=> Building biology/phyml Started : Thursday, 7 MAR 2019 at 18:27:42 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.192.g15ae7f0-DEVELOPMENT #34: Tue Feb 19 09:07:07 PST 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for phyml-3.3.20180621_1,1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ====> MPI (Message Passing Interface) support: you can only select none or one of them MPICH=off: Parallel processing support via MPICH OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PKG_CONFIG=pkgconf XDG_DATA_HOME=/construction/biology/phyml XDG_CONFIG_HOME=/construction/biology/phyml HOME=/construction/biology/phyml TMPDIR="/tmp" PATH=/construction/biology/phyml/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- --disable-beagle --disable-mpi --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/phyml XDG_CONFIG_HOME=/construction/biology/phyml HOME=/construction/biology/phyml TMPDIR="/tmp" PATH=/construction/biology/phyml/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/phyml/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/phyml" EXAMPLESDIR="share/examples/phyml" DATADIR="share/phyml" WWWDIR="www/phyml" ETCDIR="etc/phyml" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phyml DOCSDIR=/usr/local/share/doc/phyml EXAMPLESDIR=/usr/local/share/examples/phyml WWWDIR=/usr/local/www/phyml ETCDIR=/usr/local/etc/phyml -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.2 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> phyml-3.3.20180621_1,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> phyml-3.3.20180621_1,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of phyml-3.3.20180621_1,1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by phyml-3.3.20180621_1,1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by phyml-3.3.20180621_1,1 for building => SHA256 Checksum OK for stephaneguindon-phyml-v3.3.20180621_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by phyml-3.3.20180621_1,1 for building ===> Extracting for phyml-3.3.20180621_1,1 => SHA256 Checksum OK for stephaneguindon-phyml-v3.3.20180621_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for phyml-3.3.20180621_1,1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> phyml-3.3.20180621_1,1 depends on package: autoconf>=2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_2.txz Installing autoconf-2.69_2... `-- Installing autoconf-wrapper-20131203... `-- Extracting autoconf-wrapper-20131203: .......... done `-- Installing indexinfo-0.3.1... `-- Extracting indexinfo-0.3.1: .... done `-- Installing m4-1.4.18_1,1... `-- Extracting m4-1.4.18_1,1: .......... done `-- Installing perl5-5.28.1... `-- Extracting perl5-5.28.1: .......... done Extracting autoconf-2.69_2: .......... done Message from perl5-5.28.1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> phyml-3.3.20180621_1,1 depends on package: autoconf>=2.69 - found ===> Returning to build of phyml-3.3.20180621_1,1 ===> phyml-3.3.20180621_1,1 depends on package: automake>=1.16.1 - not found ===> Installing existing package /packages/All/automake-1.16.1_1.txz Installing automake-1.16.1_1... Extracting automake-1.16.1_1: .......... done ===> phyml-3.3.20180621_1,1 depends on package: automake>=1.16.1 - found ===> Returning to build of phyml-3.3.20180621_1,1 ===> phyml-3.3.20180621_1,1 depends on executable: libtoolize - not found ===> Installing existing package /packages/All/libtool-2.4.6_1.txz Installing libtool-2.4.6_1... Extracting libtool-2.4.6_1: .......... done ===> phyml-3.3.20180621_1,1 depends on executable: libtoolize - found ===> Returning to build of phyml-3.3.20180621_1,1 ===> phyml-3.3.20180621_1,1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.6.0,1.txz Installing pkgconf-1.6.0,1... Extracting pkgconf-1.6.0,1: .......... done ===> phyml-3.3.20180621_1,1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of phyml-3.3.20180621_1,1 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for phyml-3.3.20180621_1,1 configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-portbld-dragonfly5.5 checking host system type... x86_64-portbld-dragonfly5.5 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of cc... gcc3 checking dependency style of cc... (cached) gcc3 checking for log in -lm... yes checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for float.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... (cached) yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... (cached) yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... (cached) yes checking for strstr... (cached) yes checking pkg-config is at least version 0.9.0... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for phyml-3.3.20180621_1,1 --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in src --- intro --- --- main.o --- --- utilities.o --- --- optimiz.o --- --- lk.o --- --- intro --- .: Building [phyml]. Version 3.3.20180621 :. --- main.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c --- utilities.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT utilities.o -MD -MP -MF .deps/utilities.Tpo -c -o utilities.o utilities.c --- optimiz.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT optimiz.o -MD -MP -MF .deps/optimiz.Tpo -c -o optimiz.o optimiz.c --- bionj.o --- --- lk.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT lk.o -MD -MP -MF .deps/lk.Tpo -c -o lk.o lk.c --- bionj.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT bionj.o -MD -MP -MF .deps/bionj.Tpo -c -o bionj.o bionj.c --- main.o --- mv -f .deps/main.Tpo .deps/main.Po --- models.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT models.o -MD -MP -MF .deps/models.Tpo -c -o models.o models.c --- bionj.o --- mv -f .deps/bionj.Tpo .deps/bionj.Po --- free.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT free.o -MD -MP -MF .deps/free.Tpo -c -o free.o free.c mv -f .deps/free.Tpo .deps/free.Po --- help.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT help.o -MD -MP -MF .deps/help.Tpo -c -o help.o help.c --- lk.o --- lk.c: In function 'dLk': lk.c:760:12: warning: 'd2lk' may be used uninitialized in this function [-Wmaybe-uninitialized] d2lk /= lk; ~~~~~^~~~~ --- help.o --- mv -f .deps/help.Tpo .deps/help.Po --- simu.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT simu.o -MD -MP -MF .deps/simu.Tpo -c -o simu.o simu.c --- models.o --- mv -f .deps/models.Tpo .deps/models.Po --- eigen.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT eigen.o -MD -MP -MF .deps/eigen.Tpo -c -o eigen.o eigen.c --- lk.o --- mv -f .deps/lk.Tpo .deps/lk.Po --- pars.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT pars.o -MD -MP -MF .deps/pars.Tpo -c -o pars.o pars.c --- optimiz.o --- mv -f .deps/optimiz.Tpo .deps/optimiz.Po --- alrt.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT alrt.o -MD -MP -MF .deps/alrt.Tpo -c -o alrt.o alrt.c --- simu.o --- mv -f .deps/simu.Tpo .deps/simu.Po --- interface.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT interface.o -MD -MP -MF .deps/interface.Tpo -c -o interface.o interface.c --- alrt.o --- mv -f .deps/alrt.Tpo .deps/alrt.Po --- cl.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT cl.o -MD -MP -MF .deps/cl.Tpo -c -o cl.o cl.c --- eigen.o --- mv -f .deps/eigen.Tpo .deps/eigen.Po --- spr.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT spr.o -MD -MP -MF .deps/spr.Tpo -c -o spr.o spr.c --- pars.o --- mv -f .deps/pars.Tpo .deps/pars.Po --- draw.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT draw.o -MD -MP -MF .deps/draw.Tpo -c -o draw.o draw.c --- interface.o --- mv -f .deps/interface.Tpo .deps/interface.Po --- stats.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT stats.o -MD -MP -MF .deps/stats.Tpo -c -o stats.o stats.c --- draw.o --- mv -f .deps/draw.Tpo .deps/draw.Po --- rates.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT rates.o -MD -MP -MF .deps/rates.Tpo -c -o rates.o rates.c --- cl.o --- mv -f .deps/cl.Tpo .deps/cl.Po --- mcmc.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT mcmc.o -MD -MP -MF .deps/mcmc.Tpo -c -o mcmc.o mcmc.c --- spr.o --- mv -f .deps/spr.Tpo .deps/spr.Po --- times.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT times.o -MD -MP -MF .deps/times.Tpo -c -o times.o times.c --- utilities.o --- mv -f .deps/utilities.Tpo .deps/utilities.Po --- tiporder.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT tiporder.o -MD -MP -MF .deps/tiporder.Tpo -c -o tiporder.o tiporder.c --- times.o --- mv -f .deps/times.Tpo .deps/times.Po --- m4.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT m4.o -MD -MP -MF .deps/m4.Tpo -c -o m4.o m4.c --- mcmc.o --- mv -f .deps/mcmc.Tpo .deps/mcmc.Po --- io.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT io.o -MD -MP -MF .deps/io.Tpo -c -o io.o io.c --- tiporder.o --- mv -f .deps/tiporder.Tpo .deps/tiporder.Po --- make.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT make.o -MD -MP -MF .deps/make.Tpo -c -o make.o make.c --- rates.o --- mv -f .deps/rates.Tpo .deps/rates.Po --- nexus.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT nexus.o -MD -MP -MF .deps/nexus.Tpo -c -o nexus.o nexus.c --- m4.o --- mv -f .deps/m4.Tpo .deps/m4.Po --- init.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT init.o -MD -MP -MF .deps/init.Tpo -c -o init.o init.c --- nexus.o --- mv -f .deps/nexus.Tpo .deps/nexus.Po --- xml.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT xml.o -MD -MP -MF .deps/xml.Tpo -c -o xml.o xml.c --- make.o --- mv -f .deps/make.Tpo .deps/make.Po --- date.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT date.o -MD -MP -MF .deps/date.Tpo -c -o date.o date.c --- io.o --- mv -f .deps/io.Tpo .deps/io.Po --- sse.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT sse.o -MD -MP -MF .deps/sse.Tpo -c -o sse.o sse.c mv -f .deps/sse.Tpo .deps/sse.Po --- avx.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT avx.o -MD -MP -MF .deps/avx.Tpo -c -o avx.o avx.c --- date.o --- mv -f .deps/date.Tpo .deps/date.Po --- tbe.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT tbe.o -MD -MP -MF .deps/tbe.Tpo -c -o tbe.o tbe.c --- xml.o --- mv -f .deps/xml.Tpo .deps/xml.Po --- mixt.o --- cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT mixt.o -MD -MP -MF .deps/mixt.Tpo -c -o mixt.o mixt.c --- stats.o --- mv -f .deps/stats.Tpo .deps/stats.Po --- tbe.o --- mv -f .deps/tbe.Tpo .deps/tbe.Po --- avx.o --- mv -f .deps/avx.Tpo .deps/avx.Po --- mixt.o --- mv -f .deps/mixt.Tpo .deps/mixt.Po --- init.o --- mv -f .deps/init.Tpo .deps/init.Po --- phyml --- cc -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o rates.o mcmc.o times.o tiporder.o m4.o io.o make.o nexus.o init.o xml.o date.o sse.o avx.o tbe.o mixt.o -lm -lm --- all-am --- Done. -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for phyml-3.3.20180621_1,1 ===> Generating temporary packing list Making install in src .: Building [phyml]. Version 3.3.20180621 :. Done. /bin/mkdir -p '/construction/biology/phyml/stage/usr/local/bin' install -s -m 555 phyml '/construction/biology/phyml/stage/usr/local/bin' (cd /construction/biology/phyml/phyml-3.3.20180621/doc && install -m 0644 *.pdf /construction/biology/phyml/stage/usr/local/share/doc/phyml) ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for phyml-3.3.20180621_1,1 file sizes/checksums [17]: . done packing files [17]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 7 MAR 2019 at 18:28:33 UTC Duration: 00:00:50