=> Building biology/py-orange3-single-cell@py36 Started : Sunday, 9 DEC 2018 at 13:26:55 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.25.g9bb66-DEVELOPMENT #33: Mon Dec 3 06:33:52 PST 2018 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for py36-orange3-single-cell-0.8.2: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/biology/py-orange3-single-cell XDG_CONFIG_HOME=/construction/biology/py-orange3-single-cell HOME=/construction/biology/py-orange3-single-cell TMPDIR="/tmp" PATH=/construction/biology/py-orange3-single-cell/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-orange3-single-cell XDG_CONFIG_HOME=/construction/biology/py-orange3-single-cell HOME=/construction/biology/py-orange3-single-cell TMPDIR="/tmp" PATH=/construction/biology/py-orange3-single-cell/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/py-orange3-single-cell/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/orange3-single-cell" EXAMPLESDIR="share/examples/orange3-single-cell" DATADIR="share/orange3-single-cell" WWWDIR="www/orange3-single-cell" ETCDIR="etc/orange3-single-cell" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/orange3-single-cell DOCSDIR=/usr/local/share/doc/orange3-single-cell EXAMPLESDIR=/usr/local/share/examples/orange3-single-cell WWWDIR=/usr/local/www/orange3-single-cell ETCDIR=/usr/local/etc/orange3-single-cell -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.2 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License AGPLv3+ accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-orange3-single-cell-0.8.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> py36-orange3-single-cell-0.8.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-orange3-single-cell-0.8.2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License AGPLv3+ accepted by the user ===> Fetching all distfiles required by py36-orange3-single-cell-0.8.2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License AGPLv3+ accepted by the user ===> Fetching all distfiles required by py36-orange3-single-cell-0.8.2 for building => SHA256 Checksum OK for biolab-orange3-single-cell-0.8.2_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License AGPLv3+ accepted by the user ===> Fetching all distfiles required by py36-orange3-single-cell-0.8.2 for building ===> Extracting for py36-orange3-single-cell-0.8.2 => SHA256 Checksum OK for biolab-orange3-single-cell-0.8.2_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-orange3-single-cell-0.8.2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-orange3-single-cell-0.8.2 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... `-- Installing gettext-runtime-0.19.8.1_2... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gettext-runtime-0.19.8.1_2: .......... done Extracting gmake-4.2.1_3: .......... done ===> py36-orange3-single-cell-0.8.2 depends on executable: gmake - found ===> Returning to build of py36-orange3-single-cell-0.8.2 ===> py36-orange3-single-cell-0.8.2 depends on package: py36-sphinx>0 - not found ===> Installing existing package /packages/All/py36-sphinx-1.6.5_1,1.txz Installing py36-sphinx-1.6.5_1,1... `-- Installing ca_root_nss-3.40... `-- Extracting ca_root_nss-3.40: ........ done `-- Installing py36-Babel-2.6.0... | `-- Installing py36-pytz-2018.7,1... | | `-- Installing py36-setuptools-40.4.3... | | `-- Installing python36-3.6.7... | | | `-- Installing expat-2.2.6_1... | | | `-- Extracting expat-2.2.6_1: .......... done | | | `-- Installing libffi-3.2.1_3... | | | `-- Extracting libffi-3.2.1_3: .......... done | | | `-- Installing libressl-2.8.2... | | | `-- Extracting libressl-2.8.2: .......... done | | | `-- Installing ncurses-6.1.20180728... | | | `-- Extracting ncurses-6.1.20180728: .......... done | | | `-- Installing readline-7.0.3_2... | | | `-- Extracting readline-7.0.3_2: .......... done | | `-- Extracting python36-3.6.7: .......... done | | `-- Extracting py36-setuptools-40.4.3: .......... done | `-- Extracting py36-pytz-2018.7,1: .......... done `-- Extracting py36-Babel-2.6.0: .......... done `-- Installing py36-Jinja2-2.10... | `-- Installing py36-MarkupSafe-1.0... | `-- Extracting py36-MarkupSafe-1.0: .......... done `-- Extracting py36-Jinja2-2.10: .......... done `-- Installing py36-alabaster-0.7.6... `-- Extracting py36-alabaster-0.7.6: .......... done `-- Installing py36-docutils-0.14_3... `-- Extracting py36-docutils-0.14_3: .......... done `-- Installing py36-imagesize-0.7.1... `-- Extracting py36-imagesize-0.7.1: .......... done `-- Installing py36-pygments-2.2.0... `-- Extracting py36-pygments-2.2.0: .......... done `-- Installing py36-requests-2.18.4_1... | `-- Installing py36-certifi-2018.4.16... | `-- Extracting py36-certifi-2018.4.16: .......... done | `-- Installing py36-chardet-3.0.4... | `-- Extracting py36-chardet-3.0.4: .......... done | `-- Installing py36-idna-2.7... | `-- Extracting py36-idna-2.7: .......... done | `-- Installing py36-urllib3-1.22,1... | | `-- Installing py36-cryptography-2.3... | | `-- Installing py36-asn1crypto-0.22.0... | | `-- Extracting py36-asn1crypto-0.22.0: .......... done | | `-- Installing py36-cffi-1.11.5... | | | `-- Installing py36-pycparser-2.18... | | | `-- Extracting py36-pycparser-2.18: .......... done | | `-- Extracting py36-cffi-1.11.5: .......... done | | `-- Installing py36-six-1.11.0... | | `-- Extracting py36-six-1.11.0: .......... done | | `-- Extracting py36-cryptography-2.3: .......... done | | `-- Installing py36-openssl-18.0.0... | | `-- Extracting py36-openssl-18.0.0: .......... done | | `-- Installing py36-pysocks-1.6.8... | | `-- Extracting py36-pysocks-1.6.8: .......... done | `-- Extracting py36-urllib3-1.22,1: .......... done `-- Extracting py36-requests-2.18.4_1: .......... done `-- Installing py36-snowballstemmer-1.2.0_1... | `-- Installing py36-pystemmer-1.3.0_2... | `-- Extracting py36-pystemmer-1.3.0_2: ......... done `-- Extracting py36-snowballstemmer-1.2.0_1: .......... done `-- Installing py36-sphinx_rtd_theme-0.4.0... `-- Extracting py36-sphinx_rtd_theme-0.4.0: .......... done `-- Installing py36-sphinxcontrib-websupport-1.0.1... `-- Extracting py36-sphinxcontrib-websupport-1.0.1: .......... done Extracting py36-sphinx-1.6.5_1,1: .......... done Message from ca_root_nss-3.40: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from python36-3.6.7: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-40.4.3: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* Message from py36-urllib3-1.22,1: Be careful, support of IPv6 is broken with PySocks 1.5.7. ===> py36-orange3-single-cell-0.8.2 depends on package: py36-sphinx>0 - found ===> Returning to build of py36-orange3-single-cell-0.8.2 ===> py36-orange3-single-cell-0.8.2 depends on package: py36-setuptools>0 - found ===> py36-orange3-single-cell-0.8.2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-orange3-single-cell-0.8.2 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-orange3-single-cell-0.8.2 gmake[1]: Entering directory '/construction/biology/py-orange3-single-cell/orange3-single-cell-0.8.2/doc' /usr/local/bin/sphinx-build-3.6 -b html -d build/doctrees . build/html Running Sphinx v1.6.5 making output directory... loading pickled environment... not yet created building [mo]: targets for 0 po files that are out of date building [html]: targets for 8 source files that are out of date updating environment: 8 added, 0 changed, 0 removed reading sources... [ 12%] index reading sources... [ 25%] widgets/filter reading sources... [ 37%] widgets/louvain reading sources... [ 50%] widgets/normalize reading sources... [ 62%] widgets/scorecells reading sources... [ 75%] widgets/scoregenes reading sources... [ 87%] widgets/singlecelldatasets reading sources... [100%] widgets/tsne looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 12%] index writing output... [ 25%] widgets/filter writing output... [ 37%] widgets/louvain writing output... [ 50%] widgets/normalize writing output... [ 62%] widgets/scorecells writing output... [ 75%] widgets/scoregenes writing output... [ 87%] widgets/singlecelldatasets writing output... [100%] widgets/tsne generating indices... genindex writing additional pages... search copying images... [ 10%] widgets/images/Filter-stamped.png copying images... [ 20%] widgets/images/Filter-Example.png copying images... [ 30%] widgets/images/LouvainClustering-stamped.png copying images... [ 40%] widgets/images/LouvainClustering-Example.png copying images... [ 50%] widgets/images/Normalize-stamped.png copying images... [ 60%] widgets/images/ScoreCells-stamped.png copying images... [ 70%] widgets/images/tSNE-Example.png copying images... [ 80%] widgets/images/ScoreGenes-stamped.png copying images... [ 90%] widgets/images/SingleCellDatasets-stamped.png copying images... [100%] widgets/images/tSNE-stamped.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded. Build finished. The HTML pages are in build/html. /usr/local/bin/sphinx-build-3.6 -b htmlhelp -d build/doctrees . build/htmlhelp Running Sphinx v1.6.5 making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [htmlhelp]: targets for 8 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found preparing documents... done writing output... [ 12%] index writing output... [ 25%] widgets/filter writing output... [ 37%] widgets/louvain writing output... [ 50%] widgets/normalize writing output... [ 62%] widgets/scorecells writing output... [ 75%] widgets/scoregenes writing output... [ 87%] widgets/singlecelldatasets writing output... [100%] widgets/tsne generating indices... genindex writing additional pages... copying images... [ 10%] widgets/images/Filter-stamped.png copying images... [ 20%] widgets/images/Filter-Example.png copying images... [ 30%] widgets/images/LouvainClustering-stamped.png copying images... [ 40%] widgets/images/LouvainClustering-Example.png copying images... [ 50%] widgets/images/Normalize-stamped.png copying images... [ 60%] widgets/images/ScoreCells-stamped.png copying images... [ 70%] widgets/images/tSNE-Example.png copying images... [ 80%] widgets/images/ScoreGenes-stamped.png copying images... [ 90%] widgets/images/SingleCellDatasets-stamped.png copying images... [100%] widgets/images/tSNE-stamped.png copying static files... done copying extra files... done dumping stopword list... writing project file... writing TOC file... writing index file... build succeeded. Build finished; now you can run HTML Help Workshop with the .hhp project file in build/htmlhelp. gmake[1]: Leaving directory '/construction/biology/py-orange3-single-cell/orange3-single-cell-0.8.2/doc' running build running build_py creating build creating build/lib creating build/lib/orangecontrib copying orangecontrib/__init__.py -> build/lib/orangecontrib creating build/lib/orangecontrib/single_cell copying orangecontrib/single_cell/__main__.py -> build/lib/orangecontrib/single_cell copying orangecontrib/single_cell/reader.py -> build/lib/orangecontrib/single_cell copying orangecontrib/single_cell/__init__.py -> build/lib/orangecontrib/single_cell creating build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/iconview.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/welcome.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/update_check.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/splash.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/__init__.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/config.py -> build/lib/orangecontrib/single_cell/launcher creating build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/__init__.py -> build/lib/orangecontrib/single_cell/tutorials creating build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/alignment.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/biweight.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/cca.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/scpreprocess.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/clusteranalysis.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/__init__.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/scbnorm.py -> build/lib/orangecontrib/single_cell/preprocess creating build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/contingency_table.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owdotmatrix.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscorecells.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owloaddata.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owtsne.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owmultisample.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owbatchnorm.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/load_data.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscdatasets.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owfilter.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owaligndatasets.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscpreprocess.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscoregenes.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/__init__.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owmarkergenes.py -> build/lib/orangecontrib/single_cell/widgets creating build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/owscorecells.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owmultisample.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owdatasets.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owscpreprocess.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/__init__.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owaligndatasets.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owloaddata.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_load_data.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owfilter.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owmarkergenes.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owgenerank.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owscoregenes.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owbatchnorm.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owtsne.py -> build/lib/orangecontrib/single_cell/tests creating build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_scpreprocess.py -> build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_cca.py -> build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_scbnorm.py -> build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/__init__.py -> build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_alignment.py -> build/lib/orangecontrib/single_cell/tests/preprocess running egg_info creating Orange3_SingleCell.egg-info writing Orange3_SingleCell.egg-info/PKG-INFO writing dependency_links to Orange3_SingleCell.egg-info/dependency_links.txt writing entry points to Orange3_SingleCell.egg-info/entry_points.txt writing namespace_packages to Orange3_SingleCell.egg-info/namespace_packages.txt writing requirements to Orange3_SingleCell.egg-info/requires.txt writing top-level names to Orange3_SingleCell.egg-info/top_level.txt writing manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' reading manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.tab.gz' under directory 'orangecontrib/single_cell/tutorials' warning: no files found matching '*.tab' under directory 'orangecontrib/single_cell/tutorials' writing manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' creating build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Biomarkers.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/BiomarkersColor.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/CellTypeDiscovery.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/CellTypeDiscoveryColor.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/PopulationPrediction.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/PopulationPredictionColor.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Templates.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Welcome.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/getting-started-video-tutorials.png -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/splash.png -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/welcome-background.png -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/020-Showcase-Markers.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/030-Showcase-Clustering.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/040-Showcase-RegrBatchEffects.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/050-Showcase-DatasetAlignment.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/053-Showcase-DataSetPreprocessingAlignment.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/060-Showcase-StagePrediction.ows -> build/lib/orangecontrib/single_cell/tutorials creating build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data creating build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/barcodes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/genes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/matrix.mtx -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A creating build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/barcodes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/genes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/matrix.mtx -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B creating build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/barcodes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/genes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/matrix.mtx -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C creating build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/AlignDatasets.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/BatchEffectRemoval.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Binarize.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/DotMatrix.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Filter.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/LoadData.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/LogarithmicScale.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/MarkerGenes.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/MultiSample.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Normalize.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Rank.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/ScoreCells.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/ScoreGenes.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SelectGenes.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SingleCellDatasets.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SingleCellPreprocess.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Standardize.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/TSNE.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/VCFFile.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/category.svg -> build/lib/orangecontrib/single_cell/widgets/icons creating build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/DATA_MATRIX_LOG_TPM.txt -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.loom -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.pkl -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.txt.gz -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.xlsx -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/lib.cell.count -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/lib.cell.meta -> build/lib/orangecontrib/single_cell/tests/data creating build/lib/orangecontrib/single_cell/tests/data/10x creating build/lib/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/barcodes.tsv -> build/lib/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/genes.tsv -> build/lib/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/matrix.mtx -> build/lib/orangecontrib/single_cell/tests/data/10x/hg19 creating build/lib/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/barcodes.tsv -> build/lib/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/genes.tsv -> build/lib/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/matrix.mtx -> build/lib/orangecontrib/single_cell/tests/data/10x/mm10 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-orange3-single-cell-0.8.2 depends on package: orange3>0 - not found ===> Installing existing package /packages/All/orange3-3.17.0.txz Installing orange3-3.17.0... `-- Installing py36-AnyQt-0.0.10... `-- Extracting py36-AnyQt-0.0.10: .......... done `-- Installing py36-PyOpenGL-3.1.0_2... | `-- Installing freeglut-3.0.0_2... | | `-- Installing libGLU-9.0.0_3... | | `-- Installing mesa-libs-18.1.9_4... | | | `-- Installing libX11-1.6.6_1,1... | | | `-- Installing libXau-1.0.8_5... | | | `-- Extracting libXau-1.0.8_5: .......... done | | | `-- Installing libXdmcp-1.1.2_2... | | | | `-- Installing xorgproto-2018.4... | | | | `-- Extracting xorgproto-2018.4: .......... done | | | `-- Extracting libXdmcp-1.1.2_2: ......... done | | | `-- Installing libxcb-1.13.1... | | | | `-- Installing libpthread-stubs-0.4... | | | | `-- Extracting libpthread-stubs-0.4: .... done | | | | `-- Installing libxml2-2.9.7... | | | | `-- Extracting libxml2-2.9.7: .......... done | | | `-- Extracting libxcb-1.13.1: .......... done | | | `-- Extracting libX11-1.6.6_1,1: .......... done | | | `-- Installing libXdamage-1.1.4_5... | | | `-- Installing libXfixes-5.0.3_2... | | | `-- Extracting libXfixes-5.0.3_2: .......... done | | | `-- Extracting libXdamage-1.1.4_5: ......... done | | | `-- Installing libXext-1.3.3_3,1... | | | `-- Extracting libXext-1.3.3_3,1: .......... done | | | `-- Installing libXxf86vm-1.1.4_3... | | | `-- Extracting libXxf86vm-1.1.4_3: .......... done | | | `-- Installing libdrm-2.4.93,1... | | | `-- Installing libpciaccess-0.13.5... | | | | `-- Installing pciids-20181113... | | | | `-- Extracting pciids-20181113: ..... done | | | `-- Extracting libpciaccess-0.13.5: ......... done | | | `-- Extracting libdrm-2.4.93,1: .......... done | | | `-- Installing libelf-0.8.13_3... | | | `-- Extracting libelf-0.8.13_3: .......... done | | | `-- Installing libxshmfence-1.2_4... | | | `-- Extracting libxshmfence-1.2_4: ......... done | | | `-- Installing wayland-1.16.0... | | | `-- Extracting wayland-1.16.0: .......... done | | `-- Extracting mesa-libs-18.1.9_4: .......... done | | `-- Extracting libGLU-9.0.0_3: ...... done | | `-- Installing libICE-1.0.9_3,1... | | `-- Extracting libICE-1.0.9_3,1: .......... done | | `-- Installing libXi-1.7.9_2,1... | | `-- Extracting libXi-1.7.9_2,1: .......... done | | `-- Installing libXrandr-1.5.1_2... | | `-- Installing libXrender-0.9.10_2... | | `-- Extracting libXrender-0.9.10_2: .......... done | | `-- Extracting libXrandr-1.5.1_2: .......... done | `-- Extracting freeglut-3.0.0_2: .......... done | `-- Installing py36-numpy-1.15.1,1... | | `-- Installing gcc5-5.5.0_6... | | `-- Installing binutils-2.30_6,1... | | `-- Extracting binutils-2.30_6,1: .......... done | | `-- Installing gmp-6.1.2_1... | | `-- Extracting gmp-6.1.2_1: .......... done | | `-- Installing mpc-1.1.0_2... | | | `-- Installing mpfr-4.0.1_2... | | | `-- Extracting mpfr-4.0.1_2: .......... done | | `-- Extracting mpc-1.1.0_2: ......... done | | `-- Extracting gcc5-5.5.0_6: .......... done | | `-- Installing openblas-0.2.20_3,1... | | `-- Extracting openblas-0.2.20_3,1: ......... done | | `-- Installing suitesparse-5.2.0_1... | | `-- Installing lapack-3.5.0_5... | | | `-- Installing blas-3.5.0_4... | | | `-- Extracting blas-3.5.0_4: ....... done | | `-- Extracting lapack-3.5.0_5: .......... done | | `-- Installing metis-5.1.0_5... | | `-- Extracting metis-5.1.0_5: .......... done | | `-- Extracting suitesparse-5.2.0_1: .......... done | `-- Extracting py36-numpy-1.15.1,1: .......... done | `-- Installing py36-pillow-5.2.0... | | `-- Installing freetype2-2.9.1... | | `-- Extracting freetype2-2.9.1: .......... done | | `-- Installing jpeg-turbo-2.0.0... | | `-- Extracting jpeg-turbo-2.0.0: .......... done | | `-- Installing openjpeg-2.3.0_2... | | `-- Installing lcms2-2.9... | | | `-- Installing tiff-4.0.10... | | | `-- Installing jbigkit-2.1_1... | | | `-- Extracting jbigkit-2.1_1: .......... done | | | `-- Extracting tiff-4.0.10: .......... done | | `-- Extracting lcms2-2.9: .......... done | | `-- Installing png-1.6.35... | | `-- Extracting png-1.6.35: .......... done | | `-- Extracting openjpeg-2.3.0_2: .......... done | | `-- Installing py36-tkinter-3.6.7_6... | | `-- Installing tcl86-8.6.9... | | `-- Extracting tcl86-8.6.9: .......... done | | `-- Installing tk86-8.6.9... | | | `-- Installing fontconfig-2.12.6,1... | | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | | `-- Installing libXScrnSaver-1.2.3_2... | | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done | | | `-- Installing libXft-2.3.2_3... | | | `-- Extracting libXft-2.3.2_3: .......... done | | `-- Extracting tk86-8.6.9: .......... done | | `-- Extracting py36-tkinter-3.6.7_6: ........ done | | `-- Installing webp-1.0.1... | | `-- Installing giflib-5.1.4... | | `-- Extracting giflib-5.1.4: .......... done | | `-- Extracting webp-1.0.1: .......... done | `-- Extracting py36-pillow-5.2.0: .......... done `-- Extracting py36-PyOpenGL-3.1.0_2: .......... done `-- Installing py36-bottleneck-1.2.1_3... `-- Extracting py36-bottleneck-1.2.1_3: .......... done `-- Installing py36-joblib-0.13.0... `-- Extracting py36-joblib-0.13.0: .......... done `-- Installing py36-keyring-12.0.1... | `-- Installing py36-SecretStorage-2.3.1... | | `-- Installing py36-dbus-1.2.8... | | `-- Installing dbus-glib-0.108... | | | `-- Installing dbus-1.10.16_1... | | | `-- Installing libSM-1.2.3,1... | | | `-- Extracting libSM-1.2.3,1: .......... done ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | | `-- Extracting dbus-1.10.16_1: ......... done | | | `-- Installing glib-2.56.3_1,1... | | | `-- Installing libiconv-1.14_11... | | | `-- Extracting libiconv-1.14_11: .......... done | | | `-- Installing pcre-8.42... | | | `-- Extracting pcre-8.42: .......... done | | | `-- Installing python27-2.7.15... | | | `-- Extracting python27-2.7.15: .......... done | | | `-- Extracting glib-2.56.3_1,1: .......... done No schema files found: doing nothing. | | `-- Extracting dbus-glib-0.108: .......... done | | `-- Installing pydbus-common-1.2.8... | | `-- Extracting pydbus-common-1.2.8: .......... done | | `-- Extracting py36-dbus-1.2.8: .......... done | `-- Extracting py36-SecretStorage-2.3.1: .......... done | `-- Installing py36-entrypoints-0.2.3... | `-- Extracting py36-entrypoints-0.2.3: .......... done | `-- Installing py36-keyrings.alt-3.0... | `-- Extracting py36-keyrings.alt-3.0: .......... done `-- Extracting py36-keyring-12.0.1: .......... done `-- Installing py36-networkx-2.1... | `-- Installing py36-decorator-4.3.0... | `-- Extracting py36-decorator-4.3.0: .......... done | `-- Installing py36-matplotlib-2.1.2_3... | | `-- Installing py36-cycler-0.10.0... | | `-- Extracting py36-cycler-0.10.0: .......... done | | `-- Installing py36-dateutil-2.7.3... | | `-- Extracting py36-dateutil-2.7.3: .......... done | | `-- Installing py36-pyparsing-2.3.0... | | `-- Extracting py36-pyparsing-2.3.0: .......... done | | `-- Installing py36-tornado-5.1.1... | | `-- Extracting py36-tornado-5.1.1: .......... done | `-- Extracting py36-matplotlib-2.1.2_3: .......... done | `-- Installing py36-pygraphviz-1.3.1... | | `-- Installing graphviz-2.40.1_6... | | `-- Installing cairo-1.15.12,2... | | | `-- Installing pixman-0.34.0... | | | `-- Extracting pixman-0.34.0: .......... done | | | `-- Installing xcb-util-renderutil-0.3.9_1... | | | `-- Installing xcb-util-0.4.0_2,1... | | | `-- Extracting xcb-util-0.4.0_2,1: .......... done | | | `-- Extracting xcb-util-renderutil-0.3.9_1: ......... done | | `-- Extracting cairo-1.15.12,2: .......... done | | `-- Installing libXaw-1.0.13_2,2... | | | `-- Installing libXmu-1.1.2_5,1... | | | `-- Installing libXt-1.1.5_2,1... | | | `-- Extracting libXt-1.1.5_2,1: .......... done | | | `-- Extracting libXmu-1.1.2_5,1: .......... done | | | `-- Installing libXp-1.0.3_2,1... | | | `-- Extracting libXp-1.0.3_2,1: .......... done | | | `-- Installing libXpm-3.5.12_2... | | | `-- Extracting libXpm-3.5.12_2: .......... done | | `-- Extracting libXaw-1.0.13_2,2: .......... done | | `-- Installing libgd-2.2.5,1... | | `-- Extracting libgd-2.2.5,1: .......... done | | `-- Installing libltdl-2.4.6... | | `-- Extracting libltdl-2.4.6: .......... done | | `-- Installing pango-1.42.4... | | | `-- Installing encodings-1.0.4_4,1... | | | `-- Installing font-util-1.3.1... | | | `-- Extracting font-util-1.3.1: .......... done | | | `-- Extracting encodings-1.0.4_4,1: .......... done | | | `-- Installing fribidi-0.19.7... | | | `-- Extracting fribidi-0.19.7: .......... done | | | `-- Installing harfbuzz-2.1.3... | | | `-- Installing graphite2-1.3.12... | | | `-- Extracting graphite2-1.3.12: .......... done | | | `-- Extracting harfbuzz-2.1.3: .......... done | | | `-- Installing xorg-fonts-truetype-7.7_1... | | | `-- Installing dejavu-2.37... | | | | `-- Installing mkfontdir-1.0.7... | | | | `-- Installing mkfontscale-1.1.3_2... | | | | | `-- Installing libfontenc-1.1.3_3... | | | | | `-- Extracting libfontenc-1.1.3_3: ......... done | | | | `-- Extracting mkfontscale-1.1.3_2: ..... done | | | | `-- Extracting mkfontdir-1.0.7: ..... done | | | `-- Extracting dejavu-2.37: .......... done | | | `-- Installing font-bh-ttf-1.0.3_3... | | | `-- Extracting font-bh-ttf-1.0.3_3: .......... done | | | `-- Installing font-misc-ethiopic-1.0.3_3... | | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done | | | `-- Installing font-misc-meltho-1.0.3_3... | | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done | | `-- Extracting pango-1.42.4: .......... done | | `-- Extracting graphviz-2.40.1_6: .......... done | `-- Extracting py36-pygraphviz-1.3.1: .......... done | `-- Installing py36-scikit-sparse-0.4.4... | | `-- Installing py36-scipy-1.1.0_1... | | `-- Extracting py36-scipy-1.1.0_1: .......... done | `-- Extracting py36-scikit-sparse-0.4.4: .......... done | `-- Installing py36-yaml-3.13... | `-- Extracting py36-yaml-3.13: .......... done `-- Extracting py36-networkx-2.1: .......... done `-- Installing py36-pyqtgraph-0.10.0... `-- Extracting py36-pyqtgraph-0.10.0: .......... done `-- Installing py36-python-louvain-0.11... `-- Extracting py36-python-louvain-0.11: .......... done `-- Installing py36-qt5-core-5.9.2_6... | `-- Installing qscintilla2-qt5-2.10.4... | | `-- Installing qt5-core-5.11.2_1... | | `-- Installing icu-63.1,1... | | `-- Extracting icu-63.1,1: .......... done | | `-- Installing pcre2-10.31... | | `-- Extracting pcre2-10.31: .......... done | | `-- Installing qtchooser-66... | | `-- Extracting qtchooser-66: .......... done | | `-- Extracting qt5-core-5.11.2_1: .......... done | | `-- Installing qt5-gui-5.11.2... | | `-- Installing libxkbcommon-0.8.0... | | `-- Extracting libxkbcommon-0.8.0: .......... done | | `-- Installing qt5-dbus-5.11.2... | | `-- Extracting qt5-dbus-5.11.2: .......... done | | `-- Installing qt5-network-5.11.2... | | `-- Extracting qt5-network-5.11.2: .......... done | | `-- Installing xcb-util-image-0.4.0_1... | | `-- Extracting xcb-util-image-0.4.0_1: ........ done | | `-- Installing xcb-util-keysyms-0.4.0_1... | | `-- Extracting xcb-util-keysyms-0.4.0_1: ...... done | | `-- Installing xcb-util-wm-0.4.1_3... | | `-- Extracting xcb-util-wm-0.4.1_3: .......... done | | `-- Installing xdg-utils-1.1.1... | | | `-- Installing hicolor-icon-theme-0.15... | | | `-- Extracting hicolor-icon-theme-0.15: . done | | | `-- Installing xprop-1.2.3... | | | `-- Extracting xprop-1.2.3: .. done | | | `-- Installing xset-1.2.4_2... | | | `-- Installing libXfontcache-1.0.5_5... | | | `-- Extracting libXfontcache-1.0.5_5: .......... done | | | `-- Extracting xset-1.2.4_2: .. done | | `-- Extracting xdg-utils-1.1.1: .......... done | | `-- Extracting qt5-gui-5.11.2: .......... done | | `-- Installing qt5-printsupport-5.11.2... | | `-- Installing cups-2.2.8_1... | | | `-- Installing avahi-app-0.7_2... | | | `-- Installing gdbm-1.18.1... | | | `-- Extracting gdbm-1.18.1: .......... done | | | `-- Installing gnome_subr-1.0... | | | `-- Extracting gnome_subr-1.0: .... done | | | `-- Installing gobject-introspection-1.56.1,1... | | | `-- Extracting gobject-introspection-1.56.1,1: .......... done | | | `-- Installing libdaemon-0.14_1... | | | `-- Extracting libdaemon-0.14_1: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | | | `-- Extracting avahi-app-0.7_2: .......... done | | | `-- Installing gnutls-3.5.19_1... | | | `-- Installing libidn2-2.0.5_1... | | | | `-- Installing libunistring-0.9.10_1... | | | | `-- Extracting libunistring-0.9.10_1: .......... done | | | `-- Extracting libidn2-2.0.5_1: .......... done | | | `-- Installing libtasn1-4.13_1... | | | `-- Extracting libtasn1-4.13_1: .......... done | | | `-- Installing nettle-3.4_1... | | | `-- Extracting nettle-3.4_1: .......... done | | | `-- Installing p11-kit-0.23.14... | | | `-- Extracting p11-kit-0.23.14: .......... done | | | `-- Installing trousers-0.3.14_2... | | | | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting trousers-0.3.14_2: .......... done | | | `-- Extracting gnutls-3.5.19_1: .......... done | | | `-- Installing libpaper-1.1.24.4... | | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | | `-- Extracting cups-2.2.8_1: .......... done | | `-- Installing qt5-widgets-5.11.2... | | `-- Extracting qt5-widgets-5.11.2: .......... done | | `-- Extracting qt5-printsupport-5.11.2: .......... done | `-- Extracting qscintilla2-qt5-2.10.4: .......... done `-- Extracting py36-qt5-core-5.9.2_6: .......... done `-- Installing py36-qt5-gui-5.9.2_2... | `-- Installing qt5-imageformats-5.11.2... | | `-- Installing jasper-1.900.1_17... | | `-- Extracting jasper-1.900.1_17: .......... done | | `-- Installing libmng-1.0.10_3... | | `-- Installing lcms-1.19_6,1... | | `-- Extracting lcms-1.19_6,1: .......... done | | `-- Extracting libmng-1.0.10_3: ......... done | `-- Extracting qt5-imageformats-5.11.2: .......... done `-- Extracting py36-qt5-gui-5.9.2_2: .......... done `-- Installing py36-qt5-printsupport-5.9.2_5... | `-- Installing py36-qt5-widgets-5.9.2_5... | `-- Extracting py36-qt5-widgets-5.9.2_5: .......... done `-- Extracting py36-qt5-printsupport-5.9.2_5: .......... done `-- Installing py36-qt5-webengine-5.9.2_5... | `-- Installing py36-qt5-network-5.9.2_5... | `-- Extracting py36-qt5-network-5.9.2_5: .......... done | `-- Installing py36-qt5-webchannel-5.9.2_4... | | `-- Installing py36-qt5-qml-5.9.2_5... | | `-- Installing qt5-declarative-5.11.2_1... | | | `-- Installing qt5-sql-5.11.2... | | | `-- Extracting qt5-sql-5.11.2: .......... done | | | `-- Installing qt5-testlib-5.11.2... | | | `-- Extracting qt5-testlib-5.11.2: .......... done | | | `-- Installing qt5-xmlpatterns-5.11.2... | | | `-- Extracting qt5-xmlpatterns-5.11.2: .......... done | | `-- Extracting qt5-declarative-5.11.2_1: .......... done | | `-- Extracting py36-qt5-qml-5.9.2_5: .......... done | | `-- Installing qt5-webchannel-5.11.2_1... | | `-- Extracting qt5-webchannel-5.11.2_1: .......... done | `-- Extracting py36-qt5-webchannel-5.9.2_4: ........ done | `-- Installing qt5-location-5.11.2_1... | | `-- Installing qt5-concurrent-5.11.2... | | `-- Extracting qt5-concurrent-5.11.2: .......... done | `-- Extracting qt5-location-5.11.2_1: .......... done | `-- Installing qt5-webengine-5.9.5_10... | | `-- Installing alsa-lib-1.1.2_2... | | `-- Extracting alsa-lib-1.1.2_2: .......... done | | `-- Installing ffmpeg-4.1,1... | | `-- Installing libtheora-1.1.1_7... | | | `-- Installing libogg-1.3.3,4... | | | `-- Extracting libogg-1.3.3,4: .......... done | | | `-- Installing libvorbis-1.3.6,3... | | | `-- Extracting libvorbis-1.3.6,3: .......... done | | `-- Extracting libtheora-1.1.1_7: .......... done | | `-- Installing libv4l-1.6.3_4... | | `-- Extracting libv4l-1.6.3_4: .......... done | | `-- Installing libva-2.3.0_1... | | | `-- Installing v4l_compat-1.6.3_2... | | | `-- Extracting v4l_compat-1.6.3_2: .......... done | | `-- Extracting libva-2.3.0_1: .......... done | | `-- Installing libvdpau-1.1.1_2... | | `-- Extracting libvdpau-1.1.1_2: .......... done | | `-- Installing libvpx-1.7.0_2... | | `-- Extracting libvpx-1.7.0_2: .......... done | | `-- Installing libx264-0.155.2917... | | `-- Extracting libx264-0.155.2917: ......... done | | `-- Installing opencv-core-3.4.1_10... | | `-- Extracting opencv-core-3.4.1_10: .......... done | | `-- Installing opus-1.3... | | `-- Extracting opus-1.3: .......... done | | `-- Installing x265-2.8_1... | | `-- Extracting x265-2.8_1: .......... done | | `-- Installing xvid-1.3.5,1... | | `-- Extracting xvid-1.3.5,1: ........ done | | `-- Extracting ffmpeg-4.1,1: .......... done | | `-- Installing jsoncpp-1.8.1_4... | | `-- Extracting jsoncpp-1.8.1_4: .......... done | | `-- Installing libXcomposite-0.4.4_5,1... | | `-- Extracting libXcomposite-0.4.4_5,1: .......... done | | `-- Installing libXcursor-1.1.15_2... | | `-- Extracting libXcursor-1.1.15_2: .......... done | | `-- Installing libXtst-1.2.3_2... | | `-- Extracting libXtst-1.2.3_2: .......... done | | `-- Installing libevent-2.1.8_2... | | `-- Extracting libevent-2.1.8_2: .......... done | | `-- Installing libpci-3.6.2... | | `-- Extracting libpci-3.6.2: .......... done | | `-- Installing libsrtp-1.6.0_1... | | `-- Extracting libsrtp-1.6.0_1: .......... done | | `-- Installing libxslt-1.1.32... | | `-- Installing libgcrypt-1.8.4_1... | | | `-- Installing libgpg-error-1.32_1... | | | `-- Extracting libgpg-error-1.32_1: .......... done | | `-- Extracting libgcrypt-1.8.4_1: .......... done | | `-- Extracting libxslt-1.1.32: .......... done | | `-- Installing nspr-4.20... | | `-- Extracting nspr-4.20: .......... done | | `-- Installing nss-3.40... | | `-- Installing sqlite3-3.25.1_1... | | `-- Extracting sqlite3-3.25.1_1: .......... done | | `-- Extracting nss-3.40: .......... done | | `-- Installing qt5-designer-5.11.2_1... | | `-- Installing qt5-assistant-5.11.2... | | | `-- Installing qt5-help-5.11.2... | | | `-- Installing qt5-sqldrivers-sqlite3-5.11.2... | | | `-- Extracting qt5-sqldrivers-sqlite3-5.11.2: ..... done | | | `-- Extracting qt5-help-5.11.2: .......... done | | `-- Extracting qt5-assistant-5.11.2: ...... done | | `-- Installing qt5-uiplugin-5.11.2... | | `-- Extracting qt5-uiplugin-5.11.2: .......... done | | `-- Installing qt5-xml-5.11.2... | | `-- Extracting qt5-xml-5.11.2: .......... done | | `-- Extracting qt5-designer-5.11.2_1: .......... done | | `-- Installing re2-20180901... | | `-- Extracting re2-20180901: .......... done | | `-- Installing snappy-1.1.6... | | `-- Extracting snappy-1.1.6: .......... done | `-- Extracting qt5-webengine-5.9.5_10: .......... done `-- Extracting py36-qt5-webengine-5.9.2_5: .......... done `-- Installing py36-scikit-learn-0.19.2... `-- Extracting py36-scikit-learn-0.19.2: .......... done `-- Installing py36-serverfiles-0.2.1... `-- Extracting py36-serverfiles-0.2.1: .......... done `-- Installing py36-xlrd-1.0.0... `-- Extracting py36-xlrd-1.0.0: .......... done Extracting orange3-3.17.0: .......... done Message from freeglut-3.0.0_2: Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. Message from gcc5-5.5.0_6: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 7 or newer instead.. Message from metis-5.1.0_5: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from qtchooser-66: qtchooser is a wrapper that allows selecting whether Qt4 or Qt5 binaries for qmake, moc and other tools will be run when invoking the binaries in $PATH. By default, the Qt5 versions are run. It is possible to change the behavior by setting the QT_SELECT environment variable to "qt4". See qtchooser(1) for more information. Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from qt5-sql-5.11.2: ====================================================================== To enable Qt database support, install the database plugin ports. The following plugin ports are available: - databases/qt5-sqldrivers-ibase InterBase/Firebird - databases/qt5-sqldrivers-mysql MySQL - databases/qt5-sqldrivers-odbc Open Database Connectivity - databases/qt5-sqldrivers-pgsql PostgreSQL - databases/qt5-sqldrivers-sqlite2 SQLite 2 - databases/qt5-sqldrivers-sqlite3 SQLite 3 - databases/qt5-sqldrivers-tds FreeTDS ====================================================================== Message from opencv-core-3.4.1_10: ===> NOTICE: The opencv-core port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-orange3-single-cell-0.8.2 depends on package: orange3>0 - found ===> Returning to build of py36-orange3-single-cell-0.8.2 ===> py36-orange3-single-cell-0.8.2 depends on package: py36-orange3-bioinformatics>0 - not found ===> Installing existing package /packages/All/py36-orange3-bioinformatics-3.2.2.txz Installing py36-orange3-bioinformatics-3.2.2... `-- Installing py36-Genesis-PyAPI-1.2.1... | `-- Installing py36-slumber-0.7.1... | `-- Extracting py36-slumber-0.7.1: .......... done `-- Extracting py36-Genesis-PyAPI-1.2.1: .......... done `-- Installing py36-requests-cache-0.4.13... `-- Extracting py36-requests-cache-0.4.13: .......... done Extracting py36-orange3-bioinformatics-3.2.2: .......... done ===> py36-orange3-single-cell-0.8.2 depends on package: py36-orange3-bioinformatics>0 - found ===> Returning to build of py36-orange3-single-cell-0.8.2 ===> py36-orange3-single-cell-0.8.2 depends on package: py36-astropy>0 - not found ===> Installing existing package /packages/All/py36-astropy-1.1.2_1.txz Installing py36-astropy-1.1.2_1... Extracting py36-astropy-1.1.2_1: .......... done ===> py36-orange3-single-cell-0.8.2 depends on package: py36-astropy>0 - found ===> Returning to build of py36-orange3-single-cell-0.8.2 ===> py36-orange3-single-cell-0.8.2 depends on package: py36-fastdtw>0 - not found ===> Installing existing package /packages/All/py36-fastdtw-0.3.2.txz Installing py36-fastdtw-0.3.2... Extracting py36-fastdtw-0.3.2: .......... done ===> py36-orange3-single-cell-0.8.2 depends on package: py36-fastdtw>0 - found ===> Returning to build of py36-orange3-single-cell-0.8.2 ===> py36-orange3-single-cell-0.8.2 depends on package: py36-joblib>=0.11 - found ===> py36-orange3-single-cell-0.8.2 depends on package: py36-loompy>=2.0.10 - not found ===> Installing existing package /packages/All/py36-loompy-2.0.16.txz Installing py36-loompy-2.0.16... `-- Installing py36-h5py-2.8.0_1... | `-- Installing hdf5-1.10.1_2... | | `-- Installing hdf-szip-2.1_2... | | `-- Extracting hdf-szip-2.1_2: .......... done | `-- Extracting hdf5-1.10.1_2: .......... done `-- Extracting py36-h5py-2.8.0_1: .......... done `-- Installing py36-pandas-0.23.4... | `-- Installing py36-numexpr-2.6.8... | `-- Extracting py36-numexpr-2.6.8: .......... done | `-- Installing py36-sqlite3-3.6.7_7... | `-- Extracting py36-sqlite3-3.6.7_7: ........ done `-- Extracting py36-pandas-0.23.4: .......... done Extracting py36-loompy-2.0.16: .......... done Message from py36-pandas-0.23.4: === Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. === ===> py36-orange3-single-cell-0.8.2 depends on package: py36-loompy>=2.0.10 - found ===> Returning to build of py36-orange3-single-cell-0.8.2 ===> py36-orange3-single-cell-0.8.2 depends on package: py36-networkx>0 - found ===> py36-orange3-single-cell-0.8.2 depends on package: py36-pandas>=0.23 - found ===> py36-orange3-single-cell-0.8.2 depends on package: py36-scikit-learn>0 - found ===> py36-orange3-single-cell-0.8.2 depends on package: py36-numpy>0 - found ===> py36-orange3-single-cell-0.8.2 depends on package: py36-setuptools>0 - found ===> py36-orange3-single-cell-0.8.2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-orange3-single-cell-0.8.2 ===> Generating temporary packing list running install running build running build_py running egg_info writing Orange3_SingleCell.egg-info/PKG-INFO writing dependency_links to Orange3_SingleCell.egg-info/dependency_links.txt writing entry points to Orange3_SingleCell.egg-info/entry_points.txt writing namespace_packages to Orange3_SingleCell.egg-info/namespace_packages.txt writing requirements to Orange3_SingleCell.egg-info/requires.txt writing top-level names to Orange3_SingleCell.egg-info/top_level.txt reading manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.tab.gz' under directory 'orangecontrib/single_cell/tutorials' warning: no files found matching '*.tab' under directory 'orangecontrib/single_cell/tutorials' writing manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' running install_lib Skipping installation of /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/__init__.py (namespace package) copying orangecontrib/single_cell/reader.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell copying orangecontrib/single_cell/__init__.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell copying orangecontrib/single_cell/__main__.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell copying orangecontrib/single_cell/preprocess/scbnorm.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/biweight.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/scpreprocess.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/__init__.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/clusteranalysis.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/cca.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/alignment.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/tests/test_owscpreprocess.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owloaddata.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owbatchnorm.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owaligndatasets.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owdatasets.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owfilter.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owscoregenes.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owmultisample.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_load_data.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owtsne.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owmarkergenes.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owgenerank.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/__init__.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/owscorecells.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/preprocess/test_scbnorm.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_cca.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_scpreprocess.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_alignment.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/__init__.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/data/data.loom -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.pkl -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.txt.gz -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.xlsx -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/lib.cell.count -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/lib.cell.meta -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/DATA_MATRIX_LOG_TPM.txt -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/10x/hg19/genes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/matrix.mtx -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/barcodes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/mm10/matrix.mtx -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/barcodes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/genes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/widgets/owfilter.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/contingency_table.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/load_data.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owaligndatasets.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owdotmatrix.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/__init__.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owmarkergenes.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscpreprocess.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owloaddata.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscoregenes.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscdatasets.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owbatchnorm.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscorecells.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owmultisample.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owtsne.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/icons/category.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/ScoreGenes.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Filter.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/ScoreCells.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Standardize.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/AlignDatasets.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/TSNE.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Rank.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/LoadData.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/MarkerGenes.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/VCFFile.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/BatchEffectRemoval.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/LogarithmicScale.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SelectGenes.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SingleCellPreprocess.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/MultiSample.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/DotMatrix.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Binarize.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SingleCellDatasets.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Normalize.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/launcher/update_check.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/splash.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/welcome.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/iconview.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/config.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/__init__.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/icons/CellTypeDiscovery.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/CellTypeDiscoveryColor.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/PopulationPrediction.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/splash.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Welcome.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Biomarkers.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/BiomarkersColor.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/getting-started-video-tutorials.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Templates.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/welcome-background.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/PopulationPredictionColor.svg -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/tutorials/040-Showcase-RegrBatchEffects.ows -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/050-Showcase-DatasetAlignment.ows -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/053-Showcase-DataSetPreprocessingAlignment.ows -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/020-Showcase-Markers.ows -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/030-Showcase-Clustering.ows -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/060-Showcase-StagePrediction.ows -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/__init__.py -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM.ows -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/barcodes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/genes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/matrix.mtx -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/matrix.mtx -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/genes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/barcodes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/barcodes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/genes.tsv -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/matrix.mtx -> /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/reader.py to reader.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/__main__.py to __main__.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess/scbnorm.py to scbnorm.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess/biweight.py to biweight.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess/scpreprocess.py to scpreprocess.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess/clusteranalysis.py to clusteranalysis.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess/cca.py to cca.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/preprocess/alignment.py to alignment.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owscpreprocess.py to test_owscpreprocess.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owloaddata.py to test_owloaddata.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owbatchnorm.py to test_owbatchnorm.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owaligndatasets.py to test_owaligndatasets.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owdatasets.py to test_owdatasets.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owfilter.py to test_owfilter.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owscoregenes.py to test_owscoregenes.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owmultisample.py to test_owmultisample.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_load_data.py to test_load_data.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owtsne.py to test_owtsne.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owmarkergenes.py to test_owmarkergenes.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/test_owgenerank.py to test_owgenerank.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/owscorecells.py to owscorecells.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess/test_scbnorm.py to test_scbnorm.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess/test_cca.py to test_cca.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess/test_scpreprocess.py to test_scpreprocess.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess/test_alignment.py to test_alignment.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tests/preprocess/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owfilter.py to owfilter.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/contingency_table.py to contingency_table.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/load_data.py to load_data.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owaligndatasets.py to owaligndatasets.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owdotmatrix.py to owdotmatrix.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owmarkergenes.py to owmarkergenes.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owscpreprocess.py to owscpreprocess.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owloaddata.py to owloaddata.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owscoregenes.py to owscoregenes.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owscdatasets.py to owscdatasets.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owbatchnorm.py to owbatchnorm.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owscorecells.py to owscorecells.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owmultisample.py to owmultisample.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/widgets/owtsne.py to owtsne.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/update_check.py to update_check.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/splash.py to splash.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/welcome.py to welcome.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/iconview.py to iconview.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/config.py to config.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/launcher/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/orangecontrib/single_cell/tutorials/__init__.py to __init__.cpython-36.pyc writing byte-compilation script '/tmp/tmpkrnrz6ld.py' /usr/local/bin/python3.6 /tmp/tmpkrnrz6ld.py removing /tmp/tmpkrnrz6ld.py running install_data creating /construction/biology/py-orange3-single-cell/stage/usr/local/help creating /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/index.html -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/Orange3ExampleAdd-ondoc.stp -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/Orange3ExampleAdd-ondoc.hhk -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/.buildinfo -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/Orange3ExampleAdd-ondoc.hhp -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/Orange3ExampleAdd-ondoc.hhc -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/genindex.html -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell creating /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/filter.html -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/scoregenes.html -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/scorecells.html -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/tsne.html -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/singlecelldatasets.html -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/normalize.html -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/louvain.html -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/widgets creating /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/down.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/up.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/searchtools.js -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/doctools.js -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/plus.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/nature.css -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/up-pressed.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/underscore-1.3.1.js -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/pygments.css -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/jquery.js -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/minus.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/jquery-3.1.0.js -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/style.css -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/file.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/comment-bright.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/down-pressed.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/websupport.js -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/underscore.js -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/basic.css -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/ajax-loader.gif -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/comment-close.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/comment.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_static creating /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/LouvainClustering-Example.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/ScoreGenes-stamped.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/LouvainClustering-stamped.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/tSNE-stamped.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/SingleCellDatasets-stamped.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/Filter-Example.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/Normalize-stamped.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/ScoreCells-stamped.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/Filter-stamped.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/tSNE-Example.png -> /construction/biology/py-orange3-single-cell/stage/usr/local/help/orange3-single_cell/_images running install_egg_info Copying Orange3_SingleCell.egg-info to /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/Orange3_SingleCell-0.8.2-py3.6.egg-info Installing /construction/biology/py-orange3-single-cell/stage/usr/local/lib/python3.6/site-packages/Orange3_SingleCell-0.8.2-py3.6-nspkg.pth running install_scripts writing list of installed files to '/construction/biology/py-orange3-single-cell/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-orange3-single-cell-0.8.2 file sizes/checksums [271]: ... done packing files [271]: ... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 9 DEC 2018 at 13:29:23 UTC Duration: 00:02:28