=> Building science/bodr
Started : Thursday, 7 MAR 2019 at 12:58:02 UTC
Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64
--------------------------------------------------
-- Environment
--------------------------------------------------
UNAME_r=5.5-SYNTH
UNAME_m=x86_64
UNAME_p=x86_64
UNAME_v=DragonFly 5.5-SYNTH
UNAME_s=DragonFly
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin
SSL_NO_VERIFY_PEER=1
TERM=dumb
PKG_CACHEDIR=/var/cache/pkg8
PKG_DBDIR=/var/db/pkg8
PORTSDIR=/xports
LANG=C
HOME=/root
USER=root
--------------------------------------------------
-- Options
--------------------------------------------------
===> The following configuration options are available for bodr-10:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
--------------------------------------------------
-- CONFIGURE_ENV
--------------------------------------------------
PERL="/usr/local/bin/perl"
MAKE=gmake
ac_cv_path_PERL=/usr/local/bin/perl
ac_cv_path_PERL_PATH=/usr/local/bin/perl
PERL_USE_UNSAFE_INC=1
XDG_DATA_HOME=/construction/science/bodr
XDG_CONFIG_HOME=/construction/science/bodr
HOME=/construction/science/bodr
TMPDIR="/tmp"
PATH=/construction/science/bodr/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin
SHELL=/bin/sh
CONFIG_SHELL=/bin/sh
CCVER=gcc80
CONFIG_SITE=/xports/Templates/config.site
lt_cv_sys_max_cmd_len=262144
--------------------------------------------------
-- CONFIGURE_ARGS
--------------------------------------------------
--prefix=/usr/local
${_LATE_CONFIGURE_ARGS}
--------------------------------------------------
-- MAKE_ENV
--------------------------------------------------
PERL_USE_UNSAFE_INC=1
XDG_DATA_HOME=/construction/science/bodr
XDG_CONFIG_HOME=/construction/science/bodr
HOME=/construction/science/bodr
TMPDIR="/tmp"
PATH=/construction/science/bodr/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin
NO_PIE=yes
MK_DEBUG_FILES=no
MK_KERNEL_SYMBOLS=no
SHELL=/bin/sh
NO_LINT=YES
CCVER=gcc80
PREFIX=/usr/local
LOCALBASE=/usr/local
NOPROFILE=1
CC="cc"
CFLAGS="-pipe -O2 -fno-strict-aliasing "
CPP="cpp"
CPPFLAGS=""
LDFLAGS=" "
LIBS=""
CXX="c++"
CXXFLAGS=" -pipe -O2 -fno-strict-aliasing "
MANPREFIX="/usr/local"
BSD_INSTALL_PROGRAM="install -s -m 555"
BSD_INSTALL_LIB="install -s -m 0644"
BSD_INSTALL_SCRIPT="install -m 555"
BSD_INSTALL_DATA="install -m 0644"
BSD_INSTALL_MAN="install -m 444"
--------------------------------------------------
-- MAKE_ARGS
--------------------------------------------------
DESTDIR=/construction/science/bodr/stage
--------------------------------------------------
-- PLIST_SUB
--------------------------------------------------
PORTDOCS=""
OSREL=5.5
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
LIB32DIR=lib
PERL_VERSION=5.28.1
PERL_VER=5.28
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.28
PROFILE="@comment "
DOCSDIR="share/doc/bodr"
EXAMPLESDIR="share/examples/bodr"
DATADIR="share/bodr"
WWWDIR="www/bodr"
ETCDIR="etc/bodr"
--------------------------------------------------
-- SUB_LIST
--------------------------------------------------
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bodr
DOCSDIR=/usr/local/share/doc/bodr
EXAMPLESDIR=/usr/local/share/examples/bodr
WWWDIR=/usr/local/www/bodr
ETCDIR=/usr/local/etc/bodr
--------------------------------------------------
-- /etc/make.conf
--------------------------------------------------
SYNTHPROFILE=Release-BE
USE_PACKAGE_DEPENDS_ONLY=yes
PACKAGE_BUILDING=yes
BATCH=yes
PKG_CREATE_VERBOSE=yes
PORTSDIR=/xports
DISTDIR=/distfiles
WRKDIRPREFIX=/construction
PORT_DBDIR=/options
PACKAGES=/packages
MAKE_JOBS_NUMBER_LIMIT=5
LICENSES_ACCEPTED= NONE
HAVE_COMPAT_IA32_KERN=
CONFIGURE_MAX_CMD_LEN=262144
_PERL5_FROM_BIN=5.26.2
_ALTCCVERSION_921dbbb2=none
_OBJC_ALTCCVERSION_921dbbb2=none
_SMP_CPUS=8
UID=0
ARCH=x86_64
OPSYS=DragonFly
DFLYVERSION=500500
OSVERSION=9999999
OSREL=5.5
_OSRELEASE=5.5-SYNTH
PYTHONBASE=/usr/local
_PKG_CHECKED=1
--------------------------------------------------------------------------------
-- Phase: check-sanity
--------------------------------------------------------------------------------
===> NOTICE:
The bodr port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License CC0-1.0 accepted by the user
--------------------------------------------------------------------------------
-- Phase: pkg-depends
--------------------------------------------------------------------------------
===> bodr-10 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
Installing pkg-1.10.5_5...
Extracting pkg-1.10.5_5: .......... done
===> bodr-10 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of bodr-10
--------------------------------------------------------------------------------
-- Phase: fetch-depends
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Phase: fetch
--------------------------------------------------------------------------------
===> NOTICE:
The bodr port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License CC0-1.0 accepted by the user
===> Fetching all distfiles required by bodr-10 for building
--------------------------------------------------------------------------------
-- Phase: checksum
--------------------------------------------------------------------------------
===> NOTICE:
The bodr port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License CC0-1.0 accepted by the user
===> Fetching all distfiles required by bodr-10 for building
=> SHA256 Checksum OK for bodr-10.tar.bz2.
--------------------------------------------------------------------------------
-- Phase: extract-depends
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Phase: extract
--------------------------------------------------------------------------------
===> NOTICE:
The bodr port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License CC0-1.0 accepted by the user
===> Fetching all distfiles required by bodr-10 for building
===> Extracting for bodr-10
=> SHA256 Checksum OK for bodr-10.tar.bz2.
--------------------------------------------------------------------------------
-- Phase: patch-depends
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Phase: patch
--------------------------------------------------------------------------------
===> Patching for bodr-10
--------------------------------------------------------------------------------
-- Phase: build-depends
--------------------------------------------------------------------------------
===> bodr-10 depends on executable: xsltproc - not found
===> Installing existing package /packages/All/libxslt-1.1.32.txz
Installing libxslt-1.1.32...
`-- Installing libgcrypt-1.8.4_1...
| `-- Installing indexinfo-0.3.1...
| `-- Extracting indexinfo-0.3.1: .... done
| `-- Installing libgpg-error-1.35...
| | `-- Installing gettext-runtime-0.19.8.1_2...
| | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
| `-- Extracting libgpg-error-1.35: .......... done
`-- Extracting libgcrypt-1.8.4_1: .......... done
`-- Installing libxml2-2.9.8...
`-- Extracting libxml2-2.9.8: .......... done
Extracting libxslt-1.1.32: .......... done
===> bodr-10 depends on executable: xsltproc - found
===> Returning to build of bodr-10
===> bodr-10 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_3.txz
Installing gmake-4.2.1_3...
Extracting gmake-4.2.1_3: .......... done
===> bodr-10 depends on executable: gmake - found
===> Returning to build of bodr-10
===> bodr-10 depends on package: perl5>=5.28.r1<5.29 - not found
===> Installing existing package /packages/All/perl5-5.28.1.txz
Installing perl5-5.28.1...
Extracting perl5-5.28.1: .......... done
Message from perl5-5.28.1:
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
#!/usr/local/bin/perl
or
#!/usr/bin/env perl
The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===> bodr-10 depends on package: perl5>=5.28.r1<5.29 - found
===> Returning to build of bodr-10
--------------------------------------------------------------------------------
-- Phase: lib-depends
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Phase: configure
--------------------------------------------------------------------------------
===> Configuring for bodr-10
configure: loading site script /xports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking whether gmake supports nested variables... yes
checking for pkg-config... no
checking for xmllint... /usr/local/bin/xmllint
checking for optional xmllint options to use......
checking for xsltproc... /usr/local/bin/xsltproc
checking for optional xsltproc options to use......
checking for perl... (cached) /usr/local/bin/perl
checking for Perl module diagnostics... found
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating bodr.pc
config.status: creating Makefile
config.status: creating bibtexml-xslt/Makefile
config.status: creating dicts/Makefile
config.status: creating crystal/Makefile
config.status: creating elements/Makefile
config.status: creating isotopes/Makefile
config.status: creating schemas/Makefile
config.status: creating scripts/Makefile
config.status: creating tests/Makefile
--------------------------------------------------------------------------------
-- Phase: build
--------------------------------------------------------------------------------
===> Building for bodr-10
gmake[1]: Entering directory '/construction/science/bodr/bodr-10'
Making all in bibtexml-xslt
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/bibtexml-xslt'
gmake[2]: Nothing to be done for 'all'.
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/bibtexml-xslt'
Making all in dicts
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/dicts'
gmake[2]: Nothing to be done for 'all'.
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/dicts'
Making all in crystal
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/crystal'
echo "" > space-groups_biblio.bxml
cat space-groups.bibxml >> space-groups_biblio.bxml
echo "" >> space-groups_biblio.bxml
/usr/local/bin/xsltproc ../bibtexml-xslt/html-harvard.xsl space-groups_biblio.bxml > space-groups_biblio.html
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/crystal'
Making all in elements
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/elements'
echo "" > elements_biblio.bxml
echo "" > crystalstructures_biblio.bxml
cat boilingpoint.bibxml crystalstructures.bibxml dates.bibxml electron-affinity.bibxml electroneg-pauling.bibxml electronic-configuration.bibxml exact-masses.bibxml ionization.bibxml mass.bibxml meltingpoint.bibxml names.bibxml radii-covalent.bibxml radii-vdw.bibxml symbols.bibxml >> elements_biblio.bxml
cat crystalstructures.bibxml >> crystalstructures_biblio.bxml
echo "" >> crystalstructures_biblio.bxml
echo "" >> elements_biblio.bxml
/usr/local/bin/xsltproc ../bibtexml-xslt/html-harvard.xsl crystalstructures_biblio.bxml > crystalstructures_biblio.html
/usr/local/bin/xsltproc ../bibtexml-xslt/html-harvard.xsl elements_biblio.bxml > elements_biblio.html
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/elements'
Making all in isotopes
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/isotopes'
echo "" > isotopes_biblio.bxml
cat isotopes.bibxml >> isotopes_biblio.bxml
echo "" >> isotopes_biblio.bxml
/usr/local/bin/xsltproc ../bibtexml-xslt/html-harvard.xsl isotopes_biblio.bxml > isotopes_biblio.html
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/isotopes'
Making all in schemas
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/schemas'
gmake[2]: Nothing to be done for 'all'.
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/schemas'
Making all in scripts
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/scripts'
gmake[2]: Nothing to be done for 'all'.
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/scripts'
Making all in tests
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/tests'
gmake[2]: Nothing to be done for 'all'.
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/tests'
gmake[2]: Entering directory '/construction/science/bodr/bodr-10'
gmake[2]: Nothing to be done for 'all-am'.
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10'
gmake[1]: Leaving directory '/construction/science/bodr/bodr-10'
--------------------------------------------------------------------------------
-- Phase: run-depends
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Phase: stage
--------------------------------------------------------------------------------
===> Staging for bodr-10
===> Generating temporary packing list
gmake[1]: Entering directory '/construction/science/bodr/bodr-10'
Making install in bibtexml-xslt
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/bibtexml-xslt'
gmake[3]: Entering directory '/construction/science/bodr/bodr-10/bibtexml-xslt'
gmake[3]: Nothing to be done for 'install-exec-am'.
gmake[3]: Nothing to be done for 'install-data-am'.
gmake[3]: Leaving directory '/construction/science/bodr/bodr-10/bibtexml-xslt'
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/bibtexml-xslt'
Making install in dicts
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/dicts'
gmake[3]: Entering directory '/construction/science/bodr/bodr-10/dicts'
gmake[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/share/bodr/dicts'
install -m 0644 blueobelisk-dictionary.xml '/construction/science/bodr/stage/usr/local/share/bodr/dicts'
gmake[3]: Leaving directory '/construction/science/bodr/bodr-10/dicts'
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/dicts'
Making install in crystal
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/crystal'
gmake[3]: Entering directory '/construction/science/bodr/bodr-10/crystal'
gmake[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/share/doc/bodr/biblio'
install -m 0644 space-groups_biblio.html '/construction/science/bodr/stage/usr/local/share/doc/bodr/biblio'
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/share/bodr'
install -m 0644 space-groups.xml '/construction/science/bodr/stage/usr/local/share/bodr'
gmake[3]: Leaving directory '/construction/science/bodr/bodr-10/crystal'
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/crystal'
Making install in elements
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/elements'
gmake[3]: Entering directory '/construction/science/bodr/bodr-10/elements'
gmake[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/share/bodr'
install -m 0644 crystalstructures.xml '/construction/science/bodr/stage/usr/local/share/bodr'
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/share/doc/bodr/biblio'
install -m 0644 elements_biblio.html crystalstructures_biblio.html '/construction/science/bodr/stage/usr/local/share/doc/bodr/biblio'
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/share/bodr'
install -m 0644 elements.xml '/construction/science/bodr/stage/usr/local/share/bodr'
gmake[3]: Leaving directory '/construction/science/bodr/bodr-10/elements'
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/elements'
Making install in isotopes
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/isotopes'
gmake[3]: Entering directory '/construction/science/bodr/bodr-10/isotopes'
gmake[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/share/doc/bodr/biblio'
install -m 0644 isotopes_biblio.html '/construction/science/bodr/stage/usr/local/share/doc/bodr/biblio'
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/share/bodr'
install -m 0644 isotopes.xml '/construction/science/bodr/stage/usr/local/share/bodr'
gmake[3]: Leaving directory '/construction/science/bodr/bodr-10/isotopes'
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/isotopes'
Making install in schemas
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/schemas'
gmake[3]: Entering directory '/construction/science/bodr/bodr-10/schemas'
gmake[3]: Nothing to be done for 'install-exec-am'.
gmake[3]: Nothing to be done for 'install-data-am'.
gmake[3]: Leaving directory '/construction/science/bodr/bodr-10/schemas'
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/schemas'
Making install in scripts
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/scripts'
gmake[3]: Entering directory '/construction/science/bodr/bodr-10/scripts'
gmake[3]: Nothing to be done for 'install-exec-am'.
gmake[3]: Nothing to be done for 'install-data-am'.
gmake[3]: Leaving directory '/construction/science/bodr/bodr-10/scripts'
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/scripts'
Making install in tests
gmake[2]: Entering directory '/construction/science/bodr/bodr-10/tests'
gmake[3]: Entering directory '/construction/science/bodr/bodr-10/tests'
gmake[3]: Nothing to be done for 'install-exec-am'.
gmake[3]: Nothing to be done for 'install-data-am'.
gmake[3]: Leaving directory '/construction/science/bodr/bodr-10/tests'
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10/tests'
gmake[2]: Entering directory '/construction/science/bodr/bodr-10'
gmake[3]: Entering directory '/construction/science/bodr/bodr-10'
gmake[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/share/doc/bodr'
install -m 0644 AUTHORS THANKS ChangeLog COPYING README '/construction/science/bodr/stage/usr/local/share/doc/bodr'
/bin/mkdir -p '/construction/science/bodr/stage/usr/local/libdata/pkgconfig'
install -m 0644 bodr.pc '/construction/science/bodr/stage/usr/local/libdata/pkgconfig'
gmake[3]: Leaving directory '/construction/science/bodr/bodr-10'
gmake[2]: Leaving directory '/construction/science/bodr/bodr-10'
gmake[1]: Leaving directory '/construction/science/bodr/bodr-10'
====> Compressing man pages (compress-man)
--------------------------------------------------------------------------------
-- Phase: package
--------------------------------------------------------------------------------
===> Building package for bodr-10
file sizes/checksums [18]: . done
packing files [18]: . done
packing directories [0]: . done
--------------------------------------------------
-- Termination
--------------------------------------------------
Finished: Thursday, 7 MAR 2019 at 12:58:14 UTC
Duration: 00:00:12