciaccess-0.13.5... | | | `-- Installing pciids-20190213... | | | `-- Extracting pciids-20190213: ..... done | | `-- Extracting libpciaccess-0.13.5: ......... done | | `-- Installing libxml2-2.9.8... | | `-- Extracting libxml2-2.9.8: .......... done | | `-- Extracting hwloc-1.11.11: .......... done | `-- Extracting mpich-3.2.1_3: .......... done `-- Extracting arpack-ng-3.6.3_2: .......... done `-- Installing boost-libs-1.69.0_1... | `-- Installing icu-63.1_1,1... | `-- Extracting icu-63.1_1,1: .......... done `-- Extracting boost-libs-1.69.0_1: .......... done `-- Installing hdf-szip-2.1.1... `-- Extracting hdf-szip-2.1.1: .......... done `-- Installing hdf5-1.10.1_2... `-- Extracting hdf5-1.10.1_2: .......... done `-- Installing openblas-0.2.20_7,1... `-- Extracting openblas-0.2.20_7,1: ......... done `-- Installing superlu-5.2.1_6... `-- Extracting superlu-5.2.1_6: .......... done Extracting armadillo-9.200.7: .......... done Message from gcc5-5.5.0_6: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 7 or newer instead.. Message from mpich-3.2.1_3: ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from boost-libs-1.69.0_1: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> erkale-g20190118 depends on package: armadillo>0 - found ===> Returning to build of erkale-g20190118 ===> erkale-g20190118 depends on executable: clang60 - not found ===> Installing existing package /packages/All/llvm60-6.0.1_6.txz Installing llvm60-6.0.1_6... `-- Installing libedit-3.1.20181209_2,1... | `-- Installing ncurses-6.1.20190112... | `-- Extracting ncurses-6.1.20190112: .......... done `-- Extracting libedit-3.1.20181209_2,1: .......... done `-- Installing perl5-5.28.1... `-- Extracting perl5-5.28.1: .......... done Extracting llvm60-6.0.1_6: .......... done Message from perl5-5.28.1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> erkale-g20190118 depends on executable: clang60 - found ===> Returning to build of erkale-g20190118 ===> erkale-g20190118 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.13.4.txz Installing cmake-3.13.4... `-- Installing curl-7.64.0_1... | `-- Installing ca_root_nss-3.42.1... | `-- Extracting ca_root_nss-3.42.1: ........ done | `-- Installing krb5-1.17_1... | | `-- Installing libressl-2.8.3... | | `-- Extracting libressl-2.8.3: .......... done | | `-- Installing readline-7.0.5... | | `-- Extracting readline-7.0.5: .......... done | `-- Extracting krb5-1.17_1: .......... done | `-- Installing libnghttp2-1.36.0... | `-- Extracting libnghttp2-1.36.0: .......... done `-- Extracting curl-7.64.0_1: .......... done `-- Installing expat-2.2.6_1... `-- Extracting expat-2.2.6_1: .......... done `-- Installing jsoncpp-1.8.1_5... `-- Extracting jsoncpp-1.8.1_5: .......... done `-- Installing libarchive-3.3.3,1... | `-- Installing liblz4-1.8.3,1... | `-- Extracting liblz4-1.8.3,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.3,1: .......... done `-- Installing libuv-1.26.0... `-- Extracting libuv-1.26.0: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.13.4: .......... done Message from ca_root_nss-3.42.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> erkale-g20190118 depends on file: /usr/local/bin/cmake - found ===> Returning to build of erkale-g20190118 ===> erkale-g20190118 depends on executable: gfortran5 - found ===> erkale-g20190118 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.6.0,1.txz Installing pkgconf-1.6.0,1... Extracting pkgconf-1.6.0,1: .......... done ===> erkale-g20190118 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of erkale-g20190118 ===> erkale-g20190118 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> erkale-g20190118 depends on shared library: libderiv.so - not found ===> Installing existing package /packages/All/libint-1.2.1_1.txz Installing libint-1.2.1_1... Extracting libint-1.2.1_1: .......... done ===> erkale-g20190118 depends on shared library: libderiv.so - found (/usr/local/lib/libderiv.so) ===> Returning to build of erkale-g20190118 ===> erkale-g20190118 depends on shared library: libgsl.so - not found ===> Installing existing package /packages/All/gsl-2.5_1.txz Installing gsl-2.5_1... Extracting gsl-2.5_1: .......... done ===> erkale-g20190118 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> Returning to build of erkale-g20190118 ===> erkale-g20190118 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> erkale-g20190118 depends on shared library: libint.so - found (/usr/local/lib/libint.so) ===> erkale-g20190118 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> erkale-g20190118 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so) ===> erkale-g20190118 depends on shared library: libxc.so - not found ===> Installing existing package /packages/All/libxc-4.2.3_1.txz Installing libxc-4.2.3_1... Extracting libxc-4.2.3_1: .......... done ===> erkale-g20190118 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so) ===> Returning to build of erkale-g20190118 ===> erkale-g20190118 depends on shared library: libcblas.so - not found ===> Installing existing package /packages/All/cblas-1.0_10.txz Installing cblas-1.0_10... Extracting cblas-1.0_10: ......... done Message from cblas-1.0_10: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> erkale-g20190118 depends on shared library: libcblas.so - found (/usr/local/lib/libcblas.so) ===> Returning to build of erkale-g20190118 ===> erkale-g20190118 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> erkale-g20190118 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for erkale-g20190118 ===> Performing out-of-source build /bin/mkdir -p /construction/science/erkale/.build -- The C compiler identification is Clang 6.0.1 -- The CXX compiler identification is Clang 6.0.1 -- Check for working C compiler: /usr/local/bin/clang60 -- Check for working C compiler: /usr/local/bin/clang60 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/local/bin/clang++60 -- Check for working CXX compiler: /usr/local/bin/clang++60 -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The Fortran compiler identification is GNU 5.5.0 -- Check for working Fortran compiler: /usr/local/bin/gfortran5 -- Check for working Fortran compiler: /usr/local/bin/gfortran5 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/local/bin/gfortran5 supports Fortran 90 -- Checking whether /usr/local/bin/gfortran5 supports Fortran 90 -- yes Using /usr/local/share/erkale/basis as default basis set repository. -- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES) -- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) -- Found OpenMP_Fortran: -fopenmp (found version "4.0") -- Could NOT find OpenMP (missing: OpenMP_C_FOUND OpenMP_CXX_FOUND) (found version "4.0") -- Found BLAS: -lblas -- Looking for pthread.h -- Looking for pthread.h - found -- Found Threads: TRUE -- A library with LAPACK API found. LAPACK headers are in LAPACK library is -llapack -- Found Armadillo: /usr/local/lib/libarmadillo.so (found version "9.200.7") ARMADILLO headers are in /usr/local/include ARMADILLO library is /usr/local/lib/libarmadillo.so -- Found PkgConfig: pkgconf (found version "1.6.0") -- Checking for module 'gsl' -- Found gsl, version 2.5 -- Found GSL GSL headers are in /usr/local/include GSL library is /usr/local/lib/libgsl.so -- Checking for module 'libxc' -- Found libxc, version 4.2.3 -- Found LIBXC libxc headers are in /usr/local/include libxc linker flags are /usr/local/lib/libxc.so libint headers are in /usr/include libint linker flags are -lint -lderiv -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.1") HDF5 headers are in /usr/local/include HDF5 linker flags are /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so Can run tests. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS -- Build files have been written to: /construction/science/erkale/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for erkale-g20190118 /usr/local/bin/cmake -S/construction/science/erkale/erkale-4bd3930 -B/construction/science/erkale/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/erkale/.build/CMakeFiles /construction/science/erkale/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- src/CMakeFiles/eriworker_gentransform.dir/all --- --- src/completeness/CMakeFiles/liberkale_cmp.dir/all --- --- src/CMakeFiles/eriworker_gentransform.dir/all --- /usr/bin/make -f src/CMakeFiles/eriworker_gentransform.dir/build.make src/CMakeFiles/eriworker_gentransform.dir/depend --- src/completeness/CMakeFiles/liberkale_cmp.dir/all --- /usr/bin/make -f src/completeness/CMakeFiles/liberkale_cmp.dir/build.make src/completeness/CMakeFiles/liberkale_cmp.dir/depend --- src/CMakeFiles/eriworker_gentransform.dir/all --- --- src/CMakeFiles/eriworker_gentransform.dir/depend --- cd /construction/science/erkale/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/erkale/erkale-4bd3930 /construction/science/erkale/erkale-4bd3930/src /construction/science/erkale/.build /construction/science/erkale/.build/src /construction/science/erkale/.build/src/CMakeFiles/eriworker_gentransform.dir/DependInfo.cmake --- src/completeness/CMakeFiles/liberkale_cmp.dir/all --- --- src/completeness/CMakeFiles/liberkale_cmp.dir/depend --- cd /construction/science/erkale/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/erkale/erkale-4bd3930 /construction/science/erkale/erkale-4bd3930/src/completeness /construction/science/erkale/.build /construction/science/erkale/.build/src/completeness /construction/science/erkale/.build/src/completeness/CMakeFiles/liberkale_cmp.dir/DependInfo.cmake Scanning dependencies of target liberkale_cmp /usr/bin/make -f src/completeness/CMakeFiles/liberkale_cmp.dir/build.make src/completeness/CMakeFiles/liberkale_cmp.dir/build --- src/completeness/CMakeFiles/liberkale_cmp.dir/completeness_profile.cpp.o --- --- src/completeness/CMakeFiles/liberkale_cmp.dir/optimize_completeness.cpp.o --- --- src/completeness/CMakeFiles/liberkale_cmp.dir/completeness_profile.cpp.o --- [ 1%] Building CXX object src/completeness/CMakeFiles/liberkale_cmp.dir/completeness_profile.cpp.o cd /construction/science/erkale/.build/src/completeness && /usr/local/bin/clang++60 -DARMA_DONT_USE_WRAPPER -Dliberkale_cmp_EXPORTS -I/construction/science/erkale/erkale-4bd3930/src -I/usr/local/include -pipe -O2 -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale_cmp.dir/completeness_profile.cpp.o -c /construction/science/erkale/erkale-4bd3930/src/completeness/completeness_profile.cpp --- src/completeness/CMakeFiles/liberkale_cmp.dir/optimize_completeness.cpp.o --- [ 2%] Building CXX object src/completeness/CMakeFiles/liberkale_cmp.dir/optimize_completeness.cpp.o cd /construction/science/erkale/.build/src/completeness && /usr/local/bin/clang++60 -DARMA_DONT_USE_WRAPPER -Dliberkale_cmp_EXPORTS -I/construction/science/erkale/erkale-4bd3930/src -I/usr/local/include -pipe -O2 -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/liberkale_cmp.dir/optimize_completeness.cpp.o -c /construction/science/erkale/erkale-4bd3930/src/completeness/optimize_completeness.cpp --- src/CMakeFiles/eriworker_gentransform.dir/all --- Scanning dependencies of target eriworker_gentransform /usr/bin/make -f src/CMakeFiles/eriworker_gentransform.dir/build.make src/CMakeFiles/eriworker_gentransform.dir/build --- src/CMakeFiles/eriworker_gentransform.dir/eriworker_gentransform.cpp.o --- --- src/CMakeFiles/eriworker_gentransform.dir/solidharmonics.cpp.o --- --- src/CMakeFiles/eriworker_gentransform.dir/mathf.cpp.o --- --- src/CMakeFiles/eriworker_gentransform.dir/eriworker_gentransform.cpp.o --- [ 3%] Building CXX object src/CMakeFiles/eriworker_gentransform.dir/eriworker_gentransform.cpp.o cd /construction/science/erkale/.build/src && /usr/local/bin/clang++60 -DARMA_DONT_USE_WRAPPER -I/construction/science/erkale/erkale-4bd3930/src -I/usr/local/include -pipe -O2 -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -pipe -O2 -fno-strict-aliasing -o CMakeFiles/eriworker_gentransform.dir/eriworker_gentransform.cpp.o -c /construction/science/erkale/erkale-4bd3930/src/eriworker_gentransform.cpp --- src/CMakeFiles/eriworker_gentransform.dir/solidharmonics.cpp.o --- [ 4%] Building CXX object src/CMakeFiles/eriworker_gentransform.dir/solidharmonics.cpp.o --- src/CMakeFiles/eriworker_gentransform.dir/mathf.cpp.o --- [ 4%] Building CXX object src/CMakeFiles/eriworker_gentransform.dir/mathf.cpp.o --- src/CMakeFiles/eriworker_gentransform.dir/solidharmonics.cpp.o --- cd /construction/science/erkale/.build/src && /usr/local/bin/clang++60 -DARMA_DONT_USE_WRAPPER -I/construction/science/erkale/erkale-4bd3930/src -I/usr/local/include -pipe -O2 -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -pipe -O2 -fno-strict-aliasing -o CMakeFiles/eriworker_gentransform.dir/solidharmonics.cpp.o -c /construction/science/erkale/erkale-4bd3930/src/solidharmonics.cpp --- src/CMakeFiles/eriworker_gentransform.dir/mathf.cpp.o --- cd /construction/science/erkale/.build/src && /usr/local/bin/clang++60 -DARMA_DONT_USE_WRAPPER -I/construction/science/erkale/erkale-4bd3930/src -I/usr/local/include -pipe -O2 -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -pipe -O2 -fno-strict-aliasing -o CMakeFiles/eriworker_gentransform.dir/mathf.cpp.o -c /construction/science/erkale/erkale-4bd3930/src/mathf.cpp --- src/completeness/CMakeFiles/liberkale_cmp.dir/all --- --- src/completeness/liberkale_cmp.so.0.1.0 --- [ 4%] Linking CXX shared library liberkale_cmp.so cd /construction/science/erkale/.build/src/completeness && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/liberkale_cmp.dir/link.txt --verbose=1 /usr/local/bin/clang++60 -fPIC -pipe -O2 -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -pipe -O2 -fno-strict-aliasing /usr/local/lib/libcblas.so /usr/local/lib/liblapack.so /usr/local/lib/libblas.so -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -L/usr/local/lib -shared -Wl,-soname,liberkale_cmp.so.0.1.0 -o liberkale_cmp.so.0.1.0 CMakeFiles/liberkale_cmp.dir/completeness_profile.cpp.o CMakeFiles/liberkale_cmp.dir/optimize_completeness.cpp.o -Wl,-rpath,/usr/local/lib /usr/local/lib/libgsl.so cd /construction/science/erkale/.build/src/completeness && /usr/local/bin/cmake -E cmake_symlink_library liberkale_cmp.so.0.1.0 liberkale_cmp.so.0.1.0 liberkale_cmp.so [ 5%] Built target liberkale_cmp --- src/CMakeFiles/eriworker_gentransform.dir/all --- --- src/eriworker_gentransform --- [ 6%] Linking CXX executable eriworker_gentransform cd /construction/science/erkale/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/eriworker_gentransform.dir/link.txt --verbose=1 /usr/local/bin/clang++60 -pipe -O2 -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -pipe -O2 -fno-strict-aliasing /usr/local/lib/libcblas.so /usr/local/lib/liblapack.so /usr/local/lib/libblas.so -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -L/usr/local/lib CMakeFiles/eriworker_gentransform.dir/eriworker_gentransform.cpp.o CMakeFiles/eriworker_gentransform.dir/solidharmonics.cpp.o CMakeFiles/eriworker_gentransform.dir/mathf.cpp.o -o eriworker_gentransform -Wl,-rpath,/usr/local/lib /usr/local/lib/libgsl.so -llapack [ 6%] Built target eriworker_gentransform --- src/CMakeFiles/liberkale.dir/all --- /usr/bin/make -f src/CMakeFiles/liberkale.dir/build.make src/CMakeFiles/liberkale.dir/depend --- src/scf-solvers.cpp --- --- src/scf-fock.cpp --- --- src/scf-force.cpp --- --- src/eriworker_routines.cpp --- --- src/scf-fock.cpp --- [ 6%] Generating scf-fock.cpp --- src/scf-solvers.cpp --- [ 7%] Generating scf-solvers.cpp cd /construction/science/erkale/.build/src && /bin/cat /construction/science/erkale/erkale-4bd3930/src/scf-includes.cpp.in >/construction/science/erkale/.build/src/scf-solvers.cpp --- src/scf-fock.cpp --- cd /construction/science/erkale/.build/src && /bin/cat /construction/science/erkale/erkale-4bd3930/src/scf-includes.cpp.in >/construction/science/erkale/.build/src/scf-fock.cpp --- src/scf-force.cpp --- [ 8%] Generating scf-force.cpp --- src/scf-solvers.cpp --- cd /construction/science/erkale/.build/src && /usr/local/bin/clang++60 -x c++ -E NOTFOUND -DRESTRICTED -DHF /construction/science/erkale/erkale-4bd3930/src/scf-solvers.cpp.in >>/construction/science/erkale/.build/src/scf-solvers.cpp --- src/scf-fock.cpp --- cd /construction/science/erkale/.build/src && /usr/local/bin/clang++60 -x c++ -E NOTFOUND -DRESTRICTED -DHF /construction/science/erkale/erkale-4bd3930/src/scf-fock.cpp.in >>/construction/science/erkale/.build/src/scf-fock.cpp --- src/scf-force.cpp --- cd /construction/science/erkale/.build/src && /bin/cat /construction/science/erkale/erkale-4bd3930/src/scf-includes.cpp.in >/construction/science/erkale/.build/src/scf-force.cpp cd /construction/science/erkale/.build/src && /usr/local/bin/clang++60 -x c++ -E NOTFOUND -DRESTRICTED -DHF /construction/science/erkale/erkale-4bd3930/src/scf-force.cpp.in >>/construction/science/erkale/.build/src/scf-force.cpp --- src/eriworker_routines.cpp --- [ 9%] Generating eriworker_routines.cpp cd /construction/science/erkale/.build/src && ./eriworker_gentransform > /construction/science/erkale/.build/src/eriworker_routines.cpp cd /construction/science/erkale/.build/src && /bin/cat /construction/science/erkale/erkale-4bd3930/src/eriworker.cpp >> /construction/science/erkale/.build/src/eriworker_routines.cpp --- src/scf-solvers.cpp --- clang-6.0: error: no such file or directory: 'NOTFOUND' *** [src/scf-solvers.cpp] Error code 1 make[3]: stopped in /construction/science/erkale/.build --- src/scf-force.cpp --- clang-6.0: error: no such file or directory: 'NOTFOUND' *** [src/scf-force.cpp] Error code 1 make[3]: stopped in /construction/science/erkale/.build --- src/scf-fock.cpp --- clang-6.0: error: no such file or directory: 'NOTFOUND' *** [src/scf-fock.cpp] Error code 1 make[3]: stopped in /construction/science/erkale/.build 3 errors make[3]: stopped in /construction/science/erkale/.build *** [src/CMakeFiles/liberkale.dir/all] Error code 2 make[2]: stopped in /construction/science/erkale/.build 1 error make[2]: stopped in /construction/science/erkale/.build *** [all] Error code 2 make[1]: stopped in /construction/science/erkale/.build 1 error make[1]: stopped in /construction/science/erkale/.build ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /xports/science/erkale -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 17 MAR 2019 at 17:07:56 UTC Duration: 00:02:00