=> Building math/moab Started : Monday, 10 DEC 2018 at 18:05:55 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.25.g9bb66-DEVELOPMENT #33: Mon Dec 3 06:33:52 PST 2018 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for moab-4.6.3: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/math/moab XDG_CONFIG_HOME=/construction/math/moab HOME=/construction/math/moab TMPDIR="/tmp" PATH=/construction/math/moab/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- --disable-static --with-netcdf=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/math/moab XDG_CONFIG_HOME=/construction/math/moab HOME=/construction/math/moab TMPDIR="/tmp" PATH=/construction/math/moab/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/moab/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/moab" EXAMPLESDIR="share/examples/moab" DATADIR="share/moab" WWWDIR="www/moab" ETCDIR="etc/moab" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/moab DOCSDIR=/usr/local/share/doc/moab EXAMPLESDIR=/usr/local/share/examples/moab WWWDIR=/usr/local/www/moab ETCDIR=/usr/local/etc/moab -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.2 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> moab-4.6.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> moab-4.6.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of moab-4.6.3 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by moab-4.6.3 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by moab-4.6.3 for building => SHA256 Checksum OK for moab-4.6.3.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by moab-4.6.3 for building ===> Extracting for moab-4.6.3 => SHA256 Checksum OK for moab-4.6.3.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for moab-4.6.3 ===> Applying ports patches for moab-4.6.3 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> moab-4.6.3 depends on package: autoconf>=2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_2.txz Installing autoconf-2.69_2... `-- Installing autoconf-wrapper-20131203... `-- Extracting autoconf-wrapper-20131203: .......... done `-- Installing indexinfo-0.3.1... `-- Extracting indexinfo-0.3.1: .... done `-- Installing m4-1.4.18_1,1... `-- Extracting m4-1.4.18_1,1: .......... done `-- Installing perl5-5.26.2_2... `-- Extracting perl5-5.26.2_2: .......... done Extracting autoconf-2.69_2: .......... done Message from perl5-5.26.2_2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> moab-4.6.3 depends on package: autoconf>=2.69 - found ===> Returning to build of moab-4.6.3 ===> moab-4.6.3 depends on package: automake>=1.16.1 - not found ===> Installing existing package /packages/All/automake-1.16.1_1.txz Installing automake-1.16.1_1... Extracting automake-1.16.1_1: .......... done ===> moab-4.6.3 depends on package: automake>=1.16.1 - found ===> Returning to build of moab-4.6.3 ===> moab-4.6.3 depends on executable: libtoolize - not found ===> Installing existing package /packages/All/libtool-2.4.6_1.txz Installing libtool-2.4.6_1... Extracting libtool-2.4.6_1: .......... done ===> moab-4.6.3 depends on executable: libtoolize - found ===> Returning to build of moab-4.6.3 ===> moab-4.6.3 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... `-- Installing gettext-runtime-0.19.8.1_2... `-- Extracting gettext-runtime-0.19.8.1_2: .......... done Extracting gmake-4.2.1_3: .......... done ===> moab-4.6.3 depends on executable: gmake - found ===> Returning to build of moab-4.6.3 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> moab-4.6.3 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.1_2.txz Installing hdf5-1.10.1_2... `-- Installing hdf-szip-2.1_2... `-- Extracting hdf-szip-2.1_2: .......... done Extracting hdf5-1.10.1_2: .......... done ===> moab-4.6.3 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of moab-4.6.3 ===> moab-4.6.3 depends on shared library: libnetcdf.so - not found ===> Installing existing package /packages/All/netcdf-4.6.1_1.txz Installing netcdf-4.6.1_1... `-- Installing curl-7.62.0... | `-- Installing ca_root_nss-3.40... | `-- Extracting ca_root_nss-3.40: ........ done | `-- Installing krb5-1.16.2... | | `-- Installing libressl-2.8.2... | | `-- Extracting libressl-2.8.2: .......... done | | `-- Installing pkgconf-1.5.4,1... | | `-- Extracting pkgconf-1.5.4,1: .......... done | | `-- Installing readline-7.0.3_2... | | `-- Installing ncurses-6.1.20180728... | | `-- Extracting ncurses-6.1.20180728: .......... done | | `-- Extracting readline-7.0.3_2: .......... done | `-- Extracting krb5-1.16.2: .......... done | `-- Installing libnghttp2-1.34.0... | `-- Extracting libnghttp2-1.34.0: .......... done `-- Extracting curl-7.62.0: .......... done Extracting netcdf-4.6.1_1: .......... done Message from ca_root_nss-3.40: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> moab-4.6.3 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Returning to build of moab-4.6.3 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for moab-4.6.3 libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' configure.ac:27: installing 'config/compile' configure.ac:10: installing 'config/missing' MeshFiles/unittest/io/Makefile.am:8: warning: whitespace following trailing backslash itaps/igeom/Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' src/Makefile.am:32: warning: source file 'lotte/poly.c' is in a subdirectory, src/Makefile.am:32: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am:32: warning: source file 'lotte/findpt.c' is in a subdirectory, src/Makefile.am:32: but option 'subdir-objects' is disabled src/Makefile.am:32: warning: source file 'lotte/errmem.c' is in a subdirectory, src/Makefile.am:32: but option 'subdir-objects' is disabled src/Makefile.am:32: warning: source file 'lotte/tensor.c' is in a subdirectory, src/Makefile.am:32: but option 'subdir-objects' is disabled src/Makefile.am:214: warning: source file '$(srcdir)/../tools/mbzoltan/MBZoltan.cpp' is in a subdirectory, src/Makefile.am:214: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/adjacency.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/connectivity.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/file-desc.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/file-handle.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/file.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/nodes.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/sets.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/status.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/tags.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:5: warning: source file 'src/util.c' is in a subdirectory, src/io/mhdf/Makefile.am:5: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:29: warning: source file 'example/info.c' is in a subdirectory, src/io/mhdf/Makefile.am:29: but option 'subdir-objects' is disabled src/io/mhdf/Makefile.am:32: warning: source file 'example/validate.c' is in a subdirectory, src/io/mhdf/Makefile.am:32: but option 'subdir-objects' is disabled test/Makefile.am:120: warning: source file '$(top_srcdir)/src/FileOptions.cpp' is in a subdirectory, test/Makefile.am:120: but option 'subdir-objects' is disabled test/Makefile.am:95: warning: source file '$(top_srcdir)/src/HomXform.cpp' is in a subdirectory, test/Makefile.am:95: but option 'subdir-objects' is disabled test/Makefile.am:132: warning: source file '$(top_srcdir)/src/CN.cpp' is in a subdirectory, test/Makefile.am:132: but option 'subdir-objects' is disabled test/Makefile.am:109: warning: source file '$(top_srcdir)/src/AffineXform.cpp' is in a subdirectory, test/Makefile.am:109: but option 'subdir-objects' is disabled test/io/Makefile.am:57: warning: source file '$(top_srcdir)/src/io/Tqdcfr.cpp' is in a subdirectory, test/io/Makefile.am:57: but option 'subdir-objects' is disabled test/parallel/Makefile.am:92: warning: source file '../io/read_nc.cpp' is in a subdirectory, test/parallel/Makefile.am:92: but option 'subdir-objects' is disabled test/parallel/Makefile.am:96: warning: source file '../io/write_nc.cpp' is in a subdirectory, test/parallel/Makefile.am:96: but option 'subdir-objects' is disabled configure: loading site script /xports/Templates/config.site checking build system type... x86_64-portbld-dragonfly5.5 checking host system type... x86_64-portbld-dragonfly5.5 checking target system type... x86_64-portbld-dragonfly5.5 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking for sed... (cached) /usr/bin/sed checking whether gmake supports the include directive... yes (GNU style) checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking how to run the C preprocessor... cpp checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgfortran... no checking for pgf95... no checking for lf95... no checking for ftn... no checking for nagfor... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking whether we are using the GNU Fortran compiler... no checking whether accepts -g... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgfortran... no checking for pgf95... no checking for lf95... no checking for ftn... no checking for nagfor... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking whether ln -s works... yes checking whether gmake sets $(MAKE)... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... (cached) 262144 checking how to convert x86_64-portbld-dragonfly5.5 file names to x86_64-portbld-dragonfly5.5 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly5.5 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly5.5 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly5.5 ld.so checking how to hardcode library paths into programs... immediate checking for known C compilers... GNU checking for known compiler/OS combinations... GNU:x86_64 checking for known c++ compilers... GNU checking for known compiler/OS combinations... GNU:x86_64 checking whether gmake supports nested variables... (cached) yes checking whether byte ordering is bigendian... no checking if platform is IBM BlueGene... no checking for gunzip... gunzip -c checking for gzip... (cached) gunzip -c checking for zcat... (cached) gunzip -c checking if C++ compiler supports template class specialization... yes checking if C++ compiler supports template function specialization... yes checking if c++ works... yes checking for vsnprintf... (cached) yes checking if std::vector has templatized insert method... yes checking if std::copy must be old SGI format... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking for stddef.h... (cached) yes checking for stdlib.h... (cached) yes checking size of void *... 8 checking for size_t... (cached) yes checking for ptrdiff_t... (cached) yes checking size of EntityHandle... 8 checking if iMesh support is to be built... yes checking if iGeom support is to be built... no configure: creating ./config.lt config.lt: creating libtool checking ieeefp.h usability... yes checking ieeefp.h presence... yes checking for ieeefp.h... yes checking for C++ unordered_map... std checking for deflate in -lz... (cached) yes checking for SZ_Decompress in -lsz... yes checking if HDF5 support is enabled... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Fopen in -lhdf5... yes checking if CCMIO support is enabled... yes checking if CCMIO support available... checking ccmio.h usability... no checking ccmio.h presence... no checking for ccmio.h... no checking ccmioutility.h usability... no checking ccmioutility.h presence... no checking for ccmioutility.h... no checking ccmiocore.h usability... no checking ccmiocore.h presence... no checking for ccmiocore.h... no checking unsuccessful, Ccmio support disabled... checking if DAMSEL support is enabled... no checking if DAMSEL support available... checking if NetCDF support is enabled... yes checking for nc-config... /usr/local/bin/nc-config checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking if NC_MAX_DIMS is at least 65536... no checking if NC_MAX_VARS is at least 524288... no checking for nc_create in -lnetcdf... yes checking if Pnetcdf support is enabled... no checking if CGNS support is enabled... yes checking cgnslib.h usability... no checking cgnslib.h presence... no checking for cgnslib.h... no configure: WARNING: CGNS header not found. checking for cg_open in -lcgns... no checking for cg_open in -lcgns... no checking for cg_open in -lcgns... no configure: WARNING: "CGNS support disabled" checking for doxygen... no checking if mbconvert is to be built... yes checking if hexmodops is to be built... yes checking if qvdual is to be built... no checking if vtkMOABReader is to be built... no checking if vtkMOABReaderNew is to be built... no checking if mbsize is to be built... yes checking if mbskin is to be built... yes checking if mbtagprop is to be built... yes checking if mbmem is to be built... yes checking if mcnpmit is to be built... no checking if mbcoupler is to be built... no checking if spheredecomp is to be built... yes checking if mbsurfplot is to be built... yes checking if mbzoltan is to be built... no checking if dagmc is to be built... yes checking if gsets is to be built... yes checking if mbdepth is to be built... yes checking if refiner is to be built... no checking if h5mtools is to be built... yes checking if mbcslam is to be built... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating moab.make config.status: creating MOABConfig.cmake config.status: creating src/Makefile config.status: creating src/io/Makefile config.status: creating src/io/mhdf/Makefile config.status: creating src/LocalDiscretization/Makefile config.status: creating src/parallel/Makefile config.status: creating src/oldinc/Makefile config.status: creating test/Makefile config.status: creating test/dagmc/Makefile config.status: creating test/h5file/Makefile config.status: creating test/dual/Makefile config.status: creating test/obb/Makefile config.status: creating test/perf/Makefile config.status: creating test/perf/point_location/Makefile config.status: creating test/io/Makefile config.status: creating test/parallel/Makefile config.status: creating test/oldinc/Makefile config.status: creating itaps/iBase_f.h config.status: creating itaps/Makefile config.status: creating itaps/imesh/Makefile config.status: creating itaps/imesh/iMesh-Defs.inc config.status: creating itaps/igeom/Makefile config.status: creating itaps/igeom/FBiGeom-Defs.inc config.status: creating tools/Makefile config.status: creating tools/refiner/Makefile config.status: creating tools/mbcoupler/Makefile config.status: creating tools/mbcslam/Makefile config.status: creating tools/mbzoltan/Config.moab config.status: creating tools/mbzoltan/Makefile config.status: creating tools/mcnpmit/Makefile config.status: creating tools/qvdual/Makefile config.status: creating tools/dagmc/Makefile config.status: creating tools/vtkMOABReader/CMakeLists.txt config.status: creating tools/vtkMOABReaderNew/CMakeLists.txt config.status: creating doc/Makefile config.status: creating doc/user.dox config.status: creating doc/config.tex config.status: creating MeshFiles/Makefile config.status: creating MeshFiles/unittest/Makefile config.status: creating MeshFiles/unittest/io/Makefile config.status: creating MeshFiles/unittest/iGeom/Makefile config.status: creating MeshFiles/unittest/dagmc/Makefile config.status: creating config.h config.status: creating src/moab/Version.h config.status: src/moab/Version.h is unchanged config.status: creating src/moab/EntityHandle.hpp config.status: src/moab/EntityHandle.hpp is unchanged config.status: creating src/parallel/moab_mpi_config.h config.status: src/parallel/moab_mpi_config.h is unchanged config.status: creating src/FCDefs.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/MOAB_FCDefs.h commands C: cc -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set C++: c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for moab-4.6.3 gmake[1]: Entering directory '/construction/math/moab/moab-4.6.3' gmake all-recursive gmake[2]: Entering directory '/construction/math/moab/moab-4.6.3' Making all in src gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/src' gmake all-recursive gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/src' Making all in io gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/src/io' Making all in mhdf gmake[6]: Entering directory '/construction/math/moab/moab-4.6.3/src/io/mhdf' cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT info.o -MD -MP -MF .deps/info.Tpo -c -o info.o `test -f 'example/info.c' || echo './'`example/info.c /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT adjacency.lo -MD -MP -MF .deps/adjacency.Tpo -c -o adjacency.lo `test -f 'src/adjacency.c' || echo './'`src/adjacency.c /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT connectivity.lo -MD -MP -MF .deps/connectivity.Tpo -c -o connectivity.lo `test -f 'src/connectivity.c' || echo './'`src/connectivity.c /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT file-desc.lo -MD -MP -MF .deps/file-desc.Tpo -c -o file-desc.lo `test -f 'src/file-desc.c' || echo './'`src/file-desc.c /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT file-handle.lo -MD -MP -MF .deps/file-handle.Tpo -c -o file-handle.lo `test -f 'src/file-handle.c' || echo './'`src/file-handle.c libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT adjacency.lo -MD -MP -MF .deps/adjacency.Tpo -c src/adjacency.c -fPIC -DPIC -o .libs/adjacency.o mv -f .deps/info.Tpo .deps/info.Po /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo `test -f 'src/file.c' || echo './'`src/file.c libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT file.lo -MD -MP -MF .deps/file.Tpo -c src/file.c -fPIC -DPIC -o .libs/file.o libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT connectivity.lo -MD -MP -MF .deps/connectivity.Tpo -c src/connectivity.c -fPIC -DPIC -o .libs/connectivity.o libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT file-desc.lo -MD -MP -MF .deps/file-desc.Tpo -c src/file-desc.c -fPIC -DPIC -o .libs/file-desc.o libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT file-handle.lo -MD -MP -MF .deps/file-handle.Tpo -c src/file-handle.c -fPIC -DPIC -o .libs/file-handle.o mv -f .deps/file-handle.Tpo .deps/file-handle.Plo mv -f .deps/adjacency.Tpo .deps/adjacency.Plo /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT nodes.lo -MD -MP -MF .deps/nodes.Tpo -c -o nodes.lo `test -f 'src/nodes.c' || echo './'`src/nodes.c /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT sets.lo -MD -MP -MF .deps/sets.Tpo -c -o sets.lo `test -f 'src/sets.c' || echo './'`src/sets.c src/file-desc.c: In function 'get_tag_desc': src/file-desc.c:269:9: warning: this statement may fall through [-Wimplicit-fallthrough=] ++valsize; ^~~~~~~~~ src/file-desc.c:270:7: note: here case 4: ^~~~ src/file-desc.c:274:9: warning: this statement may fall through [-Wimplicit-fallthrough=] ++valsize; ^~~~~~~~~ src/file-desc.c:275:7: note: here case 6: ^~~~ src/file-desc.c:276:9: warning: this statement may fall through [-Wimplicit-fallthrough=] ++valsize; ^~~~~~~~~ src/file-desc.c:277:7: note: here case 7: ^~~~ src/file-desc.c:278:9: warning: this statement may fall through [-Wimplicit-fallthrough=] ++valsize; ^~~~~~~~~ src/file-desc.c:279:7: note: here case 8: ^~~~ libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT nodes.lo -MD -MP -MF .deps/nodes.Tpo -c src/nodes.c -fPIC -DPIC -o .libs/nodes.o mv -f .deps/connectivity.Tpo .deps/connectivity.Plo /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT status.lo -MD -MP -MF .deps/status.Tpo -c -o status.lo `test -f 'src/status.c' || echo './'`src/status.c libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT status.lo -MD -MP -MF .deps/status.Tpo -c src/status.c -fPIC -DPIC -o .libs/status.o libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT sets.lo -MD -MP -MF .deps/sets.Tpo -c src/sets.c -fPIC -DPIC -o .libs/sets.o mv -f .deps/status.Tpo .deps/status.Plo /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT tags.lo -MD -MP -MF .deps/tags.Tpo -c -o tags.lo `test -f 'src/tags.c' || echo './'`src/tags.c mv -f .deps/file-desc.Tpo .deps/file-desc.Plo /bin/sh ../../../libtool --tag=CC --mode=compile cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT util.lo -MD -MP -MF .deps/util.Tpo -c -o util.lo `test -f 'src/util.c' || echo './'`src/util.c libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT tags.lo -MD -MP -MF .deps/tags.Tpo -c src/tags.c -fPIC -DPIC -o .libs/tags.o mv -f .deps/nodes.Tpo .deps/nodes.Plo cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT validate.o -MD -MP -MF .deps/validate.Tpo -c -o validate.o `test -f 'example/validate.c' || echo './'`example/validate.c mv -f .deps/sets.Tpo .deps/sets.Plo libtool: compile: cc -I./include -I. -I../../.. -I../../../src/moab -I../../../src/parallel -I../../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT util.lo -MD -MP -MF .deps/util.Tpo -c src/util.c -fPIC -DPIC -o .libs/util.o mv -f .deps/file.Tpo .deps/file.Plo example/validate.c: In function 'main': example/validate.c:268:8: warning: '*((void *)&srange+16)' may be used uninitialized in this function [-Wmaybe-uninitialized] if (file_id >= ranges[0] && (file_id - ranges[0]) < ranges[1]) ^ example/validate.c:1000:8: note: '*((void *)&srange+16)' was declared here long 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/usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteAns.lo -MD -MP -MF .deps/WriteAns.Tpo -c WriteAns.cpp -fPIC -DPIC -o .libs/WriteAns.o mv -f .deps/VtkUtil.Tpo .deps/VtkUtil.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow 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-D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteGmsh.lo -MD -MP -MF .deps/WriteGmsh.Tpo -c WriteGmsh.cpp -fPIC -DPIC -o .libs/WriteGmsh.o mv -f .deps/WriteGMV.Tpo .deps/WriteGMV.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteSTL.lo -MD -MP -MF .deps/WriteSTL.Tpo -c -o WriteSTL.lo WriteSTL.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteSTL.lo -MD -MP -MF .deps/WriteSTL.Tpo -c WriteSTL.cpp -fPIC -DPIC -o .libs/WriteSTL.o mv -f .deps/WriteAns.Tpo .deps/WriteAns.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteSmf.lo -MD -MP -MF .deps/WriteSmf.Tpo -c -o WriteSmf.lo WriteSmf.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteSmf.lo -MD -MP -MF .deps/WriteSmf.Tpo -c WriteSmf.cpp -fPIC -DPIC -o .libs/WriteSmf.o mv -f .deps/ReadABAQUS.Tpo .deps/ReadABAQUS.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteTemplate.lo -MD -MP -MF .deps/WriteTemplate.Tpo -c -o WriteTemplate.lo WriteTemplate.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteTemplate.lo -MD -MP -MF .deps/WriteTemplate.Tpo -c WriteTemplate.cpp -fPIC -DPIC -o .libs/WriteTemplate.o mv -f .deps/WriteSTL.Tpo .deps/WriteSTL.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteVtk.lo -MD -MP -MF .deps/WriteVtk.Tpo -c -o WriteVtk.lo WriteVtk.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteVtk.lo -MD -MP -MF .deps/WriteVtk.Tpo -c WriteVtk.cpp -fPIC -DPIC -o .libs/WriteVtk.o Tqdcfr.cpp: In member function 'moab::ErrorCode moab::Tqdcfr::get_names(moab::Tqdcfr::MetaDataContainer&, unsigned int, moab::EntityHandle)': Tqdcfr.cpp:1024:10: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 32 equals destination size [-Wstringop-truncation] strncpy( name_tag_data, md_entry->mdStringValue.c_str(), NAME_TAG_SIZE ); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Tqdcfr.cpp:1044:14: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 32 equals destination size [-Wstringop-truncation] strncpy( name_tag_data, md_entry->mdStringValue.c_str(), NAME_TAG_SIZE ); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Tqdcfr.cpp: In member function 'moab::ErrorCode moab::Tqdcfr::read_group(unsigned int, moab::Tqdcfr::ModelEntry*, moab::Tqdcfr::GroupHeader*)': Tqdcfr.cpp:1095:12: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 32 equals destination size [-Wstringop-truncation] strncpy( name_tag_data, md_entry->mdStringValue.c_str(), NAME_TAG_SIZE ); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Tqdcfr.cpp:1119:18: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 32 equals destination size [-Wstringop-truncation] strncpy( name_tag_data, md_entry->mdStringValue.c_str(), NAME_TAG_SIZE ); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv -f .deps/WriteGmsh.Tpo .deps/WriteGmsh.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadNCDF.lo -MD -MP -MF .deps/ReadNCDF.Tpo -c -o ReadNCDF.lo ReadNCDF.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadNCDF.lo -MD -MP -MF .deps/ReadNCDF.Tpo -c ReadNCDF.cpp -fPIC -DPIC -o .libs/ReadNCDF.o mv -f .deps/WriteTemplate.Tpo .deps/WriteTemplate.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteNCDF.lo -MD -MP -MF .deps/WriteNCDF.Tpo -c -o WriteNCDF.lo WriteNCDF.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteNCDF.lo -MD -MP -MF .deps/WriteNCDF.Tpo -c WriteNCDF.cpp -fPIC -DPIC -o .libs/WriteNCDF.o mv -f .deps/WriteSmf.Tpo .deps/WriteSmf.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteSLAC.lo -MD -MP -MF .deps/WriteSLAC.Tpo -c -o WriteSLAC.lo WriteSLAC.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteSLAC.lo -MD -MP -MF .deps/WriteSLAC.Tpo -c WriteSLAC.cpp -fPIC -DPIC -o .libs/WriteSLAC.o WriteNCDF.cpp: In member function 'moab::ErrorCode moab::WriteNCDF::initialize_exodus_file(moab::WriteNCDF::ExodusMeshInfo&, std::vector&, std::vector&, std::vector&, const char*, bool, bool)': WriteNCDF.cpp:1530:14: warning: 'char* strncpy(char*, const char*, size_t)' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] strncpy(&working_title[pos],"/",1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mv -f .deps/WriteVtk.Tpo .deps/WriteVtk.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadNC.lo -MD -MP -MF .deps/ReadNC.Tpo -c -o ReadNC.lo ReadNC.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. 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/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT NCHelperHOMME.lo -MD -MP -MF .deps/NCHelperHOMME.Tpo -c -o NCHelperHOMME.lo NCHelperHOMME.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT NCHelperHOMME.lo -MD -MP -MF .deps/NCHelperHOMME.Tpo -c NCHelperHOMME.cpp -fPIC -DPIC -o .libs/NCHelperHOMME.o NCHelper.cpp: In member function 'moab::ErrorCode moab::NCHelper::read_coordinate(const char*, int, int, std::vector&)': NCHelper.cpp:17:10: warning: enum constant in boolean context [-Wint-in-bool-context] if (err) {_readNC->readMeshIface->report_error("%s", str); return MB_FAILURE;} ^ NCHelper.cpp:670:7: note: in expansion of macro 'ERRORS' ERRORS(MB_FAILURE, "Failed to get coordinate values."); ^~~~~~ NCHelper.cpp:17:10: warning: enum constant in boolean context [-Wint-in-bool-context] if (err) {_readNC->readMeshIface->report_error("%s", str); return MB_FAILURE;} ^ NCHelper.cpp:676:7: note: in expansion of macro 'ERRORS' ERRORS(MB_FAILURE, "Failed to get coordinate values."); ^~~~~~ mv -f .deps/WriteNC.Tpo .deps/WriteNC.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include 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/usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadHDF5.lo -MD -MP -MF .deps/ReadHDF5.Tpo -c ReadHDF5.cpp -fPIC -DPIC -o .libs/ReadHDF5.o mv -f .deps/NCWriteMPAS.Tpo .deps/NCWriteMPAS.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadHDF5Dataset.lo -MD -MP -MF .deps/ReadHDF5Dataset.Tpo -c -o ReadHDF5Dataset.lo ReadHDF5Dataset.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadHDF5Dataset.lo -MD -MP -MF .deps/ReadHDF5Dataset.Tpo -c ReadHDF5Dataset.cpp -fPIC -DPIC -o .libs/ReadHDF5Dataset.o mv -f .deps/NCWriteHOMME.Tpo .deps/NCWriteHOMME.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadHDF5VarLen.lo -MD -MP -MF .deps/ReadHDF5VarLen.Tpo -c -o ReadHDF5VarLen.lo ReadHDF5VarLen.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadHDF5VarLen.lo -MD -MP -MF .deps/ReadHDF5VarLen.Tpo -c ReadHDF5VarLen.cpp -fPIC -DPIC -o .libs/ReadHDF5VarLen.o mv -f .deps/NCHelperMPAS.Tpo .deps/NCHelperMPAS.Plo /bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteHDF5.lo -MD -MP -MF .deps/WriteHDF5.Tpo -c -o WriteHDF5.lo WriteHDF5.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT WriteHDF5.lo -MD -MP -MF .deps/WriteHDF5.Tpo -c WriteHDF5.cpp -fPIC -DPIC -o .libs/WriteHDF5.o mv -f .deps/ReadHDF5Dataset.Tpo .deps/ReadHDF5Dataset.Plo mv -f .deps/NCWriteGCRM.Tpo .deps/NCWriteGCRM.Plo mv -f .deps/ReadHDF5VarLen.Tpo .deps/ReadHDF5VarLen.Plo WriteHDF5.cpp: In instantiation of 'moab::ErrorCode moab::range_to_blocked_list_templ(HandleRangeIter, HandleRangeIter, const moab::RangeMap&, std::vector&, bool&) [with HandleRangeIter = moab::Range::const_pair_iterator]': WriteHDF5.cpp:1658:74: required from here WriteHDF5.cpp:1614:13: warning: comparison of integer expressions of different signedness: 'id_t' {aka 'long int'} and 'const long unsigned int' [-Wsign-compare] if (n > ri->count) ~~^~~~~~~~~~~ WriteHDF5.cpp:1620:75: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} and 'id_t' {aka 'long int'} [-Wsign-compare] output_id_list[output_id_list.size()-2] + output_id_list.back() == id) { WriteHDF5.cpp: In instantiation of 'moab::ErrorCode moab::range_to_blocked_list_templ(HandleRangeIter, HandleRangeIter, const moab::RangeMap&, std::vector&, bool&) [with HandleRangeIter = const std::pair*]': WriteHDF5.cpp:1671:74: required from here WriteHDF5.cpp:1614:13: warning: comparison of integer expressions of different signedness: 'id_t' {aka 'long int'} and 'const long unsigned int' [-Wsign-compare] if (n > ri->count) ~~^~~~~~~~~~~ WriteHDF5.cpp:1620:75: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} and 'id_t' {aka 'long int'} [-Wsign-compare] output_id_list[output_id_list.size()-2] + output_id_list.back() == id) { WriteHDF5.cpp: In instantiation of 'moab::ErrorCode moab::range_to_id_list_templ(HandleRangeIter, HandleRangeIter, const moab::RangeMap&, moab::WriteHDF5::id_t*) [with HandleRangeIter = moab::Range::const_pair_iterator; moab::WriteHDF5::id_t = long unsigned int]': WriteHDF5.cpp:1680:47: required from here WriteHDF5.cpp:1570:13: warning: comparison of integer expressions of different signedness: 'id_t' {aka 'long int'} and 'const long unsigned int' [-Wsign-compare] if (n > ri->count) ~~^~~~~~~~~~~ WriteHDF5.cpp: In instantiation of 'moab::ErrorCode moab::range_to_id_list_templ(HandleRangeIter, HandleRangeIter, const moab::RangeMap&, moab::WriteHDF5::id_t*) [with HandleRangeIter = const std::pair*; moab::WriteHDF5::id_t = long unsigned int]': WriteHDF5.cpp:1629:31: required from 'moab::ErrorCode moab::range_to_blocked_list_templ(HandleRangeIter, HandleRangeIter, const moab::RangeMap&, std::vector&, bool&) [with HandleRangeIter = const std::pair*]' WriteHDF5.cpp:1671:74: required from here WriteHDF5.cpp:1570:13: warning: comparison of integer expressions of different signedness: 'id_t' {aka 'long int'} and 'const long unsigned int' [-Wsign-compare] mv -f .deps/WriteHDF5.Tpo .deps/WriteHDF5.Plo mv -f .deps/ReadHDF5.Tpo .deps/ReadHDF5.Plo /bin/sh ../../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -L/usr/local/lib -lnetcdf -L/usr/local/lib -o libmoabio.la IODebugTrack.lo ExoIIUtil.lo FileTokenizer.lo GmshUtil.lo ReadABAQUS.lo ReadGmsh.lo ReadIDEAS.lo ReadMCNP5.lo ReadNASTRAN.lo ReadSmf.lo ReadSms.lo ReadSTL.lo ReadTemplate.lo ReadTetGen.lo ReadTxt.lo ReadVtk.lo SMF_State.lo Tqdcfr.lo VtkUtil.lo WriteAns.lo WriteGMV.lo WriteGmsh.lo WriteSTL.lo WriteSmf.lo WriteTemplate.lo WriteVtk.lo ReadNCDF.lo WriteNCDF.lo WriteSLAC.lo ReadNC.lo WriteNC.lo NCHelper.lo NCHelperEuler.lo NCHelperFV.lo NCHelperHOMME.lo NCHelperMPAS.lo NCHelperGCRM.lo NCWriteHelper.lo NCWriteEuler.lo NCWriteFV.lo NCWriteHOMME.lo NCWriteMPAS.lo NCWriteGCRM.lo HDF5Common.lo ReadHDF5.lo ReadHDF5Dataset.lo ReadHDF5VarLen.lo WriteHDF5.lo -lnetcdf -lhdf5 mhdf/libmhdf.la -lm libtool: link: (cd .libs/libmoabio.lax/libmhdf.a && ar x "/construction/math/moab/moab-4.6.3/src/io/mhdf/.libs/libmhdf.a") libtool: link: ar cru .libs/libmoabio.a .libs/IODebugTrack.o .libs/ExoIIUtil.o .libs/FileTokenizer.o .libs/GmshUtil.o .libs/ReadABAQUS.o .libs/ReadGmsh.o .libs/ReadIDEAS.o .libs/ReadMCNP5.o .libs/ReadNASTRAN.o .libs/ReadSmf.o .libs/ReadSms.o .libs/ReadSTL.o .libs/ReadTemplate.o .libs/ReadTetGen.o .libs/ReadTxt.o .libs/ReadVtk.o .libs/SMF_State.o .libs/Tqdcfr.o .libs/VtkUtil.o .libs/WriteAns.o .libs/WriteGMV.o .libs/WriteGmsh.o .libs/WriteSTL.o .libs/WriteSmf.o .libs/WriteTemplate.o .libs/WriteVtk.o .libs/ReadNCDF.o .libs/WriteNCDF.o .libs/WriteSLAC.o .libs/ReadNC.o .libs/WriteNC.o .libs/NCHelper.o .libs/NCHelperEuler.o .libs/NCHelperFV.o .libs/NCHelperHOMME.o .libs/NCHelperMPAS.o .libs/NCHelperGCRM.o .libs/NCWriteHelper.o .libs/NCWriteEuler.o .libs/NCWriteFV.o .libs/NCWriteHOMME.o .libs/NCWriteMPAS.o .libs/NCWriteGCRM.o .libs/HDF5Common.o .libs/ReadHDF5.o .libs/ReadHDF5Dataset.o .libs/ReadHDF5VarLen.o .libs/WriteHDF5.o .libs/libmoabio.lax/libmhdf.a/adjacency.o .libs/libmoabio.lax/libmhdf.a/connectivity.o .libs/libmoabio.lax/libmhdf.a/file-desc.o .libs/libmoabio.lax/libmhdf.a/file-handle.o .libs/libmoabio.lax/libmhdf.a/file.o 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-DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT BitTag.lo -MD -MP -MF .deps/BitTag.Tpo -c BitTag.cpp -fPIC -DPIC -o .libs/BitTag.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe 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-DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT BSPTree.lo -MD -MP -MF .deps/BSPTree.Tpo -c BSPTree.cpp -fPIC -DPIC -o .libs/BSPTree.o mv -f .deps/BoundBox.Tpo .deps/BoundBox.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem 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-DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT CN.lo -MD -MP -MF .deps/CN.Tpo -c CN.cpp -fPIC -DPIC -o .libs/CN.o mv -f .deps/BSPTreePoly.Tpo .deps/BSPTreePoly.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT CartVect.lo -MD -MP -MF .deps/CartVect.Tpo -c -o CartVect.lo CartVect.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT CartVect.lo -MD -MP -MF .deps/CartVect.Tpo -c CartVect.cpp -fPIC -DPIC -o .libs/CartVect.o CN.cpp: In function 'void MBCN_EntityTypeName(int, char*, int)': CN.cpp:660:10: warning: 'char* strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(rval, rval_tmp, rval_len_tmp); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CN.cpp:658:28: note: length computed here int rval_len_tmp = strlen(rval_tmp); ~~~~~~^~~~~~~~~~ mv -f .deps/CartVect.Tpo .deps/CartVect.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem 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function 'moab::ErrorCode moab::HigherOrderFactory::convert_sequence(moab::ElementSequence*, moab::EntityHandle, moab::EntityHandle, bool, bool, bool)': HigherOrderFactory.cpp:149:22: warning: this statement may fall through [-Wimplicit-fallthrough=] mid_face_nodes = false; ~~~~~~~~~~~~~~~^~~~~~~ HigherOrderFactory.cpp:150:5: note: here case MBTRI: ^~~~ LloydSmoother.cpp: In destructor 'moab::LloydSmoother::~LloydSmoother()': LloydSmoother.cpp:34:21: warning: throw will always call terminate() [-Wterminate] if (rval) throw rval; ^~~~ LloydSmoother.cpp:34:21: note: in C++11 destructors default to noexcept mv -f .deps/GeomTopoTool.Tpo .deps/GeomTopoTool.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io 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-Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT findpt.lo -MD -MP -MF .deps/findpt.Tpo -c -o findpt.lo `test -f 'lotte/findpt.c' || echo './'`lotte/findpt.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT findpt.lo -MD -MP -MF .deps/findpt.Tpo -c lotte/findpt.c -fPIC -DPIC -o .libs/findpt.o lotte/findpt.c:1125:19: warning: 'opt_constr_dir_2' defined but not used [-Wunused-const-variable=] static const char opt_constr_dir_2[9] = {-1, 1,-1, 0,-1, 0, -1, 1,-1}; ^~~~~~~~~~~~~~~~ mv -f .deps/MeshSetSequence.Tpo .deps/MeshSetSequence.Plo /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT errmem.lo -MD -MP -MF .deps/errmem.Tpo -c -o errmem.lo `test -f 'lotte/errmem.c' || echo './'`lotte/errmem.c OrientedBoxTreeTool.cpp: In function 'bool moab::edge_node_intersect(moab::EntityHandle, const moab::CartVect&, moab::GeomUtil::intersection_type, const std::vector&, const std::vector&, const moab::Interface*, std::vector*)': OrientedBoxTreeTool.cpp:66:41: warning: enum constant in boolean context [-Wint-in-bool-context] if(MB_SUCCESS!=rval || 3!=len) return MB_FAILURE; ^~~~~~~~~~ OrientedBoxTreeTool.cpp:85:45: warning: enum constant in boolean context [-Wint-in-bool-context] if(MB_SUCCESS!=rval || 3!=len) return MB_FAILURE; ^~~~~~~~~~ OrientedBoxTreeTool.cpp:94:14: warning: enum constant in boolean context [-Wint-in-bool-context] return MB_FAILURE; ^~~~~~~~~~ OrientedBoxTreeTool.cpp:116:45: warning: enum constant in boolean context [-Wint-in-bool-context] if(MB_SUCCESS!=rval || 3!=len) return MB_FAILURE; ^~~~~~~~~~ OrientedBoxTreeTool.cpp:138:12: warning: enum constant in boolean context [-Wint-in-bool-context] return MB_FAILURE; ^~~~~~~~~~ OrientedBoxTreeTool.cpp:153:43: warning: enum constant in boolean context [-Wint-in-bool-context] if(MB_SUCCESS!=rval || 3!=len) return MB_FAILURE; ^~~~~~~~~~ OrientedBoxTreeTool.cpp:156:35: warning: enum constant in boolean context [-Wint-in-bool-context] if(MB_SUCCESS != rval) return MB_FAILURE; ^~~~~~~~~~ libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT errmem.lo -MD -MP -MF .deps/errmem.Tpo -c lotte/errmem.c -fPIC -DPIC -o .libs/errmem.o mv -f .deps/errmem.Tpo .deps/errmem.Plo /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT tensor.lo -MD -MP -MF .deps/tensor.Tpo -c -o tensor.lo `test -f 'lotte/tensor.c' || echo './'`lotte/tensor.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT tensor.lo -MD -MP -MF .deps/tensor.Tpo -c lotte/tensor.c -fPIC -DPIC -o .libs/tensor.o mv -f .deps/tensor.Tpo .deps/tensor.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT PolyElementSeq.lo -MD -MP -MF .deps/PolyElementSeq.Tpo -c -o PolyElementSeq.lo PolyElementSeq.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT PolyElementSeq.lo -MD -MP -MF .deps/PolyElementSeq.Tpo -c PolyElementSeq.cpp -fPIC -DPIC -o .libs/PolyElementSeq.o mv -f .deps/MeshTopoUtil.Tpo .deps/MeshTopoUtil.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ProgOptions.lo -MD -MP -MF .deps/ProgOptions.Tpo -c -o ProgOptions.lo ProgOptions.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ProgOptions.lo -MD -MP -MF .deps/ProgOptions.Tpo -c ProgOptions.cpp -fPIC -DPIC -o .libs/ProgOptions.o mv -f .deps/PolyElementSeq.Tpo .deps/PolyElementSeq.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT Range.lo -MD -MP -MF .deps/Range.Tpo -c -o Range.lo Range.cpp mv -f .deps/OrientedBox.Tpo .deps/OrientedBox.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT RangeSeqIntersectIter.lo -MD -MP -MF .deps/RangeSeqIntersectIter.Tpo -c -o RangeSeqIntersectIter.lo RangeSeqIntersectIter.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT Range.lo -MD -MP -MF .deps/Range.Tpo -c Range.cpp -fPIC -DPIC -o .libs/Range.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT RangeSeqIntersectIter.lo -MD -MP -MF .deps/RangeSeqIntersectIter.Tpo -c RangeSeqIntersectIter.cpp -fPIC -DPIC -o .libs/RangeSeqIntersectIter.o mv -f .deps/findpt.Tpo .deps/findpt.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadUtil.lo -MD -MP -MF .deps/ReadUtil.Tpo -c -o ReadUtil.lo ReadUtil.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReadUtil.lo -MD -MP -MF .deps/ReadUtil.Tpo -c ReadUtil.cpp -fPIC -DPIC -o .libs/ReadUtil.o mv -f .deps/RangeSeqIntersectIter.Tpo .deps/RangeSeqIntersectIter.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReaderWriterSet.lo -MD -MP -MF .deps/ReaderWriterSet.Tpo -c -o ReaderWriterSet.lo ReaderWriterSet.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReaderWriterSet.lo -MD -MP -MF .deps/ReaderWriterSet.Tpo -c ReaderWriterSet.cpp -fPIC -DPIC -o .libs/ReaderWriterSet.o mv -f .deps/Range.Tpo .deps/Range.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReorderTool.lo -MD -MP -MF .deps/ReorderTool.Tpo -c -o ReorderTool.lo ReorderTool.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ReorderTool.lo -MD -MP -MF .deps/ReorderTool.Tpo -c ReorderTool.cpp -fPIC -DPIC -o .libs/ReorderTool.o mv -f .deps/ReadUtil.Tpo .deps/ReadUtil.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ScdElementData.lo -MD -MP -MF .deps/ScdElementData.Tpo -c -o ScdElementData.lo ScdElementData.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ScdElementData.lo -MD -MP -MF .deps/ScdElementData.Tpo -c ScdElementData.cpp -fPIC -DPIC -o .libs/ScdElementData.o ScdElementData.cpp: In static member function 'static moab::EntityID moab::ScdElementData::calc_num_entities(moab::EntityHandle, int, int, int, int*)': ScdElementData.cpp:33:20: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: result *= krange; ~~~~~~~^~~~~~~~~ ScdElementData.cpp:34:5: note: here case 2: result *= (is_periodic && is_periodic[1] ? (jrange+1) : jrange); ^~~~ ScdElementData.cpp:34:20: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: result *= (is_periodic && is_periodic[1] ? (jrange+1) : jrange); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ScdElementData.cpp:35:5: note: here case 1: result *= (is_periodic && is_periodic[0] ? (irange+1) : irange); ^~~~ mv -f .deps/ScdElementData.Tpo .deps/ScdElementData.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ScdInterface.lo -MD -MP -MF .deps/ScdInterface.Tpo -c -o ScdInterface.lo ScdInterface.cpp mv -f .deps/ReaderWriterSet.Tpo .deps/ReaderWriterSet.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ScdVertexData.lo -MD -MP -MF .deps/ScdVertexData.Tpo -c -o ScdVertexData.lo ScdVertexData.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ScdInterface.lo -MD -MP -MF .deps/ScdInterface.Tpo -c ScdInterface.cpp -fPIC -DPIC -o .libs/ScdInterface.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT ScdVertexData.lo -MD -MP -MF .deps/ScdVertexData.Tpo -c ScdVertexData.cpp -fPIC -DPIC -o .libs/ScdVertexData.o mv -f .deps/ScdVertexData.Tpo .deps/ScdVertexData.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SequenceData.lo -MD -MP -MF .deps/SequenceData.Tpo -c -o SequenceData.lo SequenceData.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SequenceData.lo -MD -MP -MF .deps/SequenceData.Tpo -c SequenceData.cpp -fPIC -DPIC -o .libs/SequenceData.o In file included from OrientedBoxTreeTool.cpp:24: OrientedBox.hpp: In member function 'moab::ErrorCode moab::OrientedBoxTreeTool::join_trees(const moab::Range&, moab::EntityHandle&, const moab::OrientedBoxTreeTool::Settings*)': OrientedBox.hpp:100:10: warning: '*((void*)(&)+8).moab::OrientedBox::CovarienceData::center' may be used uninitialized in this function [-Wmaybe-uninitialized] struct CovarienceData { ^~~~~~~~~~~~~~ mv -f .deps/SequenceData.Tpo .deps/SequenceData.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SequenceManager.lo -MD -MP -MF .deps/SequenceManager.Tpo -c -o SequenceManager.lo SequenceManager.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SequenceManager.lo -MD -MP -MF .deps/SequenceManager.Tpo -c SequenceManager.cpp -fPIC -DPIC -o .libs/SequenceManager.o mv -f .deps/ReorderTool.Tpo .deps/ReorderTool.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SetIterator.lo -MD -MP -MF .deps/SetIterator.Tpo -c -o SetIterator.lo SetIterator.cpp mv -f .deps/ProgOptions.Tpo .deps/ProgOptions.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT Skinner.lo -MD -MP -MF .deps/Skinner.Tpo -c -o Skinner.lo Skinner.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SetIterator.lo -MD -MP -MF .deps/SetIterator.Tpo -c SetIterator.cpp -fPIC -DPIC -o .libs/SetIterator.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT Skinner.lo -MD -MP -MF .deps/Skinner.Tpo -c Skinner.cpp -fPIC -DPIC -o .libs/Skinner.o mv -f .deps/OrientedBoxTreeTool.Tpo .deps/OrientedBoxTreeTool.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SmoothCurve.lo -MD -MP -MF .deps/SmoothCurve.Tpo -c -o SmoothCurve.lo SmoothCurve.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SmoothCurve.lo -MD -MP -MF .deps/SmoothCurve.Tpo -c SmoothCurve.cpp -fPIC -DPIC -o .libs/SmoothCurve.o Skinner.cpp: In constructor 'moab::AdjSides::Side::Side(const EntityHandle*, int, moab::EntityHandle, short unsigned int) [with unsigned int CORNERS = 2]': Skinner.cpp:1231:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4: handles[2] = array[(idx+3)%CORNERS]; ^~~~~~~ Skinner.cpp:1232:9: note: here case 3: handles[1] = array[(idx+2)%CORNERS]; ^~~~ Skinner.cpp:1232:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: handles[1] = array[(idx+2)%CORNERS]; ^~~~~~~ Skinner.cpp:1233:9: note: here case 2: handles[0] = array[(idx+1)%CORNERS]; ^~~~ Skinner.cpp: In constructor 'moab::AdjSides::Side::Side(const EntityHandle*, int, moab::EntityHandle, short unsigned int) [with unsigned int CORNERS = 3]': Skinner.cpp:1231:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4: handles[2] = array[(idx+3)%CORNERS]; ^~~~~~~ Skinner.cpp:1232:9: note: here case 3: handles[1] = array[(idx+2)%CORNERS]; ^~~~ Skinner.cpp:1232:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: handles[1] = array[(idx+2)%CORNERS]; ^~~~~~~ Skinner.cpp:1233:9: note: here case 2: handles[0] = array[(idx+1)%CORNERS]; ^~~~ Skinner.cpp: In constructor 'moab::AdjSides::Side::Side(const EntityHandle*, int, moab::EntityHandle, short unsigned int) [with unsigned int CORNERS = 4]': Skinner.cpp:1231:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4: handles[2] = array[(idx+3)%CORNERS]; ^~~~~~~ Skinner.cpp:1232:9: note: here case 3: handles[1] = array[(idx+2)%CORNERS]; ^~~~ Skinner.cpp:1232:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: handles[1] = array[(idx+2)%CORNERS]; ^~~~~~~ Skinner.cpp:1233:9: note: here case 2: handles[0] = array[(idx+1)%CORNERS]; ^~~~ Skinner.cpp: In constructor 'moab::AdjSides::Side::Side(const EntityHandle*, int, moab::EntityHandle, short unsigned int, const short int*) [with unsigned int CORNERS = 3]': Skinner.cpp:1259:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4: handles[2] = array[indices[(idx+3)%CORNERS]]; ^~~~~~~ Skinner.cpp:1260:9: note: here case 3: handles[1] = array[indices[(idx+2)%CORNERS]]; ^~~~ Skinner.cpp:1260:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: handles[1] = array[indices[(idx+2)%CORNERS]]; ^~~~~~~ Skinner.cpp:1261:9: note: here case 2: handles[0] = array[indices[(idx+1)%CORNERS]]; ^~~~ Skinner.cpp: In constructor 'moab::AdjSides::Side::Side(const EntityHandle*, int, moab::EntityHandle, short unsigned int, const short int*) [with unsigned int CORNERS = 4]': Skinner.cpp:1259:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4: handles[2] = array[indices[(idx+3)%CORNERS]]; ^~~~~~~ Skinner.cpp:1260:9: note: here case 3: handles[1] = array[indices[(idx+2)%CORNERS]]; ^~~~ Skinner.cpp:1260:17: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: handles[1] = array[indices[(idx+2)%CORNERS]]; ^~~~~~~ Skinner.cpp:1261:9: note: here case 2: handles[0] = array[indices[(idx+1)%CORNERS]]; ^~~~ mv -f .deps/SequenceManager.Tpo .deps/SequenceManager.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SmoothFace.lo -MD -MP -MF .deps/SmoothFace.Tpo -c -o SmoothFace.lo SmoothFace.cpp mv -f .deps/SetIterator.Tpo .deps/SetIterator.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SparseTag.lo -MD -MP -MF .deps/SparseTag.Tpo -c -o SparseTag.lo SparseTag.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SmoothFace.lo -MD -MP -MF .deps/SmoothFace.Tpo -c SmoothFace.cpp 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-I../src/moab -I../src/parallel -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT TypeSequenceManager.lo -MD -MP -MF .deps/TypeSequenceManager.Tpo -c TypeSequenceManager.cpp -fPIC -DPIC -o .libs/TypeSequenceManager.o TupleList.cpp: In member function 'int moab::TupleList::find(unsigned int, realType)': TupleList.cpp:345:16: warning: logical not is only applied to the left hand side of comparison 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AEntityFactory.lo AffineXform.lo AxisBox.lo BitPage.lo BitTag.lo BoundBox.lo BSPTree.lo BSPTreePoly.lo BVHTree.lo CN.lo CartVect.lo Core.lo DebugOutput.lo DenseTag.lo DualTool.lo EntitySequence.lo Factory.lo FBEngine.lo FileOptions.lo GeomUtil.lo GeomTopoTool.lo HigherOrderFactory.lo HomXform.lo LloydSmoother.lo MergeMesh.lo MeshSet.lo MeshSetSequence.lo MeshTag.lo MeshTopoUtil.lo OrientedBox.lo OrientedBoxTreeTool.lo poly.lo findpt.lo errmem.lo tensor.lo PolyElementSeq.lo ProgOptions.lo Range.lo RangeSeqIntersectIter.lo ReadUtil.lo ReaderWriterSet.lo ReorderTool.lo ScdElementData.lo ScdInterface.lo ScdVertexData.lo SequenceData.lo SequenceManager.lo SetIterator.lo Skinner.lo SmoothCurve.lo SmoothFace.lo SparseTag.lo SpatialLocator.lo SpectralMeshTool.lo StructuredElementSeq.lo SweptElementData.lo SweptElementSeq.lo SweptVertexData.lo SysUtil.lo TagInfo.lo Tree.lo TupleList.lo Types.lo TypeSequenceManager.lo UnstructuredElemSeq.lo Util.lo VarLenDenseTag.lo VarLenSparseTag.lo 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-Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT measure.o -MD -MP -MF .deps/measure.Tpo -c -o measure.o measure.cpp c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT size.o -MD -MP -MF .deps/size.Tpo -c -o size.o size.cpp c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT skin.o -MD -MP -MF .deps/skin.Tpo -c -o skin.o skin.cpp measure.cpp: In function 'double measure(moab::EntityType, int, const double*)': measure.cpp:165:20: warning: this statement may fall through [-Wimplicit-fallthrough=] num_vertices = 4; ~~~~~~~~~~~~~^~~ measure.cpp:166:5: note: here case moab::MBPOLYGON: ^~~~ mv -f .deps/measure.Tpo .deps/measure.Po c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT depth.o -MD -MP -MF .deps/depth.Tpo -c -o depth.o depth.cpp size.cpp: In function 'void print_tag_counts(const std::vector&)': size.cpp:268:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (EntityType t = MBVERTEX; t != MBMAXTYPE; ++t) ^~~ size.cpp:271:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' printf("\n"); ^~~~~~ mv -f .deps/makeops.Tpo .deps/makeops.Po c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT parse.o -MD -MP -MF .deps/parse.Tpo -c -o parse.o parse.cpp mv -f .deps/depth.Tpo .deps/depth.Po c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT propagate_tags.o -MD -MP -MF .deps/propagate_tags.Tpo -c -o propagate_tags.o propagate_tags.cpp mv -f .deps/size.Tpo .deps/size.Po c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT mbmem.o -MD -MP -MF .deps/mbmem.Tpo -c -o mbmem.o mbmem.cpp mv -f .deps/skin.Tpo .deps/skin.Po c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT SphereDecomp.o -MD -MP -MF .deps/SphereDecomp.Tpo -c -o SphereDecomp.o SphereDecomp.cpp mv -f .deps/convert.Tpo .deps/convert.Po c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT sphere_decomp.o -MD -MP -MF .deps/sphere_decomp.Tpo -c -o sphere_decomp.o sphere_decomp.cpp mv -f .deps/propagate_tags.Tpo .deps/propagate_tags.Po c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT surfplot.o -MD -MP -MF .deps/surfplot.Tpo -c -o surfplot.o surfplot.cpp mv -f .deps/SphereDecomp.Tpo .deps/SphereDecomp.Po c++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src -I/usr/local/include -fPIC -DPIC -isystem /usr/local/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IEEEFP_H -DHDF5_FILE -DNETCDF_FILE -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -isystem /usr/local/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -MT gsets.o -MD -MP -MF .deps/gsets.Tpo -c -o gsets.o gsets.cc mv -f .deps/parse.Tpo .deps/parse.Po /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -L/usr/local/lib -lnetcdf -L/usr/local/lib -o mbconvert convert.o ../src/libMOAB.la ../itaps/imesh/libiMesh.la -lm libtool: link: c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -o .libs/mbconvert convert.o -L/usr/local/lib ../src/.libs/libMOAB.so ../itaps/imesh/.libs/libiMesh.so /construction/math/moab/moab-4.6.3/src/.libs/libMOAB.so -lm -lhdf5 -lnetcdf -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith 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'/construction/math/moab/moab-4.6.3' gmake[2]: Leaving directory '/construction/math/moab/moab-4.6.3' gmake[1]: Leaving directory '/construction/math/moab/moab-4.6.3' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for moab-4.6.3 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/math/moab/moab-4.6.3' Making install in src gmake[2]: Entering directory '/construction/math/moab/moab-4.6.3/src' gmake install-recursive gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/src' Making install in io gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/src/io' Making install in mhdf gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/src/io/mhdf' gmake[6]: Entering directory '/construction/math/moab/moab-4.6.3/src/io/mhdf' /bin/mkdir -p '/construction/math/moab/stage/usr/local/bin' /bin/sh ../../../libtool --mode=install install -s -m 555 h5minfo h5mvalidate '/construction/math/moab/stage/usr/local/bin' libtool: install: install -m 555 -s h5minfo /construction/math/moab/stage/usr/local/bin/h5minfo libtool: install: install -m 555 -s h5mvalidate /construction/math/moab/stage/usr/local/bin/h5mvalidate gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/construction/math/moab/moab-4.6.3/src/io/mhdf' gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/src/io/mhdf' Making install in . gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/src/io' gmake[6]: Entering directory '/construction/math/moab/moab-4.6.3/src/io' gmake[6]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/math/moab/stage/usr/local/include' /bin/mkdir -p '/construction/math/moab/stage/usr/local/include/moab' install -m 0644 moab/ExoIIInterface.hpp '/construction/math/moab/stage/usr/local/include/moab' gmake[6]: Leaving directory '/construction/math/moab/moab-4.6.3/src/io' gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/src/io' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/src/io' Making install in LocalDiscretization gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/src/LocalDiscretization' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/src/LocalDiscretization' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/math/moab/stage/usr/local/include' /bin/mkdir -p '/construction/math/moab/stage/usr/local/include/moab' install -m 0644 moab/ElemEvaluator.hpp moab/LinearHex.hpp moab/LinearQuad.hpp moab/LinearTet.hpp moab/LinearTri.hpp moab/QuadraticHex.hpp '/construction/math/moab/stage/usr/local/include/moab' gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/src/LocalDiscretization' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/src/LocalDiscretization' Making install in . gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/src' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/src' /bin/mkdir -p '/construction/math/moab/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libMOAB.la '/construction/math/moab/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libMOAB.so.0.0.0 /construction/math/moab/stage/usr/local/lib/libMOAB.so.0.0.0 libtool: install: (cd /construction/math/moab/stage/usr/local/lib && { ln -s -f libMOAB.so.0.0.0 libMOAB.so.0 || { rm -f libMOAB.so.0 && ln -s libMOAB.so.0.0.0 libMOAB.so.0; }; }) libtool: install: (cd /construction/math/moab/stage/usr/local/lib && { ln -s -f libMOAB.so.0.0.0 libMOAB.so || { rm -f libMOAB.so && ln -s libMOAB.so.0.0.0 libMOAB.so; }; }) libtool: install: /usr/bin/install -c .libs/libMOAB.lai /construction/math/moab/stage/usr/local/lib/libMOAB.la libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/construction/math/moab/stage/usr/local/include' /bin/mkdir -p '/construction/math/moab/stage/usr/local/include/moab' install -m 0644 moab/AdaptiveKDTree.hpp moab/BoundBox.hpp moab/BSPTree.hpp moab/BSPTreePoly.hpp moab/BVHTree.hpp moab/CN.hpp moab/CartVect.hpp moab/Compiler.hpp moab/Core.hpp moab/CpuTimer.hpp moab/DualTool.hpp moab/Error.hpp moab/GeomTopoTool.hpp moab/HigherOrderFactory.hpp moab/HomXform.hpp moab/EntityType.hpp moab/EntityHandle.hpp moab/FBEngine.hpp moab/FileOptions.hpp moab/FindPtFuncs.h moab/Forward.hpp moab/GeomUtil.hpp moab/Interface.hpp moab/LloydSmoother.hpp moab/Matrix3.hpp moab/MergeMesh.hpp moab/MeshTopoUtil.hpp moab/OrientedBoxTreeTool.hpp moab/ProgOptions.hpp moab/Range.hpp moab/RangeMap.hpp moab/ReadUtilIface.hpp moab/ReaderIface.hpp moab/ReaderWriterSet.hpp moab/ReorderTool.hpp moab/ScdInterface.hpp moab/SetIterator.hpp moab/Skinner.hpp moab/SpatialLocator.hpp moab/SpatialLocatorTimes.hpp '/construction/math/moab/stage/usr/local/include/moab' /bin/mkdir -p '/construction/math/moab/stage/usr/local/include/moab/point_locater' install -m 0644 moab/point_locater/io.hpp moab/point_locater/point_locater.hpp moab/point_locater/parametrizer.hpp '/construction/math/moab/stage/usr/local/include/moab/point_locater' /bin/mkdir -p '/construction/math/moab/stage/usr/local/include/moab/point_locater/element_maps' install -m 0644 moab/point_locater/element_maps/linear_hex_map.hpp moab/point_locater/element_maps/linear_tet_map.hpp moab/point_locater/element_maps/spectral_hex_map.hpp moab/point_locater/element_maps/quadratic_hex_map.hpp '/construction/math/moab/stage/usr/local/include/moab/point_locater/element_maps' /bin/mkdir -p '/construction/math/moab/stage/usr/local/include/moab/point_locater/tree' install -m 0644 moab/point_locater/tree/common_tree.hpp moab/point_locater/tree/element_tree.hpp moab/point_locater/tree/bvh_tree.hpp '/construction/math/moab/stage/usr/local/include/moab/point_locater/tree' /bin/mkdir -p '/construction/math/moab/stage/usr/local/include/moab' install -m 0644 moab/SpectralMeshTool.hpp moab/Tree.hpp moab/TreeStats.hpp moab/TupleList.hpp moab/Types.hpp moab/UnknownInterface.hpp moab/Util.hpp moab/Version.h moab/WriteUtilIface.hpp moab/WriterIface.hpp '/construction/math/moab/stage/usr/local/include/moab' install -m 0644 MBEntityType.h MBCN.h MOAB_FCDefs.h MBCN_protos.h MBTagConventions.hpp '/construction/math/moab/stage/usr/local/include/.' gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/src' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/src' Making install in oldinc gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/src/oldinc' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/src/oldinc' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/math/moab/stage/usr/local/include' install -m 0644 MBAdaptiveKDTree.hpp MBBSPTree.hpp MBBSPTreePoly.hpp MBCartVect.hpp MBCN.hpp MBCore.hpp MBEntityHandle.h MBForward.hpp MBGeomUtil.hpp MBInterface.hpp MBmpi.h MBOrientedBoxTreeTool.hpp MBParallelComm.hpp MBParallelData.hpp MBProcConfig.hpp MBRange.hpp MBReaderIface.hpp MBReaderWriterSet.hpp MBReadUtilIface.hpp MBSkinner.hpp MBTypes.h MBUnknownInterface.hpp MBUtil.hpp MBVersion.h MBWriterIface.hpp MBWriteUtilIface.hpp '/construction/math/moab/stage/usr/local/include' gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/src/oldinc' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/src/oldinc' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/src' gmake[2]: Leaving directory '/construction/math/moab/moab-4.6.3/src' Making install in MeshFiles gmake[2]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles' Making install in unittest gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest' Making install in io gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/io' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/io' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/io' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/io' Making install in dagmc gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/dagmc' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/dagmc' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/dagmc' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/dagmc' Making install in iGeom gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/iGeom' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/iGeom' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/iGeom' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest/iGeom' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles/unittest' gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/MeshFiles' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles' gmake[2]: Leaving directory '/construction/math/moab/moab-4.6.3/MeshFiles' Making install in itaps gmake[2]: Entering directory '/construction/math/moab/moab-4.6.3/itaps' Making install in imesh gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/itaps/imesh' gmake install-am gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/itaps/imesh' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/itaps/imesh' /bin/mkdir -p '/construction/math/moab/stage/usr/local/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libiMesh.la '/construction/math/moab/stage/usr/local/lib' libtool: warning: relinking 'libiMesh.la' libtool: install: (cd /construction/math/moab/moab-4.6.3/itaps/imesh; /bin/sh "/construction/math/moab/moab-4.6.3/libtool" --tag CXX --mode=relink c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -L/usr/local/lib -lnetcdf -L/usr/local/lib -o libiMesh.la -rpath /usr/local/lib iMesh_MOAB.lo ../../src/libMOAB.la -lm -inst-prefix-dir /construction/math/moab/stage) libtool: relink: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/gcc80/crtbeginS.o .libs/iMesh_MOAB.o -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib ../../src/.libs/libMOAB.so -lhdf5 -lnetcdf -L/usr/lib/gcc80 -lstdc++ -lm -lc -lgcc -lgcc_pic /usr/lib/gcc80/crtendS.o /usr/lib/crtn.o -O2 -Wl,-soname -Wl,libiMesh.so.0 -o .libs/libiMesh.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libiMesh.so.0.0.0T /construction/math/moab/stage/usr/local/lib/libiMesh.so.0.0.0 libtool: install: (cd /construction/math/moab/stage/usr/local/lib && { ln -s -f libiMesh.so.0.0.0 libiMesh.so.0 || { rm -f libiMesh.so.0 && ln -s libiMesh.so.0.0.0 libiMesh.so.0; }; }) libtool: install: (cd /construction/math/moab/stage/usr/local/lib && { ln -s -f libiMesh.so.0.0.0 libiMesh.so || { rm -f libiMesh.so && ln -s libiMesh.so.0.0.0 libiMesh.so; }; }) libtool: install: /usr/bin/install -c .libs/libiMesh.lai /construction/math/moab/stage/usr/local/lib/libiMesh.la libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/construction/math/moab/stage/usr/local/lib' install -m 0644 iMesh-Defs.inc '/construction/math/moab/stage/usr/local/lib' /bin/mkdir -p '/construction/math/moab/stage/usr/local/include' install -m 0644 iMesh.h iMesh_extensions.h iMesh_extensions_protos.h iMesh_f.h iMesh_protos.h MBiMesh.hpp '/construction/math/moab/stage/usr/local/include' gmake install-data-hook gmake[6]: Entering directory '/construction/math/moab/moab-4.6.3/itaps/imesh' echo "IMESH_INCLUDEDIR=/usr/local/include" >> /construction/math/moab/stage/usr/local/lib/iMesh-Defs.inc echo "IMESH_INCLUDEDIR2=" >> /construction/math/moab/stage/usr/local/lib/iMesh-Defs.inc echo "IMESH_LIBDIR=/usr/local/lib" >> /construction/math/moab/stage/usr/local/lib/iMesh-Defs.inc echo "MOAB_LIBDIR=/usr/local/lib" >> /construction/math/moab/stage/usr/local/lib/iMesh-Defs.inc gmake[6]: Leaving directory '/construction/math/moab/moab-4.6.3/itaps/imesh' gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/itaps/imesh' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/itaps/imesh' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/itaps/imesh' gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/itaps' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/itaps' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/math/moab/stage/usr/local/include' install -m 0644 iBase.h iBase_f.h '/construction/math/moab/stage/usr/local/include' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/itaps' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/itaps' gmake[2]: Leaving directory '/construction/math/moab/moab-4.6.3/itaps' Making install in tools gmake[2]: Entering directory '/construction/math/moab/moab-4.6.3/tools' Making install in . gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/tools' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/tools' /bin/mkdir -p '/construction/math/moab/stage/usr/local/bin' /bin/sh ../libtool --mode=install install -s -m 555 mbconvert hexmodops mbsize mbskin mbdepth mbtagprop mbmem spheredecomp mbsurfplot mbgsets '/construction/math/moab/stage/usr/local/bin' libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/mbconvert /construction/math/moab/stage/usr/local/bin/mbconvert libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/hexmodops /construction/math/moab/stage/usr/local/bin/hexmodops libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/mbsize /construction/math/moab/stage/usr/local/bin/mbsize libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/mbskin /construction/math/moab/stage/usr/local/bin/mbskin libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/mbdepth /construction/math/moab/stage/usr/local/bin/mbdepth libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/mbtagprop /construction/math/moab/stage/usr/local/bin/mbtagprop libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/mbmem /construction/math/moab/stage/usr/local/bin/mbmem libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/spheredecomp /construction/math/moab/stage/usr/local/bin/spheredecomp libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/mbsurfplot /construction/math/moab/stage/usr/local/bin/mbsurfplot libtool: warning: '../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: warning: '../itaps/imesh/libiMesh.la' has not been installed in '/usr/local/lib' libtool: warning: '/construction/math/moab/moab-4.6.3/src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/mbgsets /construction/math/moab/stage/usr/local/bin/mbgsets /bin/mkdir -p '/construction/math/moab/stage/usr/local/share/doc/moab' install -m 0644 README.mbconvert README.hexmodops README.mbsize README.mbskin README.mbtagprop README.spheredecomp README.mbsurfplot '/construction/math/moab/stage/usr/local/share/doc/moab' /bin/mkdir -p '/construction/math/moab/stage/usr/local/man/man1' install -m 0644 'mbconvert.man' '/construction/math/moab/stage/usr/local/man/man1/mbconvert.1' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/tools' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/tools' Making install in dagmc gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/tools/dagmc' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/tools/dagmc' /bin/mkdir -p '/construction/math/moab/stage/usr/local/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libdagmc.la '/construction/math/moab/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libdagmc.so.0.0.0 /construction/math/moab/stage/usr/local/lib/libdagmc.so.0.0.0 libtool: install: (cd /construction/math/moab/stage/usr/local/lib && { ln -s -f libdagmc.so.0.0.0 libdagmc.so.0 || { rm -f libdagmc.so.0 && ln -s libdagmc.so.0.0.0 libdagmc.so.0; }; }) libtool: install: (cd /construction/math/moab/stage/usr/local/lib && { ln -s -f libdagmc.so.0.0.0 libdagmc.so || { rm -f libdagmc.so && ln -s libdagmc.so.0.0.0 libdagmc.so; }; }) libtool: install: /usr/bin/install -c .libs/libdagmc.lai /construction/math/moab/stage/usr/local/lib/libdagmc.la libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/construction/math/moab/stage/usr/local/bin' /bin/sh ../../libtool --mode=install install -s -m 555 dagmc_preproc '/construction/math/moab/stage/usr/local/bin' libtool: warning: 'libdagmc.la' has not been installed in '/usr/local/lib' libtool: warning: '../../src/libMOAB.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/dagmc_preproc /construction/math/moab/stage/usr/local/bin/dagmc_preproc /bin/mkdir -p '/construction/math/moab/stage/usr/local/include' install -m 0644 DagMC.hpp '/construction/math/moab/stage/usr/local/include' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/tools/dagmc' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/tools/dagmc' gmake[2]: Leaving directory '/construction/math/moab/moab-4.6.3/tools' Making install in test gmake[2]: Entering directory '/construction/math/moab/moab-4.6.3/test' Making install in . gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/test' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/test' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/test' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/test' Making install in io gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/test/io' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/test/io' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/test/io' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/test/io' Making install in dual gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/test/dual' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/test/dual' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/test/dual' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/test/dual' Making install in obb gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/test/obb' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/test/obb' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/test/obb' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/test/obb' Making install in perf gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/test/perf' Making install in point_location gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/test/perf/point_location' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/test/perf/point_location' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/test/perf/point_location' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/test/perf/point_location' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/test/perf' gmake[5]: Entering directory '/construction/math/moab/moab-4.6.3/test/perf' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/math/moab/moab-4.6.3/test/perf' gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/test/perf' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/test/perf' Making install in dagmc gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/test/dagmc' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/test/dagmc' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/test/dagmc' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/test/dagmc' Making install in h5file gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/test/h5file' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/test/h5file' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/test/h5file' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/test/h5file' Making install in oldinc gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/test/oldinc' gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3/test/oldinc' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3/test/oldinc' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/test/oldinc' gmake[2]: Leaving directory '/construction/math/moab/moab-4.6.3/test' Making install in doc gmake[2]: Entering directory '/construction/math/moab/moab-4.6.3/doc' gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3/doc' gmake[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/math/moab/stage/usr/local/share/doc/moab' install -m 0644 MOAB-UG.doc MOAB-performance.doc seq.pdf '/construction/math/moab/stage/usr/local/share/doc/moab' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3/doc' gmake[2]: Leaving directory '/construction/math/moab/moab-4.6.3/doc' gmake[2]: Entering directory '/construction/math/moab/moab-4.6.3' gmake[3]: Entering directory '/construction/math/moab/moab-4.6.3' gmake[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/math/moab/stage/usr/local/lib' install -m 0644 moab.make moab.config MOABConfig.cmake '/construction/math/moab/stage/usr/local/lib' /bin/mkdir -p '/construction/math/moab/stage/usr/local/share/doc/moab' install -m 0644 ANNOUNCE KNOWN_ISSUES LICENSE README README.IO README.IMESH RELEASE_NOTES '/construction/math/moab/stage/usr/local/share/doc/moab' gmake install-data-hook gmake[4]: Entering directory '/construction/math/moab/moab-4.6.3' echo "MOAB_LIBDIR=/usr/local/lib" >> /construction/math/moab/stage/usr/local/lib/moab.make echo "MOAB_INCLUDES=-I/usr/local/include" >> /construction/math/moab/stage/usr/local/lib/moab.make echo "SET(MOAB_INCLUDE_DIRS \"/usr/local/include\")" >> /construction/math/moab/stage/usr/local/lib/MOABConfig.cmake echo -n "SET(MOAB_LIBRARIES \"" >> /construction/math/moab/stage/usr/local/lib/MOABConfig.cmake echo -n " -L/usr/local/lib -lnetcdf -L/usr/local/lib -lMOAB -lm -lnetcdf -lhdf5 " | \ sed -e 's/^ *//;s/ *$/\")\n/' >> /construction/math/moab/stage/usr/local/lib/MOABConfig.cmake gmake[4]: Leaving directory '/construction/math/moab/moab-4.6.3' gmake[3]: Leaving directory '/construction/math/moab/moab-4.6.3' gmake[2]: Leaving directory '/construction/math/moab/moab-4.6.3' gmake[1]: Leaving directory '/construction/math/moab/moab-4.6.3' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for moab-4.6.3 file sizes/checksums [154]: .. done packing files [154]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Monday, 10 DEC 2018 at 18:10:08 UTC Duration: 00:04:13