=> Building net/py-mpi4py@py36 Started : Thursday, 7 MAR 2019 at 12:31:23 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for py36-mpi4py-3.0.0_1: DOCS=on: Build and/or install documentation MANPAGES=off: Build and/or install manual pages ====> MPI Implementation: you have to select exactly one of them MPICH2=off: Parallel processing support via MPICH 2 OPENMPI=on: Parallel processing support via Open MPI OPENMPI2=off: Parallel processing support via Open MPI 2.x ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/net/py-mpi4py XDG_CONFIG_HOME=/construction/net/py-mpi4py HOME=/construction/net/py-mpi4py TMPDIR="/tmp" PATH=/construction/net/py-mpi4py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/net/py-mpi4py XDG_CONFIG_HOME=/construction/net/py-mpi4py HOME=/construction/net/py-mpi4py TMPDIR="/tmp" PATH=/construction/net/py-mpi4py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/net/py-mpi4py/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py36-mpi4py" EXAMPLESDIR="share/examples/py36-mpi4py" DATADIR="share/py36-mpi4py" WWWDIR="www/py36-mpi4py" ETCDIR="etc/py36-mpi4py" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py36-mpi4py DOCSDIR=/usr/local/share/doc/py36-mpi4py EXAMPLESDIR=/usr/local/share/examples/py36-mpi4py WWWDIR=/usr/local/www/py36-mpi4py ETCDIR=/usr/local/etc/py36-mpi4py -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.2 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-mpi4py-3.0.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> py36-mpi4py-3.0.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-mpi4py-3.0.0_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py36-mpi4py-3.0.0_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py36-mpi4py-3.0.0_1 for building => SHA256 Checksum OK for mpi4py-3.0.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py36-mpi4py-3.0.0_1 for building ===> Extracting for py36-mpi4py-3.0.0_1 => SHA256 Checksum OK for mpi4py-3.0.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-mpi4py-3.0.0_1 ===> Applying ports patches for py36-mpi4py-3.0.0_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-mpi4py-3.0.0_1 depends on executable: cython-3.6 - not found ===> Installing existing package /packages/All/py36-cython-0.29.txz Installing py36-cython-0.29... `-- Installing py36-setuptools-40.8.0... | `-- Installing python36-3.6.8... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing gettext-runtime-0.19.8.1_2... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libressl-2.8.3... | | `-- Extracting libressl-2.8.3: .......... done | | `-- Installing ncurses-6.1.20190112... | | `-- Extracting ncurses-6.1.20190112: .......... done | | `-- Installing readline-7.0.5... | | `-- Extracting readline-7.0.5: .......... done | `-- Extracting python36-3.6.8: .......... done `-- Extracting py36-setuptools-40.8.0: .......... done Extracting py36-cython-0.29: .......... done Message from python36-3.6.8: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-40.8.0: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* ===> py36-mpi4py-3.0.0_1 depends on executable: cython-3.6 - found ===> Returning to build of py36-mpi4py-3.0.0_1 ===> py36-mpi4py-3.0.0_1 depends on package: py36-setuptools>0 - found ===> py36-mpi4py-3.0.0_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py36-mpi4py-3.0.0_1 depends on shared library: libmpi.so - not found ===> Installing existing package /packages/All/openmpi-1.10.7_4.txz Installing openmpi-1.10.7_4... `-- Installing gcc5-5.5.0_6... | `-- Installing binutils-2.32,1... | `-- Extracting binutils-2.32,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ......... done `-- Extracting gcc5-5.5.0_6: .......... done `-- Installing hwloc-1.11.11... | `-- Installing libpciaccess-0.13.5... | | `-- Installing pciids-20190213... | | `-- Extracting pciids-20190213: ..... done | `-- Extracting libpciaccess-0.13.5: ......... done | `-- Installing libxml2-2.9.8... | `-- Extracting libxml2-2.9.8: .......... done `-- Extracting hwloc-1.11.11: .......... done `-- Installing libevent-2.1.8_2... `-- Extracting libevent-2.1.8_2: .......... done `-- Installing libltdl-2.4.6... `-- Extracting libltdl-2.4.6: .......... done Extracting openmpi-1.10.7_4: .......... done Message from gcc5-5.5.0_6: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 7 or newer instead.. ===> py36-mpi4py-3.0.0_1 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so) ===> Returning to build of py36-mpi4py-3.0.0_1 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-mpi4py-3.0.0_1 running config MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi/bin/mpicxx /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest /usr/local/mpi/openmpi/bin/mpicxx -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.cxx -o _configtest.o /usr/local/mpi/openmpi/bin/mpicxx -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o _configtest success! removing: _configtest.cxx _configtest.o _configtest -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-mpi4py-3.0.0_1 running build running build_src running build_py creating build creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6 creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py copying src/mpi4py/run.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py copying src/mpi4py/bench.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py copying src/mpi4py/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py copying src/mpi4py/__main__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/server.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/aplus.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/pool.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/_base.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/_lib.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/__main__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures copying src/mpi4py/MPI.pxd -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py copying src/mpi4py/__init__.pxd -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py copying src/mpi4py/libmpi.pxd -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi/bin/mpicxx checking for library 'lmpe' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -llmpe -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -llmpe collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'mpe' dylib library creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/lib-pmpi /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c src/lib-pmpi/mpe.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/lib-pmpi/mpe.o creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/lib-pmpi /usr/local/mpi/openmpi/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/lib-pmpi/mpe.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/lib-pmpi/libmpe.so checking for library 'vt-mpi' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -lvt-mpi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -lvt.mpi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt.mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt' dylib library /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c src/lib-pmpi/vt.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/lib-pmpi/vt.o /usr/local/mpi/openmpi/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/lib-pmpi/vt.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/lib-pmpi/libvt.so checking for library 'vt-mpi' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -lvt-mpi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -lvt.mpi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt.mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/lib-pmpi/vt-mpi.o /usr/local/mpi/openmpi/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/lib-pmpi/vt-mpi.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/lib-pmpi/libvt-mpi.so checking for library 'vt-hyb' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -lvt-hyb -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt-hyb collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.ompi' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -lvt.ompi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt.ompi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/lib-pmpi/vt-hyb.o /usr/local/mpi/openmpi/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/lib-pmpi/vt-hyb.o -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/lib-pmpi/libvt-hyb.so running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi/bin/mpicxx checking for dlopen() availability ... checking for header 'dlfcn.h' ... cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for function 'dlopen' ... cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o cc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.dl' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/usr/local/include/python3.6m -c src/dynload.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/dynload.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/dynload.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/dl.so checking for MPI compile and link ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for missing MPI functions/symbols ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o checking for function 'MPI_Type_create_f90_integer' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Type_create_f90_real' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Type_create_f90_complex' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Status_c2f' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Status_f2c' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for dlopen() availability ... checking for header 'dlfcn.h' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for function 'dlopen' ... /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.6m -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.MPI' extension /usr/local/mpi/openmpi/bin/mpicc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/usr/local/include/python3.6m -c src/MPI.c -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/MPI.o /usr/local/mpi/openmpi/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/src/MPI.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.5-SYNTH-x86_64-3.6 -L/usr/local/mpi/openmpi/lib -R/usr/local/mpi/openmpi/lib -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/MPI.so writing build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/mpi.cfg -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-mpi4py-3.0.0_1 depends on package: py36-setuptools>0 - found ===> py36-mpi4py-3.0.0_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-mpi4py-3.0.0_1 ===> Generating temporary packing list running install running build running build_src running build_py running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi/bin/mpicxx running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi/bin/mpicxx running install_lib creating /construction/net/py-mpi4py/stage/usr/local/lib/python3.6 creating /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages creating /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py creating /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/lib-pmpi copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/lib-pmpi/libmpe.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/lib-pmpi copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/lib-pmpi/libvt.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/lib-pmpi copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/lib-pmpi/libvt-hyb.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/lib-pmpi copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/lib-pmpi/libvt-mpi.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/lib-pmpi copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/dl.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/__init__.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/run.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/__main__.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/__init__.pxd -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/libmpi.pxd -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py creating /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures/__main__.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures/__init__.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures/aplus.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures/pool.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures/server.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures/_base.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/futures/_lib.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/bench.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/MPI.pxd -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py creating /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/include creating /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py/mpi4py.h -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py/mpi.pxi -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py/mpi4py.i -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py/mpi4py.MPI.h -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/mpi.cfg -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/mpi4py/MPI.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/run.py to run.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/__main__.py to __main__.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures/__main__.py to __main__.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures/aplus.py to aplus.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures/pool.py to pool.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures/server.py to server.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures/_base.py to _base.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/futures/_lib.py to _lib.cpython-36.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py/bench.py to bench.cpython-36.pyc writing byte-compilation script '/tmp/tmp7tpnv4f6.py' /usr/local/bin/python3.6 /tmp/tmp7tpnv4f6.py removing /tmp/tmp7tpnv4f6.py running install_egg_info running egg_info writing mpi4py.egg-info/PKG-INFO writing dependency_links to mpi4py.egg-info/dependency_links.txt writing top-level names to mpi4py.egg-info/top_level.txt reading manifest file 'mpi4py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'mpi4py.egg-info/SOURCES.txt' Copying mpi4py.egg-info to /construction/net/py-mpi4py/stage/usr/local/lib/python3.6/site-packages/mpi4py-3.0.0-py3.6.egg-info running install_scripts writing list of installed files to '/construction/net/py-mpi4py/.PLIST.pymodtmp' install -m 0644 /construction/net/py-mpi4py/mpi4py-3.0.0/README.rst /construction/net/py-mpi4py/stage/usr/local/share/doc/py36-mpi4py cd /construction/net/py-mpi4py/mpi4py-3.0.0/docs && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/net/py-mpi4py/stage/usr/local/share/doc/py36-mpi4py ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-mpi4py-3.0.0_1 file sizes/checksums [166]: .. done packing files [166]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 7 MAR 2019 at 12:33:40 UTC Duration: 00:02:16