=> Building math/py-pyodeint@py36 Started : Wednesday, 6 MAR 2019 at 03:40:29 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/math/py-pyodeint XDG_CONFIG_HOME=/construction/math/py-pyodeint HOME=/construction/math/py-pyodeint TMPDIR="/tmp" PATH=/construction/math/py-pyodeint/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/math/py-pyodeint XDG_CONFIG_HOME=/construction/math/py-pyodeint HOME=/construction/math/py-pyodeint TMPDIR="/tmp" PATH=/construction/math/py-pyodeint/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-pyodeint/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pyodeint" EXAMPLESDIR="share/examples/pyodeint" DATADIR="share/pyodeint" WWWDIR="www/pyodeint" ETCDIR="etc/pyodeint" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pyodeint DOCSDIR=/usr/local/share/doc/pyodeint EXAMPLESDIR=/usr/local/share/examples/pyodeint WWWDIR=/usr/local/www/pyodeint ETCDIR=/usr/local/etc/pyodeint -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.2 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-pyodeint-0.10.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> py36-pyodeint-0.10.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-pyodeint-0.10.1_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py36-pyodeint-0.10.1_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py36-pyodeint-0.10.1_2 for building => SHA256 Checksum OK for pyodeint-0.10.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py36-pyodeint-0.10.1_2 for building ===> Extracting for py36-pyodeint-0.10.1_2 => SHA256 Checksum OK for pyodeint-0.10.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-pyodeint-0.10.1_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-pyodeint-0.10.1_2 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.1,1.txz Installing py36-numpy-1.16.1,1... `-- Installing gcc5-5.5.0_6... | `-- Installing binutils-2.32,1... | | `-- Installing gettext-runtime-0.19.8.1_2... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done | `-- Extracting binutils-2.32,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ......... done `-- Extracting gcc5-5.5.0_6: .......... done `-- Installing openblas-0.2.20_7,1... `-- Extracting openblas-0.2.20_7,1: ......... done `-- Installing py36-setuptools-40.8.0... | `-- Installing python36-3.6.8... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libressl-2.8.3... | | `-- Extracting libressl-2.8.3: .......... done | | `-- Installing ncurses-6.1.20190112... | | `-- Extracting ncurses-6.1.20190112: .......... done | | `-- Installing readline-7.0.5... | | `-- Extracting readline-7.0.5: .......... done | `-- Extracting python36-3.6.8: .......... done `-- Extracting py36-setuptools-40.8.0: .......... done `-- Installing suitesparse-5.2.0_2... | `-- Installing lapack-3.5.0_6... | | `-- Installing blas-3.5.0_5... | | `-- Extracting blas-3.5.0_5: ....... done | `-- Extracting lapack-3.5.0_6: .......... done | `-- Installing metis-5.1.0_7... | `-- Extracting metis-5.1.0_7: .......... done `-- Extracting suitesparse-5.2.0_2: .......... done Extracting py36-numpy-1.16.1,1: .......... done Message from gcc5-5.5.0_6: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 7 or newer instead.. Message from python36-3.6.8: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-40.8.0: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-pyodeint-0.10.1_2 depends on package: py36-numpy>0 - found ===> Returning to build of py36-pyodeint-0.10.1_2 ===> py36-pyodeint-0.10.1_2 depends on file: /usr/local/include/boost/config.hpp - not found ===> Installing existing package /packages/All/boost-libs-1.69.0_1.txz Installing boost-libs-1.69.0_1... `-- Installing icu-63.1_1,1... `-- Extracting icu-63.1_1,1: .......... done Extracting boost-libs-1.69.0_1: .......... done Message from boost-libs-1.69.0_1: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> py36-pyodeint-0.10.1_2 depends on file: /usr/local/include/boost/config.hpp - found ===> Returning to build of py36-pyodeint-0.10.1_2 ===> py36-pyodeint-0.10.1_2 depends on package: py36-setuptools>0 - found ===> py36-pyodeint-0.10.1_2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-pyodeint-0.10.1_2 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-pyodeint-0.10.1_2 running build running build_py creating build creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6 creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint copying pyodeint/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint copying pyodeint/_release.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint copying pyodeint/_util.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/tests copying pyodeint/tests/__init__.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/tests copying pyodeint/tests/test_odeint_numpy.py -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/tests running egg_info writing pyodeint.egg-info/PKG-INFO writing dependency_links to pyodeint.egg-info/dependency_links.txt writing requirements to pyodeint.egg-info/requires.txt writing top-level names to pyodeint.egg-info/top_level.txt reading manifest file 'pyodeint.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyodeint.egg-info/SOURCES.txt' copying pyodeint/_odeint.cpp -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode.hpp -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode.pxd -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode_nogil.pxd -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode_parallel.hpp -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode_parallel.pxd -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/boost creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric/odeint creating build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric/odeint/stepper copying pyodeint/include/boost/numeric/odeint/stepper/rosenbrock4_controller.hpp -> build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric/odeint/stepper running build_ext building 'pyodeint._odeint' extension creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DANYODE_NO_LAPACK=1 -Ipyodeint/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -Iexternal/anyode/include -I/usr/local/include/python3.6m -c pyodeint/_odeint.cpp -o build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/_odeint.o -std=c++11 In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pyodeint/_odeint.cpp:603: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ c++ -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/_odeint.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/_odeint.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-pyodeint-0.10.1_2 depends on package: py36-numpy>0 - found ===> py36-pyodeint-0.10.1_2 depends on package: py36-setuptools>0 - found ===> py36-pyodeint-0.10.1_2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-pyodeint-0.10.1_2 ===> Generating temporary packing list running install running build running build_py running egg_info writing pyodeint.egg-info/PKG-INFO writing dependency_links to pyodeint.egg-info/dependency_links.txt writing requirements to pyodeint.egg-info/requires.txt writing top-level names to pyodeint.egg-info/top_level.txt reading manifest file 'pyodeint.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyodeint.egg-info/SOURCES.txt' running build_ext running install_lib creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6 creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/_odeint.so -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/_release.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/__init__.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/tests/__init__.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/tests/test_odeint_numpy.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/_util.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/_odeint.cpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode_nogil.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode_parallel.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost/numeric creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost/numeric/odeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost/numeric/odeint/stepper copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric/odeint/stepper/rosenbrock4_controller.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost/numeric/odeint/stepper copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode_parallel.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include copying build/lib.dragonfly-5.5-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/_release.py to _release.cpython-36.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests/test_odeint_numpy.py to test_odeint_numpy.cpython-36.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/_util.py to _util.cpython-36.pyc writing byte-compilation script '/tmp/tmpn7jo1jkg.py' /usr/local/bin/python3.6 /tmp/tmpn7jo1jkg.py removing /tmp/tmpn7jo1jkg.py running install_egg_info Copying pyodeint.egg-info to /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint-0.10.1-py3.6.egg-info running install_scripts writing list of installed files to '/construction/math/py-pyodeint/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-pyodeint-0.10.1_2 file sizes/checksums [31]: . done packing files [31]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 6 MAR 2019 at 03:41:45 UTC Duration: 00:01:15