=> Building biology/ncbi-blast+ Started : Sunday, 9 DEC 2018 at 13:15:54 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.25.g9bb66-DEVELOPMENT #33: Mon Dec 3 06:33:52 PST 2018 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.5-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.5-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- ncbi_cv_prog_amq_w=no MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/biology/ncbi-blast+ XDG_CONFIG_HOME=/construction/biology/ncbi-blast+ HOME=/construction/biology/ncbi-blast+ TMPDIR="/tmp" PATH=/construction/biology/ncbi-blast+/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- AR="ar cr" --without-boost --libdir=/usr/local/lib/ncbi-tools++ --with-lmdb=/usr/local --with-lzo=/usr/local --with-sqlite3=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/ncbi-blast+ XDG_CONFIG_HOME=/construction/biology/ncbi-blast+ HOME=/construction/biology/ncbi-blast+ TMPDIR="/tmp" PATH=/construction/biology/ncbi-blast+/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/ncbi-blast+/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.26.2 PERL_VER=5.26 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.26 PROFILE="@comment " DOCSDIR="share/doc/ncbi-blast+" EXAMPLESDIR="share/examples/ncbi-blast+" DATADIR="share/ncbi-blast+" WWWDIR="www/ncbi-blast+" ETCDIR="etc/ncbi-blast+" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-blast+ DOCSDIR=/usr/local/share/doc/ncbi-blast+ EXAMPLESDIR=/usr/local/share/examples/ncbi-blast+ WWWDIR=/usr/local/www/ncbi-blast+ ETCDIR=/usr/local/etc/ncbi-blast+ -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-BE USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.2 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500500 OSVERSION=9999999 OSREL=5.5 _OSRELEASE=5.5-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License PD accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> ncbi-blast+-2.7.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> ncbi-blast+-2.7.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.7.1_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.7.1_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.7.1_1 for building => SHA256 Checksum OK for ncbi-blast-2.7.1+-src.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.7.1_1 for building ===> Extracting for ncbi-blast+-2.7.1_1 ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.7.1_1 for building => SHA256 Checksum OK for ncbi-blast-2.7.1+-src.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for ncbi-blast+-2.7.1_1 ===> Applying ports patches for ncbi-blast+-2.7.1_1 ===> Applying dragonfly patches for ncbi-blast+-2.7.1_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> ncbi-blast+-2.7.1_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... `-- Installing gettext-runtime-0.19.8.1_2... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gettext-runtime-0.19.8.1_2: .......... done Extracting gmake-4.2.1_3: .......... done ===> ncbi-blast+-2.7.1_1 depends on executable: gmake - found ===> Returning to build of ncbi-blast+-2.7.1_1 ===> ncbi-blast+-2.7.1_1 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.15.txz Installing python27-2.7.15... `-- Installing expat-2.2.6_1... `-- Extracting expat-2.2.6_1: .......... done `-- Installing libffi-3.2.1_3... `-- Extracting libffi-3.2.1_3: .......... done `-- Installing libressl-2.8.2... `-- Extracting libressl-2.8.2: .......... done `-- Installing ncurses-6.1.20180728... `-- Extracting ncurses-6.1.20180728: .......... done `-- Installing readline-7.0.3_2... `-- Extracting readline-7.0.3_2: .......... done Extracting python27-2.7.15: .......... done Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> ncbi-blast+-2.7.1_1 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of ncbi-blast+-2.7.1_1 ===> ncbi-blast+-2.7.1_1 depends on package: perl5>=5.26<5.27 - not found ===> Installing existing package /packages/All/perl5-5.26.2_2.txz Installing perl5-5.26.2_2... Extracting perl5-5.26.2_2: .......... done Message from perl5-5.26.2_2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> ncbi-blast+-2.7.1_1 depends on package: perl5>=5.26<5.27 - found ===> Returning to build of ncbi-blast+-2.7.1_1 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> ncbi-blast+-2.7.1_1 depends on shared library: libpcre.so - not found ===> Installing existing package /packages/All/pcre-8.42.txz Installing pcre-8.42... Extracting pcre-8.42: .......... done ===> ncbi-blast+-2.7.1_1 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so) ===> Returning to build of ncbi-blast+-2.7.1_1 ===> ncbi-blast+-2.7.1_1 depends on shared library: liblmdb.so - not found ===> Installing existing package /packages/All/lmdb-0.9.22_2,1.txz Installing lmdb-0.9.22_2,1... Extracting lmdb-0.9.22_2,1: .......... done ===> ncbi-blast+-2.7.1_1 depends on shared library: liblmdb.so - found (/usr/local/lib/liblmdb.so) ===> Returning to build of ncbi-blast+-2.7.1_1 ===> ncbi-blast+-2.7.1_1 depends on shared library: liblzo2.so - not found ===> Installing existing package /packages/All/lzo2-2.10_1.txz Installing lzo2-2.10_1... Extracting lzo2-2.10_1: .......... done ===> ncbi-blast+-2.7.1_1 depends on shared library: liblzo2.so - found (/usr/local/lib/liblzo2.so) ===> Returning to build of ncbi-blast+-2.7.1_1 ===> ncbi-blast+-2.7.1_1 depends on shared library: libgnutls.so - not found ===> Installing existing package /packages/All/gnutls-3.5.19_1.txz Installing gnutls-3.5.19_1... `-- Installing ca_root_nss-3.40... `-- Extracting ca_root_nss-3.40: ........ done `-- Installing gmp-6.1.2_1... `-- Extracting gmp-6.1.2_1: .......... done `-- Installing libidn2-2.0.5_1... | `-- Installing libunistring-0.9.10_1... | `-- Extracting libunistring-0.9.10_1: .......... done `-- Extracting libidn2-2.0.5_1: .......... done `-- Installing libtasn1-4.13_1... `-- Extracting libtasn1-4.13_1: .......... done `-- Installing nettle-3.4_1... `-- Extracting nettle-3.4_1: .......... done `-- Installing p11-kit-0.23.14... `-- Extracting p11-kit-0.23.14: .......... done `-- Installing trousers-0.3.14_2... | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. `-- Extracting trousers-0.3.14_2: .......... done Extracting gnutls-3.5.19_1: .......... done Message from ca_root_nss-3.40: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===> ncbi-blast+-2.7.1_1 depends on shared library: libgnutls.so - found (/usr/local/lib/libgnutls.so) ===> Returning to build of ncbi-blast+-2.7.1_1 ===> ncbi-blast+-2.7.1_1 depends on shared library: libtspi.so - found (/usr/local/lib/libtspi.so) ===> ncbi-blast+-2.7.1_1 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so) ===> ncbi-blast+-2.7.1_1 depends on shared library: libidn2.so - found (/usr/local/lib/libidn2.so) ===> ncbi-blast+-2.7.1_1 depends on shared library: libnettle.so - found (/usr/local/lib/libnettle.so) ===> ncbi-blast+-2.7.1_1 depends on shared library: libhogweed.so - found (/usr/local/lib/libhogweed.so) ===> ncbi-blast+-2.7.1_1 depends on shared library: libtasn1.so - found (/usr/local/lib/libtasn1.so) ===> ncbi-blast+-2.7.1_1 depends on shared library: libp11-kit.so - found (/usr/local/lib/libp11-kit.so) ===> ncbi-blast+-2.7.1_1 depends on shared library: libgcrypt.so - not found ===> Installing existing package /packages/All/libgcrypt-1.8.4_1.txz Installing libgcrypt-1.8.4_1... `-- Installing libgpg-error-1.32_1... `-- Extracting libgpg-error-1.32_1: .......... done Extracting libgcrypt-1.8.4_1: .......... done ===> ncbi-blast+-2.7.1_1 depends on shared library: libgcrypt.so - found (/usr/local/lib/libgcrypt.so) ===> Returning to build of ncbi-blast+-2.7.1_1 ===> ncbi-blast+-2.7.1_1 depends on shared library: libgpg-error.so - found (/usr/local/lib/libgpg-error.so) ===> ncbi-blast+-2.7.1_1 depends on shared library: libsqlite3.so - not found ===> Installing existing package /packages/All/sqlite3-3.25.1_1.txz Installing sqlite3-3.25.1_1... 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(cached) yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for liblzo2 in /usr/local... yes checking for libpcre in /usr/local... yes configure: using local mbedTLS copy in connect/mbedtls checking for libgmp... no checking for libgcrypt-config... /usr/local/bin/libgcrypt-config checking for libgcrypt in /usr/local... yes checking for libhogweed... no checking for libgnutls-config... no checking for libgnutls... no checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... /usr/local/bin/python2.7 checking for usable Python 2.7 libraries... yes checking for python2.5... no checking for python2.6... no checking for python2.7... /usr/local/bin/python2.7 checking for usable Python 2.7 libraries... yes checking for python3... no checking for perl... (cached) /usr/local/bin/perl checking for usable Perl libraries... yes checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for wx-config... no checking for wxWidgets... no checking for FastCGI libraries... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories... no checking for ORBacus... no checking for ICU... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for libexslt... no checking for Xerces-C++... no checking for Xalan-C++... no checking for Zorba... no checking for libsqlite3 in /usr/local... yes checking sqlite3async.h usability... no checking sqlite3async.h presence... no checking for sqlite3async.h... no checking for sqlite3_unlock_notify... yes checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking for libjpeg... no checking for libpng... no checking for libtiff... no checking for libgif... no checking for libungif... no checking for libXpm... no checking for freetype-config... no checking for libftgl... no checking for libmagic... yes checking for libmimetic... no checking for soapcpp2... no checking for wsdl2h... no checking for libgsoapssl++... no checking for libavrocpp... no checking for USC Cereal... no checking for libsasl2... no checking for libmongoclient... no checking for libmongocxx... no checking for libgmock... no checking lapacke.h usability... no checking lapacke.h presence... no checking for lapacke.h... no checking lapacke/lapacke.h usability... no checking lapacke/lapacke.h presence... no checking for lapacke/lapacke.h... no checking clapack.h usability... no checking clapack.h presence... no checking for clapack.h... no checking Accelerate/Accelerate.h usability... no checking Accelerate/Accelerate.h presence... no checking for Accelerate/Accelerate.h... no checking for liblapack... no checking for liblmdb in /usr/local... yes checking for libuv... no checking for libssh2... no checking for libcassandra... no checking for libxlsxwriter... no checking for libgrpc++... no configure: looking for configurables below /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++... configure: ...done configure: updating cache config.cache configure: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/config.status config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache/Makefile config.status: creating 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/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.rules_with_autodep config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cmake/config.cmake.h config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cmake/ncbiconf_msvc_site.h config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/relocate.sh config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/Makefile.precompile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/ncbicfg.c config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/./Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/common/ncbi_build_ver.h config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h config.status: executing default commands /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/ncbicfg.c is updated /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/common/ncbi_build_ver.h is updated gmake[2]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/helpers TMPL=run_with_lock -kw all gmake[3]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/helpers/run_with_lock.c. gcc -c -g -O2 /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc run_with_lock.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lm -lpthread -o run_with_lock strip run_with_lock /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f run_with_lock /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock gmake[3]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers' gmake[2]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers' Platform not defined for DragonFly x86_64 -- please fix me Prebuilt project_tree_builder not found =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O LIBRARIES: build as static by default FEATURES: GCC MT LFS DLL unix WinMain PACKAGES: enabled: Iconv Z BZ2 LZO PCRE MBEDTLS GCRYPT PYTHON PYTHON27 PERL SQLITE3 MAGIC LMDB disabled: UUID FUSE LIBUNWIND LocalZ LocalBZ2 LocalPCRE GMP NETTLE GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON25 PYTHON26 PYTHON3 Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM FreeType FTGL MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 GMOCK LAPACK LocalLMDB LIBUV LIBSSH2 CASSANDRA LIBXLSXWRITER GRPC PROJECTS: enabled: cgi serial objects dbapi app algo disabled: local_lbsm connext ncbi_crypt bdb ctools gui gbench Tools / flags / paths: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.mk Configuration header: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc/ncbiconf_unix.h To build everything: cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && /usr/local/bin/gmake all_r or simply run /usr/local/bin/gmake in the current directory ******* CONFIGURATION SUCCESSFUL ******* -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for ncbi-blast+-2.7.1_1 gmake[2]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++' if test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && gmake -f Makefile.flat; \ elif test -s ""; then \ cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && gmake -w all_p; \ else \ cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build && gmake -w all_r; \ fi gmake[3]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/ctools/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/ctools/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT ctools/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/ctools/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/sra/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/sra/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/sra/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT sra/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sra/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/gui/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/gui/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT gui/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/gui/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/sample/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/sample/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT sample/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sample/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/internal/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/internal/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/internal/Makefile /usr/local/bin/gmake -C corelib -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake[6] (Makefile.precompile): Nothing to be done for `all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=corelib -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=test_mt -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[6]: *** No rule to make target '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=corelib -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_system.cpp: In function 'bool ncbi::SetMemoryLimitHard(size_t, ncbi::TLimitsPrintHandler, ncbi::TLimitsPrintParameter)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_system.cpp:386:25: warning: comparison of integer expressions of different signedness: 'rlim_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rl.rlim_cur > max_size) { ~~~~~~~~~~~~^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_system.cpp:405:27: warning: comparison of integer expressions of different signedness: 'rlim_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rlas.rlim_cur > cur_soft_limit) { ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiapp.cpp: In member function 'void ncbi::CNcbiApplication::x_TryMain(ncbi::EAppDiagStream, const char*, int*, bool*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiapp.cpp:460:20: warning: catching polymorphic type 'class ncbi::CArgHelpException' by value [-Wcatch-value=] catch (CArgHelpException) { ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiapp.cpp: In member function 'int ncbi::CNcbiApplication::AppMain(int, const char* const*, const char* const*, ncbi::EAppDiagStream, const char*, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiapp.cpp:792:20: warning: catching polymorphic type 'class ncbi::CArgException' by value [-Wcatch-value=] catch (CArgException) { ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiargs.cpp: In member function 'bool ncbi::CArgDescriptions::x_CreateArg(const string&, const string&, bool, const string&, unsigned int, ncbi::CArgs&, bool, ncbi::CArgValue**) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiargs.cpp:2917:12: warning: catching polymorphic type 'class ncbi::CArgException' by value [-Wcatch-value=] catch (CArgException) { ^~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_os_unix.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE 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-pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp -o ncbid/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:854:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:1776:16: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:1824:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:1912:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:1944:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In function 'bool ncbi::s_GetLogConfigBool(ncbi::CTempString, bool, ncbi::CNcbiRegistry*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:3103:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:3244:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbifile.hpp:48, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:362:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'bool ncbi::SDiagMessage::x_ParseExtraArgs(const string&, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:4235:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:4247:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'bool ncbi::SDiagMessage::ParseMessage(const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:4334:20: warning: catching polymorphic type 'class ncbi::CTimeException' by value [-Wcatch-value=] catch (CTimeException) { ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:4520:28: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:4606:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'virtual void ncbi::CFileHandleDiagHandler::Reopen(ncbi::CDiagHandler::TReopenFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:5862:16: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_process.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list, std::__cxx11::basic_string > >; ncbi::CStringPairs::TStrPairs = std::__cxx11::list, std::__cxx11::basic_string > >; EOwnership = ENcbiOwnership]': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:3949:9: required from 'void ncbi::CStringPairs::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list, std::__cxx11::basic_string > >]' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag.cpp:4233:52: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:3989:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbifile.cpp: In function 'void ncbi::s_GetFileSystemInfo(const string&, ncbi::CFileUtil::SFileSystemInfo*, ncbi::TFileSystemInfo)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbifile.cpp:5007:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbithr.cpp: In static member function 'static bool ncbi::CThread::IsMain()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbithr.cpp:516:9: warning: variable 'id' set but not used [-Wunused-but-set-variable] TID id = sx_ThreadId; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbitime.cpp: In member function 'bool ncbi::CTime::x_Init(const string&, const ncbi::CTimeFormat&, ncbi::CTime::EErrAction)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbitime.cpp:696:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbitime.cpp:715:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/request_ctx.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/request_ctx.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::map, std::__cxx11::basic_string, ncbi::PNocase_Generic > >; ncbi::CStringPairs::TStrPairs = std::map, std::__cxx11::basic_string, ncbi::PNocase_Generic > >; EOwnership = ENcbiOwnership]': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/request_ctx.cpp:725:43: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:3989:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/resource_info.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap, std::__cxx11::basic_string >; ncbi::CStringPairs::TStrPairs = std::multimap, std::__cxx11::basic_string >; EOwnership = ENcbiOwnership]': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:3949:9: required from 'void ncbi::CStringPairs::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap, std::__cxx11::basic_string >]' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/resource_info.cpp:326:43: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:3989:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~ iag.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/version.cpp -o version.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/expr.cpp -o expr.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FI/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_url.cpp: In member function 'void ncbi::CUrl::SetUrl(const string&, const ncbi::IUrlEncoder*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_url.cpp:460:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_cookies.cpp: In member function 'bool ncbi::CHttpCookie::Validate() const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_cookies.cpp:327:12: warning: catching polymorphic type 'class ncbi::CHttpCookieException' by value [-Wcatch-value=] catch (CHttpCookieException) { ^~~~~~~~~~~~~~~~~~~~ LE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/guard.cpp -o guard.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/request_status.cpp -o request_status.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib TMPL=test_mt -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/test_mt.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.test_mt.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[6]: *** No rule to make target '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib/test' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C util -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/diff/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/diff/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT diff/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/diff/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/image/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/image/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT image/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/image/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/qparse/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/qparse/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT qparse/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/qparse/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/lmdb/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/lmdb/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/lmdb/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT lmdb/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdb/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/lmdbxx/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/lmdbxx/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/lmdbxx/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT lmdbxx/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdbxx/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/demo/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util TMPL=util -w export-headers gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util TMPL=util -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/format_guess.cpp: In member function 'bool ncbi::CFormatGuess::TestFormatNewick(ncbi::CFormatGuess::EMode)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/format_guess.cpp:1008:24: warning: 'char* strncpy(char*, const char*, size_t)' accessing 12 bytes at offsets 0 and [0, 16397] may overlap up to 12 bytes at offset 11 [-Wrestrict] strncpy(test_buf, test_buf + num_read, check_size); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp: In static member function 'static void ncbi::CDictionaryUtil::Stem(const string&, std::__cxx11::string*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [5]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [4]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [4]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [4]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [6]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [6]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [8]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [5]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [8]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/miscmath.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/static_set.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/dictionary.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/unicode.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/md5.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/ascii85.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/format_guess.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/logrotate.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/strsearch.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/smalldns.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/itree.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/checksum.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/utf8.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/random_gen.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL 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-D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/checksum.cpp -o checksum.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/itree.cpp -o itree.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/stream_source.cpp -o stream_source.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C regexp -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/regexp TMPL=regexp -w mark-as-disabled gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -C xregexp -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -C compress -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress' /usr/local/bin/gmake -C bzip2 -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -C zlib -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -C api -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api TMPL=compress -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api TMPL=compress -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/reader_zlib.cpp: In destructor 'virtual ncbi::CNlmZipReader::~CNlmZipReader()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/reader_zlib.cpp:281:19: warning: enum constant in boolean context [-Wint-in-bool-context] if ( m_Own && fOwnReader ) { ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_zip.cpp:45: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/miniz/miniz.c: In function 'ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/miniz/miniz.c: In function 'void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/miniz/miniz.c:2327:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/miniz/miniz.c:2327:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; ^ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/compress.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/compress' /usr/local/bin/gmake -C diff -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/diff' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/diff' /usr/local/bin/gmake -C image -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/image' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/image' /usr/local/bin/gmake -C tables -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/tables/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/tables/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/tables TMPL=tables -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/tables TMPL=tables -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/tables/raw_scoremat.c. /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.tables.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C creaders -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/creaders TMPL=creaders -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/creaders TMPL=creaders -w all In function 's_RemoveBasePairCountCommentsFromData', inlined from 's_ProcessAlignFileRawForMarkedIDs' at /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c:4452:5, inlined from 'ReadAlignmentFileEx2' at /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c:6116:9: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c:4418:25: warning: 'strcpy' accessing 1 byte at offsets 0 and [0, 9223372036854775807] may overlap 1 byte at offset 0 [-Wrestrict] strcpy (lip->data, cp); ^~~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c. /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.a .libcreaders.a.stamp ar cr libcreaders.a alnread.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libcreaders.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcreaders.a /bin/ln -f .creaders.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.creaders.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -C sequtil -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil TMPL=sequtil -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil TMPL=sequtil -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -C bitset -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/bitset/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/bitset/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/util/bitset/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/bitset' /usr/local/bin/gmake -C qparse -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/qparse' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/qparse' /usr/local/bin/gmake -C lmdb -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdb' /usr/local/bin/gmake -C lmdbxx -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/demo' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util/demo' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C connect -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ext/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ext/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT ext/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/ext/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/daemons/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/daemons/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT daemons/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/daemons/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connssl -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connect -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xxconnect -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xconnect -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xthrserv -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connssl -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md_wrap.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_gnutls.c. /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT 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/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=connect -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c:337:68: warning: variable 'p' set but not used [-Wunused-but-set-variable] const SHEAP_HeapBlock* b = (const SHEAP_HeapBlock*) base, *p = 0; ^ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ansi_ext.c. 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/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c: In function 'remove_comments': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:281:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (i = 0; i < (ptr - string) + end_token_len; i++) ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' string = ptr + end_token_len - 1; ^~~~~~ blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/parson.c -o parson.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.connect.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xxconnect -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xconnect -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect TMPL=xthrserv -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/server.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/server.cpp -o server.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C services -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=xconnserv -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=xconnserv -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_app.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_commit_thread.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_main_loop.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_cleanup.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_offline_mode.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_control_thread.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/tmp_wn_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFIIn file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/grid_worker_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_key.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_api.cpp:42: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/connect/services/netcomponent.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/connect/services/compound_id.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id_impl.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp:39: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp: In member function 'Uint4 ncbi::CCompoundIDField::GetIPv4Address() const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp:158:27: warning: enum constant in boolean context [-Wint-in-bool-context] m_Impl->m_Type != eCIT_IPv4SockAddr, m_IPv4SockAddr.m_IPv4Addr); ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:530:12: note: in definition of macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:526:5: note: in expansion of macro 'NCBI_EXCEPTION_VAR_EX' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:538:5: note: in expansion of macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR(NCBI_EXCEPTION_EMPTY_NAME, \ ^~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:549:30: note: in expansion of macro 'NCBI_EXCEPTION' NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:562:5: note: in expansion of macro 'NCBI_THROW' NCBI_THROW(exception_class, err_code, FORMAT(message)) ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:562:43: note: in expansion of macro 'FORMAT' NCBI_THROW(exception_class, err_code, FORMAT(message)) ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp:143:13: note: in expansion of macro 'NCBI_THROW_FMT' NCBI_THROW_FMT(CCompoundIDException, eInvalidType, \ ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp:157:1: note: in expansion of macro 'CIF_GET_IMPL' CIF_GET_IMPL(Uint4, GetIPv4Address, eCIT_IPv4Address && ^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp: In member function 'Uint2 ncbi::CCompoundIDField::GetPort() const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp:161:27: warning: enum constant in boolean context [-Wint-in-bool-context] m_Impl->m_Type != eCIT_IPv4SockAddr, m_IPv4SockAddr.m_Port); ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:530:12: note: in definition of macro 'NCBI_EXCEPTION_THROW' throw (exception_var) ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:526:5: note: in expansion of macro 'NCBI_EXCEPTION_VAR_EX' NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:538:5: note: in expansion of macro 'NCBI_EXCEPTION_VAR' NCBI_EXCEPTION_VAR(NCBI_EXCEPTION_EMPTY_NAME, \ ^~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:549:30: note: in expansion of macro 'NCBI_EXCEPTION' NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:562:5: note: in expansion of macro 'NCBI_THROW' NCBI_THROW(exception_class, err_code, FORMAT(message)) ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:562:43: note: in expansion of macro 'FORMAT' NCBI_THROW(exception_class, err_code, FORMAT(message)) ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp:143:13: note: in expansion of macro 'NCBI_THROW_FMT' NCBI_THROW_FMT(CCompoundIDException, eInvalidType, \ ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp:160:1: note: in expansion of macro 'CIF_GET_IMPL' CIF_GET_IMPL(Uint2, GetPort, eCIT_Port && ^~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/tmp_wn_info.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp: In static member function 'static ncbi::SNetScheduleAPIImpl::TMode ncbi::SNetScheduleAPIImpl::GetMode(bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:335:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (try_config) return fNetSchedule | fConfigLoading; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_impl.hpp:336:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return fNetSchedule; ^~~~~~ LE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC 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/usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/util.cpp -o util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/clparser.cpp -o clparser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/tmp_wn_info.cpp -o tmp_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o tmp_wn_info.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/neticache_client.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp /usr/bin/c++ -std=gnu++11 -shared -o libncbi_xcache_netcache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC neticache_client.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C ext -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/test' /usr/local/bin/gmake -C daemons -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/daemons' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect/daemons' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C cgi -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi/test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=cgi -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=fcgi -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=cgi -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp: In member function 'void ncbi::CCgiRequest::GetCGIEntries(ncbi::CEntryCollector_Base&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp:1648:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp: In member function 'ncbi::CStringUTF8 ncbi::CCgiEntry::GetValueAsUTF8(ncbi::CCgiEntry::EOnCharsetError) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp:1905:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp.cpp: In member function 'bool ncbi::CCgiApplication::x_ProcessVersionRequest()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp.cpp:1891:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi TMPL=fcgi -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/fcgi_run.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -DNCBI_XFCGI_EXPORTS /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi/test' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C html -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/demo/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html TMPL=html -w export-headers gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html TMPL=html -w all gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/components.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/selection.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/pager.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/page.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/html.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/node.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/node.cpp -o node.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/html.cpp -o html.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/page.cpp -o page.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/pager.cpp -o pager.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/selection.cpp -o selection.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/components.cpp -o components.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/demo' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html/demo' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C build-system -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system' /usr/local/bin/gmake -C helpers -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake[5] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake -C project_tree_builder -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL 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configurable_file.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/local/lib -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -C msbuild -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/build-system' /usr/local/bin/gmake -C serial -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/soap/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/soap/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT soap/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/soap/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=serial -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=cserial -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=serial -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objostr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/member.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/hookdata.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE 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/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xser.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial TMPL=cserial -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/asntypes.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C datatool -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool TMPL=datatool -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/datatool.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/type.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/type.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/statictype.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/type.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/reftype.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/reftype.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/impl/stltypes.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/unitype.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/blocktype.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicetype.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/typestr.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/datatool.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/classstr.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stlstr.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiutil.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicestr.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/datatool.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/value.cpp -o value.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/module.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/moduleset.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/generate.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbitime.hpp:62, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_system.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbifile.hpp:46, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/filecode.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/alexer.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/aparser.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.cpp:66:50: note: in expansion of macro 'THROWS' CDataType* CResolvedTypeSet::GetType(void) const THROWS((CDatatoolException)) ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdparser.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/rpcgen.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiutil.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/aliasstr.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/xsdparser.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdlparser.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdlstr.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/jsdparser.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.hpp:135:36: note: in expansion of macro 'THROWS' CDataType* GetType(void) const THROWS((CDatatoolException)); ^~~~~~ -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/module.cpp -o module.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/generate.cpp -o generate.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/filecode.cpp -o filecode.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/code.cpp -o code.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/fileutil.cpp -o fileutil.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/alexer.cpp -o alexer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/aparser.cpp -o aparser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/parser.cpp -o parser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/lexer.cpp -o lexer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/comments.cpp -o comments.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/test' /usr/local/bin/gmake -C soap -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/soap' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial/soap' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C db -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/db/bdb/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/db/bdb/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /usr/local/bin/gmake -C sqlite -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -C bdb -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/bdb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db/bdb' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/db' /usr/local/bin/gmake -C dbapi -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/simple/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/simple/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT simple/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/lang_bind/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi TMPL=dbapi -w export-headers gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi TMPL=dbapi -w all gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/variant.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/variant.cpp -o variant.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C driver -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/util/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT ftds64/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT ftds95/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dblib/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dblib/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dblib/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT dblib/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/dblib/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/mysql/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT mysql/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/samples/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/handle_stack.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/public.cpp -o public.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/types.cpp -o types.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp /usr/bin/c++ -std=gnu++11 -shared -o libdbapi_driver-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C util -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/local/bin/gmake -C ctlib -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/local/bin/gmake -C ftds64 -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' /usr/local/bin/gmake -C ftds95 -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' /usr/local/bin/gmake -C ftds-default -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/local/bin/gmake -C dblib -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/dblib' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/dblib' /usr/local/bin/gmake -C mysql -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/local/bin/gmake -C odbc -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w mark-as-disabled gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -C samples -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C simple -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/simple' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/simple' /usr/local/bin/gmake -C cache -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/admintool/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/admintool/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/admintool/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT admintool/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o /bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi.a /bin/ln -f .ncbi_xcache_dbapi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi.dep /bin/rm -f libncbi_xcache_dbapi-dll.so .libncbi_xcache_dbapi-dll.so.stamp /usr/bin/c++ -std=gnu++11 -shared -o libncbi_xcache_dbapi-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -ldbapi -ldbapi_driver-dll -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi-dll.so /bin/ln -f .ncbi_xcache_dbapi-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi-dll.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/test' /usr/local/bin/gmake -C admintool -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -C lang_bind -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C objects -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/Makefile.sources builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects -w all Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/local/bin/gmake -w"; export MAKE; \ ( cd $i && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA -oc omssa -or objects/omssa -odi -od omssa.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m access.asn -M "" -oA -oc access -or objects/access -odi -od access.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd access.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA -oc cdd -or objects/cdd -odi -od cdd.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m docsum.asn -M "" -oA -oc docsum -or objects/docsum -odi -od docsum.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA -oc biotree -or objects/biotree -odi -od biotree.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m featdef.asn -M "" -oA -oc featdef -or objects/featdef -odi -od featdef.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m insdseq.asn -M "" -oA -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m macro.asn -M "" -oA -oc macro -or objects/macro -odi -od macro.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m mim.asn -M "" -oA -oc mim -or objects/mim -odi -od mim.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump datatool: 2.17.0 gmake[7]: Leaving dPlatform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me irectory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m objprt.asn -M "" -oA -oc objprt -or objects/objprt -odi -od objprt.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA -oc proj -or objects/proj -odi -od proj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock/seqblock.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/dataPlatform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me tool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m tinyseq.asn -M "" -oA -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA -oc remap -or objects/remap -odi -od remap.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA -oc homologene -or objects/homologene -odi -od homologene.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Warning: (810.1) No service name provided for CTrackMgrClient Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m genesbyloc.asn -M "" -oA -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C general -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh general all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general TMPL=general -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general TMPL=general -w all objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m genesbyloc.asn -M "" -oA -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.general.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/test' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C biblio -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh biblio all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio TMPL=biblio -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio TMPL=biblio -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -C medline -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh medline all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline TMPL=medline -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline TMPL=medline -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.medline.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -C pub -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pub all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub TMPL=pub -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub TMPL=pub -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pub.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -C seqcode -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode TMPL=seqcode -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode TMPL=seqcode -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -C seq -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/Makefile.sources builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -w all Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/local/bin/gmake -w"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock/seqblock.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq TMPL=seq -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq TMPL=seq -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/local/bin/gmake -w"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqblock/seqblock.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Align_def_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Align_def.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/Align_def.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:246:69: note: in expansion of macro 'THROWS' CRef CSubSource::DateFromCollectionDate (const string& test) THROWS((CException)) ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::IsCorrectDateFormat(const string&, bool&, bool&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:446:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException ) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:468:22: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:498:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialimpl.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/Align_def_.cpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq___.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialimpl.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_tree.cpp:2432:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if ( row_n == p_row ) { ~~~~~~^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1651:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=] catch (CAnnotMapperException) { ^~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/sofa_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include seqres__.cpp -o seqres__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE 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seq___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE 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/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL 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-c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/test' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C seqset -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqset all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset TMPL=seqset -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset TMPL=seqset -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C submit -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh submit all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit TMPL=submit -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit TMPL=submit -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.submit.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -C seqedit -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit TMPL=seqedit -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit TMPL=seqedit -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -C seqsplit -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -C id1 -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1 && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh id1 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1 -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1cli -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1 -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id1.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1 TMPL=id1cli -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C id2 -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2 && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh id2 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2 -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2cli -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2 -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqsplit/seqsplit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id2.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2 TMPL=id2cli -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -C entrez2 -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C pubmed -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed TMPL=pubmed -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed TMPL=pubmed -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -C medlars -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh medlars all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars TMPL=medlars -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars TMPL=medlars -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -C mla -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh mla all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mla -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mlacli -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mla -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medlars/medlars.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mla.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla TMPL=mlacli -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -C proj -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh proj all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj TMPL=proj -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj TMPL=proj -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.proj.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -C scoremat -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat TMPL=scoremat -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat TMPL=scoremat -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -C blast -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blast all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=blast -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=blast -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_blast.log.new: No such file or directory. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -C blastdb -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb TMPL=blastdb -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb TMPL=blastdb -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -C blastxml -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml TMPL=blastxml -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml TMPL=blastxml -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -C blastxml2 -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2 && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -C mmdb -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -w all Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me Platform not defined for DragonFly x86_64 -- please fix me gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/local/bin/gmake -w"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb TMPL=mmdb -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb TMPL=mmdb -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/local/bin/gmake -w"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialimpl.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2, from mmdb1___.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb1__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include mmdb1__.cpp -o mmdb1__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include mmdb2__.cpp -o mmdb2__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include mmdb3__.cpp -o mmdb3__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include mmdb1___.cpp -o mmdb1___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include mmdb2___.cpp -o mmdb2___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -C cn3d -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d TMPL=cn3d -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d TMPL=cn3d -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -C cdd -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh cdd all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd TMPL=cdd -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd TMPL=cdd -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_cdd.log.new: No such file or directory. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -C ncbimime -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_ncbimime.log.new: No such file or directory. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C pcsubstance -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -C pcassay -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay TMPL=pcassay -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay TMPL=pcassay -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialimpl.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay___.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -C gbseq -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq TMPL=gbseq -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq TMPL=gbseq -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_gbseq.log.new: No such file or directory. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -C insdseq -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq TMPL=insdseq -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq TMPL=insdseq -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -C tinyseq -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -C biotree -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh biotree all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree TMPL=biotree -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree TMPL=biotree -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -C entrezgene -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialimpl.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -C omssa -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh omssa all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa TMPL=omssa -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa TMPL=omssa -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -C remap -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh remap all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remap -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remapcli -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remap -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.remap.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap TMPL=remapcli -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -C seqtest -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest TMPL=seqtest -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest TMPL=seqtest -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -C taxon1 -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1 && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialdef.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/impl/typeref.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serial.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/cache.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/utils.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/ctreecont.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/ctreecont.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -C taxon3 -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3 && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialimpl.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3___.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -C gbproj -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj TMPL=gbproj -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj TMPL=gbproj -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/submit/submit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -C trackmgr -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -C valerr -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh valerr all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr TMPL=valerr -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr TMPL=valerr -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -C valid -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh valid all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid TMPL=valid -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid TMPL=valid -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid__.cpp:3: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid/Comment_set.cpp: In static member function 'static std::vector > ncbi::objects::CComment_set::GetFieldNames(const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid/Comment_set.cpp:158:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException ) { ^~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.valid.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -C access -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh access all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access TMPL=access -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access TMPL=access -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access/access__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access/access__.cpp -o access__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.access.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -C docsum -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh docsum all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum TMPL=docsum -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum TMPL=docsum -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_docsum.log.new: No such file or directory. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -C featdef -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh featdef all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef TMPL=featdef -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef TMPL=featdef -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -C genomecoll -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/make_asn.lock/usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' . Acquired /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 141813 (make_asn) Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.17.0 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -C gc_cli -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O gc_cli.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o gc_cli strip gc_cli /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/gc_cli gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -C homologene -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh homologene all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene TMPL=homologene -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene TMPL=homologene -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_homologene.log.new: No such file or directory. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -C mim -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh mim all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim TMPL=mim -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim TMPL=mim -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.mim.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -C objprt -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh objprt all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt TMPL=objprt -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt TMPL=objprt -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -C variation -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh variation all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.17.0 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation TMPL=variation -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation TMPL=variation -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.17.0 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialimpl.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation/VariantPlacement_.cpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation___.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.variation.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -C macro -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh macro all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro TMPL=macro -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro TMPL=macro -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::__cxx11::string&, const string&, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_ReplaceNocase(std::__cxx11::string&, const string&, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'bool ncbi::objects::CString_constraint::x_DoesSingleStringMatchConstraint(const string&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:610:86: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:610:86: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:620:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:620:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:639:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:639:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(search, pattern, pFound + 1, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:647:86: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(pattern, search, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:647:86: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(pattern, search, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:653:113: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(pattern.substr(pFound + 1), search, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/String_constraint.cpp:653:113: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pFound = NStr::Find(pattern.substr(pFound + 1), search, 0, NPOS, NStr::eFirst, case_sens); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialimpl.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/AECRParse_action_.cpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro___.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.macro.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -C genesbyloc -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -C coords -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m objcoords.asn -M "" -oA -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump datatool: 2.17.0 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords TMPL=objcoords -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords TMPL=objcoords -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m objcoords.asn -M "" -oA -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump datatool: 2.17.0 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_objcoords.log.new: No such file or directory. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -C varrep -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' cd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep && /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/new_module.sh varrep all Platform not defined for DragonFly x86_64 -- please fix me /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m varrep.asn -M "" -oA -oc varrep -or objects/varrep -odi -od varrep.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump datatool: 2.17.0 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep TMPL=varrep -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep TMPL=varrep -w all /usr/local/bin/gmake -w -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src -m varrep.asn -M "" -oA -oc varrep -or objects/varrep -odi -od varrep.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump datatool: 2.17.0 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep__.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.varrep.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C objmgr -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr TMPL=objmgr -w export-headers gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr TMPL=objmgr -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/objmgr_exception.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_setters.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_info.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_annot_info.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/table_field.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_id_sort.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for 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/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_setters.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/impl/bioseq_info.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_info.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE 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-Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/align_ci.cpp -o align_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_collector.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/data_loader.cpp -o data_loader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_objmgr.log.new: No such file or directory. edits_db_engine.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/test' /usr/local/bin/gmake -C util -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util TMPL=util -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util TMPL=util -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const ncbi::objects::CBioseq_Handle&, ncbi::objects::TWeights&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp:362:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/iterator.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TS2PFlags, ncbi::objects::CScope*, int*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp:703:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::ProductToSource(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TP2SFlags, ncbi::objects::CScope*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp:746:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp:751:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp: In member function 'ncbi::CRef ncbi::objects::SRelLoc::Resolve(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*, ncbi::objects::SRelLoc::TFlags) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp:4578:22: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/objistr.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp: In function 'ncbi::objects::feature::ELocationInFrame ncbi::objects::feature::IsLocationInFrame(const ncbi::objects::CSeq_feat_Handle&, const ncbi::objects::CSeq_loc&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp:3391:89: warning: 'ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)' is deprecated [-Wdeprecated-declarations] sequence::ECompare cmp = sequence::Compare(cds.GetLocation(), loc, &(cds.GetScope())); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/feature.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp:84: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp:3391:89: warning: 'ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)' is deprecated [-Wdeprecated-declarations] sequence::ECompare cmp = sequence::Compare(cds.GetLocation(), loc, &(cds.GetScope())); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/feature.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp:84: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/unicode.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CBioseqIndex::x_InitFeats()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:1030:20: warning: variable 'sgx' set but not used [-Wunused-but-set-variable] CGapIndex* sgx = NULL; ^~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:42: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/indexer.hpp: In constructor 'ncbi::objects::CGapIndex::CGapIndex(ncbi::TSeqPos, ncbi::TSeqPos, ncbi::TSeqPos, const string&, const std::vector >&, bool, bool, ncbi::objects::CBioseqIndex&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/indexer.hpp:576:10: warning: 'ncbi::objects::CGapIndex::m_IsAssemblyGap' will be initialized after [-Wreorder] bool m_IsAssemblyGap; ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/indexer.hpp:566:28: warning: 'ncbi::CWeakRef ncbi::objects::CGapIndex::m_Bsx' [-Wreorder] CWeakRef m_Bsx; ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:1362:1: warning: when initialized here [-Wreorder] CGapIndex::CGapIndex (TSeqPos start, ^~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:1835:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for (int i = 0; i < sizeof (mixedTags); i++) { ~~^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::__cxx11::string)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp:1912:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int i = 0; i < str.length(); i++) { ~~^~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/iterator.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seqtitle.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1137:80: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1137:80: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1716:61: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1716:61: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1782:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:1980:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2595:68: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2595:68: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2596:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (pos == idx + 2) { ~~~~^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2654:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2654:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp:2981:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/iterator.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp:605:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_align_util.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp:1805:81: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp:1733:57: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/autodef.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/autodef.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/autodef_source_desc.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/autodef.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Seq_descr.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/seq_descr_ci.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/seqdesc_ci.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Seq_descr.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/seq_descr_ci.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/seqdesc_ci.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_group.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/autodef.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp: In member function 'bool ncbi::objects::CAutoDefFeatureClause::x_GetExonDescription(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:725:28: warning: unused variable 'subtype' [-Wunused-variable] CSeqFeatData::ESubtype subtype = m_MainFeat.GetData().GetSubtype(); ^~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/autodef_options.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C split -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split TMPL=id2_split -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split TMPL=id2_split -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/split_exceptions.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.id2_split.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C objtools -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/unit_test_util/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/unit_test_util/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test_util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/lds2/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/lds2/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cddalignview/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT cddalignview/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/manip/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/manip/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT manip/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/validator/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/validator/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT validator/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/asniotest/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/asniotest/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT align/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/eutils/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/eutils/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/eutils/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT eutils/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/eutils/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/snputil/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/snputil/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT snputil/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/uudutil/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/uudutil/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/variation/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/variation/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT variation/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/writers/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/writers/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT writers/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /usr/local/bin/gmake -C unit_test_util -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /usr/local/bin/gmake -C readers -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/app/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/app/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT app/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjread -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjreadex -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjread -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/format_guess_ex.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnObjectChange()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp:562:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch(CException e){ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/aln_reader.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp:409:13: warning: comparison of integer expressions of different signedness: 'ncbi::CAlnReader::TNumrow' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (row > m_MiddleSections.size()) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/bed_reader.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::ILineReader&, ncbi::objects::CFastaReader::TFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:224:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::CNcbiIstream&, ncbi::objects::CFastaReader::TFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:234:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(const string&, ncbi::objects::CFastaReader::TFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:244:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::objects::CReaderBase::TReaderFlags, ncbi::objects::CFastaReader::TFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:254:29: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_MaxIDLength(kMax_UI4) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In destructor 'virtual ncbi::objects::CFastaReader::~CFastaReader()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:260:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:260:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:372:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp: In member function 'virtual void ncbi::objects::CFastaReader::ParseDefLine(const TStr&, ncbi::objects::ILineErrorListener*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:621:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = range_end - range_start; ^~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:621:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = range_end - range_start; ^~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:377:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiutil.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/gff_reader.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff_reader.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/microarray_reader.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp: In member function 'virtual bool ncbi::objects::CReaderBase::xIsTrackTerminator(const ncbi::CTempString&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp:652:45: warning: 'static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)' is deprecated [-Wdeprecated-declarations] auto line = NStr::TruncateSpaces(strLine); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2214:24: note: declared here static CTempString TruncateSpaces(const CTempString str, ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp:652:45: warning: 'static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)' is deprecated [-Wdeprecated-declarations] auto line = NStr::TruncateSpaces(strLine); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:2214:24: note: declared here static CTempString TruncateSpaces(const CTempString str, ^~~~~~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/line_error.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_sofa.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/read_util.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliaIn file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/readfeat.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeature_table_reader_imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeature_table_reader_imp::EQual, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/readfeat.cpp:1245:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] } catch( CStringException ) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/readfeat.cpp: In member function 'void ncbi::objects::CFeature_table_reader_imp::x_InitId(const string&, ncbi::objects::CFeature_table_reader::TFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/readfeat.cpp:3310:46: warning: enum constant in boolean context [-Wint-in-bool-context] (flags && CFeature_table_reader::fAllIdsAsLocal) ? CSeq_id::fParse_AnyLocal:CSeq_id::fParse_Default); ^~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/rm_reader.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/rm_reader.cpp:551:44: warning: enum constant in boolean context [-Wint-in-bool-context] if (fRemoveRedundancy && m_Library && ^~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp: In member function 'virtual bool ncbi::objects::CGff3Reader::xUpdateAnnotGeneric(const ncbi::objects::CGff2Record&, ncbi::CRef, ncbi::CRef, ncbi::objects::ILineErrorListener*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp:603:10: warning: unused variable 'st' [-Wunused-variable] auto st = pFeature->GetData().GetSubtype(); ^~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp: In member function 'virtual bool ncbi::objects::CGtfReader::x_UpdateAnnotCds(const ncbi::objects::CGff2Record&, ncbi::CRef)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp:363:10: warning: variable 'needXref' set but not used [-Wunused-but-set-variable] bool needXref = false; ^~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_data.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'virtual ncbi::CRef ncbi::objects::CGff2Reader::ReadSeqAnnot(ncbi::ILineReader&, ncbi::objects::ILineErrorListener*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp:217:30: warning: enum constant in boolean context [-Wint-in-bool-context] if ((m_iFlags && fGenbankMode) || ^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'virtual void ncbi::objects::CGff2Reader::xPostProcessAnnot(ncbi::CRef&, ncbi::objects::ILineErrorListener*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp:323:23: warning: enum constant in boolean context [-Wint-in-bool-context] if (!(m_iFlags && fGenbankMode)) { ^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1195:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1282:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] for (auto i=0; i)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1369:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] for (auto i=0; i DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_autoinit.hpp:46, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/source_mod_parser.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbitime.hpp:62, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_system.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbifile.hpp:46, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_converter.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ sing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o message_listener.o line_error.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjread.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers TMPL=xobjreadex -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/glimmer_reader.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -C app -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/app' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/app' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/test' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -C blast -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /usr/local/bin/gmake -C seqdb_reader -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In member function 'char* ncbi::CSeqDBAtlas::Alloc(size_t, ncbi::CSeqDBLockHold&, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:346:16: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] catch(std::bad_alloc) { ^~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:160:13: warning: 'void ncbi::s_SeqDB_FileNotFound(const string&)' defined but not used [-Wunused-function] static void s_SeqDB_FileNotFound(const string & fname) ^~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimtx.hpp:62, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*, ncbi::CSeqDBLockHold&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2623:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] TIndx map_end = 0; ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^~~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqdb.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seqdb_demo.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o seqdb_demo strip seqdb_demo /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/seqdb_demo gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seqdb_perf.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/seqdb_perf gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C seqdb_writer -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In constructor 'ncbi::CWriteDB_File::CWriteDB_File(const string&, const string&, int, Uint8, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:113:22: warning: unused variable 'MAX_OFFSET_BITS' [-Wunused-variable] static const int MAX_OFFSET_BITS = (sizeof m_Offset * 8) - 1; ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In member function 'int ncbi::CWriteDB_File::Write(const ncbi::CTempString&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:149:22: warning: unused variable 'MAX_OFFSET_BITS' [-Wunused-variable] static const int MAX_OFFSET_BITS = (sizeof m_Offset * 8) - 1; ^~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimtx.hpp:62, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbienv.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.writedb.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C gene_info_reader -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.gene_info.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O gene_info_reader_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/gene_info_reader gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C gene_info_writer -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /usr/local/bin/gmake -C services -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blast_services.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C blastdb_format -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config /* = CSeqFormatterConfig() */) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp: In member function 'std::__cxx11::string ncbi::CBlastDBExtractor::ExtractLeafTaxIds()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:396:24: warning: variable 'taxids_iter' set but not used [-Wunused-but-set-variable] set::iterator taxids_iter = taxids.begin(); ^~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/blast' /usr/local/bin/gmake -C lds2 -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/lds2' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/lds2' /usr/local/bin/gmake -C data_loaders -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT patcher/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT cdd/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /usr/local/bin/gmake -C genbank -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT pubseq/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w export-headers gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w export-headers gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp /usr/bin/c++ -std=gnu++11 -shared -o libncbi_xreader-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp /usr/bin/c++ -std=gnu++11 -shared -o libncbi_xloader_genbank-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC gbloader.o gbload_util.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C cache -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w export-headers gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp /usr/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_cache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_cache.o writer_cache.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -C pubseq -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/local/bin/gmake -C id2 -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w export-headers gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp /usr/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_id2-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_id2.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -C id1 -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w export-headers gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp /usr/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_id1-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_id1.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -C pubseq2 -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/local/bin/gmake -C gicache -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w export-headers gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DataToGiData': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:273:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_LoadAdd': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:618:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_SetMeta': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:816:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:816:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_GetAccFreqTab': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:967:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GiDataIndex_New': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:190:71: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to access file (%s): %s\n", data_index->m_FileName, strerror(rc)); ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:190:4: note: 'snprintf' output 38 or more bytes (assuming 1061) into a destination of size 256 snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to access file (%s): %s\n", data_index->m_FileName, strerror(rc)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:225:71: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 222 [-Wformat-truncation=] snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to open LMDB db (%s): %s\n", data_index->m_FileName, mdb_strerror(rc)); ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:225:3: note: 'snprintf' output 39 or more bytes (assuming 1062) into a destination of size 256 snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to open LMDB db (%s): %s\n", data_index->m_FileName, mdb_strerror(rc)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp /usr/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_gicache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_gicache.o gicache.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -L/usr/local/lib -llmdb -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C lds2 -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /usr/local/bin/gmake -C blastdb -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w export-headers gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w export-headers gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_ncbi_xloader_blastdb.log.new: No such file or directory. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C patcher -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /usr/local/bin/gmake -C asn_cache -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /usr/local/bin/gmake -C cdd -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /usr/local/bin/gmake -C simple -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/simple/simple_om.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -C alnmgr -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp:1467:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ~~~~^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ match1->m_Score > match2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand1 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 != eNa_strand_minus)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare] if (start_its_i->second->first != -1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:752:44: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] while(start < start2 + len * width2) { ~~~~^~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::__cxx11::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::__cxx11::string&, const TSignedRange&, bool) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (translate && aln_range.GetLength() >= trim_from + trim_to) { ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alntext.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_alnmgr.log.new: No such file or directory. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc 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-Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C cddalignview -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cddalignview' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/test' /usr/local/bin/gmake -C manip -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/manip' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/manip' /usr/local/bin/gmake -C cleanup -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp:2623:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (abs((long int)this_start - (long int)prev_end) < min_len) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_autoinit.hpp:46, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7071:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { ~~~~~~~~~~^~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7085:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if( first_pos > last_pos ) { ~~~~~~~~~~^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:8276:10: warning: unused variable 'changed' [-Wunused-variable] bool changed = false; ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnaFeatBC(ncbi::objects::CRNA_ref&, ncbi::objects::CSeq_feat&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:9168:102: warning: enum constant in boolean context [-Wint-in-bool-context] (rna.GetType() == CRNA_ref::eType_mRNA || rna.GetType() == CRNA_ref::eType_rRNA || CRNA_ref::eType_tRNA) && ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_FixStructuredCommentKeywords(ncbi::objects::CBioseq&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:10153:22: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:10155:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C format -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format TMPL=xformat -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format TMPL=xformat -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/accession_item.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::__cxx11::string&, const ncbi::objects::CUser_object&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp:367:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/dbsource_item.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/defline_item.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp:44: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp:1815:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CFeatureItem::x_SeqIdWriteForTable(const ncbi::objects::CBioseq&, bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp:5031:20: warning: variable 'patent' set but not used [-Wunused-but-set-variable] const CSeq_id* patent = NULL; ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp:5032:20: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] const CSeq_id* pdb = NULL; ^~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ctrl_items.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/keywords_item.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/keywords_item.cpp: In member function 'virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/keywords_item.cpp:286:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/locus_item.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (this_start < (15 + last_stop) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/reference_item.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sequence_item.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp:325:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'unsigned int' [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/accession_item.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp:1050:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/context.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:1029:34: warning: unused variable 'format' [-Wunused-variable] CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_CollectBioSources(ncbi::objects::CFlatGatherer::TSourceFeatSet&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:1798:13: warning: unused variable 'scope' [-Wunused-variable] CScope* scope = &ctx.GetScope(); ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp:759:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_gather.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_gather.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:258:10: warning: unused variable 'nearFeatsSuppress' [-Wunused-variable] bool nearFeatsSuppress = false; ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:261:10: warning: variable 'isNgNtNwNz' set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:262:10: warning: variable 'isGED' set but not used [-Wunused-but-set-variable] bool isGED = false; ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp:263:10: warning: variable 'isTPA' set but not used [-Wunused-but-set-variable] bool isTPA = false; ^~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_formatter.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_formatter.cpp:1963:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] } catch (CSeqVectorException) { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_formatter.cpp:2011:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] } catch (CSeqVectorException) { ^~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_gather.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/format/flat_file_config.hpp:34, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_config.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sam_formatter.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/cigar_formatter.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/format/gather_iter.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_iter.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/scope.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gene_finder.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/context.cpp -o context.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFIn file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ FSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xformat.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -C edit -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/protein_match/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/protein_match/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/protein_match/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT protein_match/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit TMPL=edit -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit TMPL=edit -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gene_utils.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:172:44: warning: array subscript has type 'char' [-Wchar-subscripts] while (descr_insert_order[index] != 0) ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:45: warning: array subscript has type 'char' [-Wchar-subscripts] if (descr_insert_order[index] >= size()) ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:47: warning: comparison of integer expressions of different signedness: 'char' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (descr_insert_order[index] >= size()) ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:175:52: warning: array subscript has type 'char' [-Wchar-subscripts] resize(descr_insert_order[index], kMax_Char); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:176:44: warning: array subscript has type 'char' [-Wchar-subscripts] at(descr_insert_order[index]) = index; ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1823:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ~~~~~~^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1825:74: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ~~~~~~^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1848:63: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ~~~~~~^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1850:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ~~~~~~^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] switch (seqmap_ci.GetType()) { ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] if (pos >= start && pos < start + len) { ~~~~^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] if (pos >= start && pos < start + len) { ~~~~^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2989:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] else if (seg_start < cut_from) { ~~~~~~~~~~^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2992:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] else if (seg_start >= cut_from && ~~~~~~~~~~^~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] remove_trailingX); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp:52: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:931:17: note: declared here static void TranslateCdregion(string& prot, ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] remove_trailingX); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp:52: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:931:17: note: declared here static void TranslateCdregion(string& prot, ^~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/autodef_with_tax.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/field_handler.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp: In static member function 'static bool ncbi::objects::edit::CStructuredCommentField::IsValid(const ncbi::objects::CUser_object&, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp:496:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp: In static member function 'static void ncbi::objects::edit::CStructuredCommentField::ReorderFields(ncbi::objects::CUser_object&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp:515:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] int best_fit_size = -1; ^~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustProteinFeaturePartialsToMatchCDS(ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_feat&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:409:63: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:409:63: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:482:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:482:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:488:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:488:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:364:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:548:56: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:449:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:548:56: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:449:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'void ncbi::objects::edit::s_AdjustForUTR(const ncbi::objects::CSeq_feat&, int, int, ncbi::objects::CSeq_loc&, bool&, bool&, ncbi::objects::CScope&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:644:65: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:649:64: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (utr.GetLocation().GetStop(eExtreme_Positional) != cd_start - 1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:659:64: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (utr.GetLocation().GetStop(eExtreme_Positional) != cd_start - 1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp:664:65: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::CapitalizeAfterApostrophe(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp:905:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rslt[0] != start) ~~~~~~~~^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::FixAffiliationShortWordsInElement(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp:944:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rslt[0] != start) ~~~~~~~~^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp: In function 'void ncbi::objects::edit::FixOrdinalNumbers(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp:971:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rslt[0] != start) ~~~~~~~~^~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp: In member function 'bool ncbi::objects::edit::CLocationEditPolicy::ApplyPolicyToFeature(ncbi::objects::CSeq_feat&, ncbi::objects::CScope&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:550:59: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:550:59: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:62:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp: In function 'bool ncbi::objects::edit::ApplyPolicyToFeature(const ncbi::objects::edit::CLocationEditPolicy&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:773:69: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:65:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:773:69: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:65:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:774:117: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(*new_feat, scope.GetBioseqHandle(new_feat->GetLocation()).GetSeq_entry_Handle()); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:64:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh); ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:774:117: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(*new_feat, scope.GetBioseqHandle(new_feat->GetLocation()).GetSeq_entry_Handle()); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/cds_fix.hpp:64:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh); ^~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/mail_report.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Object_id_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/general/Object_id.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/feattable_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/source_edit.cpp:32: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int j = i + 1; j < spans.size(); j++) ~~^~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/Org_ref.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon3/itaxon3.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/remote_updater.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:5473:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gene_utils.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/capitalization_string.cpp -o capitalization_string.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTEIn file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gap_trim.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ RNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o capitalization_string.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C protein_match -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/demo' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/demo' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C validator -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/validator' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/validator' /usr/local/bin/gmake -C asniotest -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/asniotest' /usr/local/bin/gmake -C align -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align' /usr/local/bin/gmake -C seqmasks_io -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Bioseq.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C eutils -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/eutils' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/eutils' /usr/local/bin/gmake -C align_format -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format TMPL=align_format -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format TMPL=align_format -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showdefline.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimtx.hpp:62, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbireg.hpp:50, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/align_format/align_format_util.hpp:32, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp:2044:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException e){ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp:4355:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp:4355:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/tabular.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/aln_printer.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/aln_printer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/format_flags.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.align_format.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C snputil -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/snputil' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/snputil' /usr/local/bin/gmake -C uudutil -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/uudutil' /usr/local/bin/gmake -C variation -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/variation' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/variation' /usr/local/bin/gmake -C writers -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/writers' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools/writers' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/objtools' /usr/local/bin/gmake -C ctools -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/ctools' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/ctools' /usr/local/bin/gmake -C sra -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sra' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sra' /usr/local/bin/gmake -C algo -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/sequence/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/sequence/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT sequence/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/sequence/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/align/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/align/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT align/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/align/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/structure/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/structure/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT structure/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/structure/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/ms/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/ms/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/ms/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT ms/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/ms/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/gnomon/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/gnomon/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/tree/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/tree/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT tree/Makefile config.status: creating 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/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/seqqa/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT seqqa/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/cobalt/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/cobalt/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/text/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/text/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT text/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/text/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/volume_merge/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/volume_merge/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/primer/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/primer/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT primer/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/primer/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/id_mapper/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/id_mapper/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /usr/local/bin/gmake -C dustmask -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask/symdust.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -C winmask -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/c++ -s/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ~^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Bioseq.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seq/Bioseq.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/winmask/win_mask_config.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp: In static member function 'static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(type == eAny || type >= eGenerateMasksWithDuster) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' arg_desc.AddDefaultKey( "dust_level", "dust_level", ^~~~~~~~ td=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -C sequence -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/sequence' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/sequence' /usr/local/bin/gmake -C blast -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT dbindex_search/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT blast_sra_input/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /usr/local/bin/gmake -C composition_adjustment -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^~~~~~~~~~~~~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -C core -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core TMPL=blast -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core TMPL=blast -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/spliced_hits.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_program.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_posit.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_lookup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/pattern.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_encoding.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/ncbi_math.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/ncbi_std.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/matrix_freq_ratios.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/lookup_wrap.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/lookup_util.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/link_hsps.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/aa_ungapped.c. /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-alias/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return 0; ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/link_hsps.c: In function 's_FwdCompareHSPs': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/link_hsps.c:133:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (h1->query.offset < h2->query.offset) ^~ ing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blast.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -C dbindex -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbitime.hpp:62, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_system.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbifile.hpp:46, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:39: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/object_manager.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. /usr/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C makeindex -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o mkindex_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o makembindex strip makembindex /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/makembindex gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C dbindex_search -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /usr/local/bin/gmake -C api -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api TMPL=xblast -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api TMPL=xblast -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux.cpp. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for .core_spliced_hits.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c Updating dependency information for .core_hspfilter_mapper.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c Updating dependency information for .core_jumper.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c Updating dependency information for .core_boost_erf.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c Updating dependency information for .core_blast_hspstream_mt_utils.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c Updating dependency information for .core_blast_traceback_mt_priv.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c Updating dependency information for .core_index_ungapped.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c Updating dependency information for .core_gencode_singleton.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c Updating dependency information for .core_split_query.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c Updating dependency information for .core_blast_dynarray.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c Updating dependency information for .core_blast_sw.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c Updating dependency information for .core_blast_tune.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c Updating dependency information for .core_blast_query_info.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c Updating dependency information for .core_blast_program.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c Updating dependency information for .core_blast_posit.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c Updating dependency information for .core_blast_parameters.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c Updating dependency information for .core_phi_lookup.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c Updating dependency information for .core_phi_gapalign.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c Updating dependency information for .core_phi_extend.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c Updating dependency information for .core_pattern.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c Updating dependency information for .core_blast_encoding.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c Updating dependency information for .core_ncbi_math.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c Updating dependency information for .core_ncbi_std.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c Updating dependency information for .core_matrix_freq_ratios.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c Updating dependency information for .core_lookup_wrap.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c Updating dependency information for .core_lookup_util.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c Updating dependency information for .core_link_hsps.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c Updating dependency information for .core_hspfilter_culling.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c Updating dependency information for .core_hspfilter_besthit.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c Updating dependency information for .core_hspfilter_collector.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c Updating dependency information for .core_greedy_align.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c Updating dependency information for .core_gapinfo.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c Updating dependency information for .core_blast_util.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c Updating dependency information for .core_blast_traceback.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c Updating dependency information for .core_blast_stat.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c Updating dependency information for .core_blast_setup.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c Updating dependency information for .core_blast_seqsrc.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c Updating dependency information for .core_blast_seg.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c Updating dependency information for .core_blast_psi_priv.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c Updating dependency information for .core_na_ungapped.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c Updating dependency information for .core_blast_psi.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c Updating dependency information for .core_blast_options.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c Updating dependency information for .core_blast_message.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c Updating dependency information for .core_blast_nascan.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c Updating dependency information for .core_blast_nalookup.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c Updating dependency information for .core_blast_aascan.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c Updating dependency information for .core_blast_aalookup.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c Updating dependency information for .core_blast_lookup.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c Updating dependency information for .core_blast_kappa.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c Updating dependency information for .core_blast_itree.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c Updating dependency information for .core_blast_hspstream.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c Updating dependency information for .core_blast_hits.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c Updating dependency information for .core_blast_gapalign.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c Updating dependency information for .core_blast_filter.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c Updating dependency information for .core_blast_extend.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c Updating dependency information for .core_blast_engine.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c Updating dependency information for .core_blast_diagnostics.c. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_aa_ungapped.c. rm .core_blast_nascan.c .core_blast_diagnostics.c .core_blast_sw.c .core_split_query.c .core_hspfilter_collector.c .core_blast_query_info.c .core_blast_traceback_mt_priv.c .core_jumper.c .core_blast_engine.c .core_blast_util.c .core_blast_aascan.c .core_blast_dynarray.c .core_blast_posit.c .core_na_ungapped.c .core_blast_setup.c .core_blast_hits.c .core_blast_traceback.c .core_matrix_freq_ratios.c .core_ncbi_std.c .core_boost_erf.c .core_phi_extend.c .core_link_hsps.c .core_phi_lookup.c .core_blast_extend.c .core_blast_lookup.c .core_blast_kappa.c .core_blast_psi.c .core_phi_gapalign.c .core_blast_encoding.c .core_spliced_hits.c .core_blast_gapalign.c .core_pattern.c .core_blast_hspstream.c .core_blast_psi_priv.c .core_hspfilter_mapper.c .core_gencode_singleton.c .core_lookup_wrap.c .core_blast_filter.c .core_blast_message.c .core_aa_ungapped.c .core_hspfilter_culling.c .core_blast_options.c .core_blast_seqsrc.c .core_blast_stat.c .core_blast_aalookup.c .core_blast_parameters.c .core_ncbi_math.c .core_blast_tune.c .core_greedy_align.c .core_blast_itree.c .core_blast_hspstream_mt_utils.c .core_hspfilter_besthit.c .core_gapinfo.c .core_index_ungapped.c .core_lookup_util.c .core_blast_seg.c .core_blast_nalookup.c .core_blast_program.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_aa_ungapped.c -o .core_aa_ungapped.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_diagnostics.c -o .core_blast_diagnostics.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_engine.c -o .core_blast_engine.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_extend.c -o .core_blast_extend.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_filter.c -o .core_blast_filter.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_gapalign.c -o .core_blast_gapalign.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_hits.c -o .core_blast_hits.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_hspstream.c -o .core_blast_hspstream.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_itree.c -o .core_blast_itree.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_kappa.c -o .core_blast_kappa.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_lookup.c -o .core_blast_lookup.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_aalookup.c -o .core_blast_aalookup.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_aascan.c -o .core_blast_aascan.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_nalookup.c -o .core_blast_nalookup.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blIn file included from .core_blast_util.c:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_util.c: In function 'BlastProgram2Number': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return 0; ^~~~~~ In file included from .core_link_hsps.c:1: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/link_hsps.c: In function 's_FwdCompareHSPs': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/link_hsps.c:133:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (h1->query.offset < h2->query.offset) ^~ ast-2.7.1+-src/c++/include .core_blast_nascan.c -o .core_blast_nascan.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_message.c -o .core_blast_message.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_options.c -o .core_blast_options.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_psi.c -o .core_blast_psi.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_na_ungapped.c -o .core_na_ungapped.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_psi_priv.c -o .core_blast_psi_priv.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_seg.c -o .core_blast_seg.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_seqsrc.c -o .core_blast_seqsrc.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_setup.c -o .core_blast_setup.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_stat.c -o .core_blast_stat.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_traceback.c -o .core_blast_traceback.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_util.c -o .core_blast_util.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_gapinfo.c -o .core_gapinfo.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_greedy_align.c -o .core_greedy_align.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_collector.c -o .core_hspfilter_collector.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_culling.c -o .core_hspfilter_culling.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_link_hsps.c -o .core_link_hsps.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_lookup_util.c -o .core_lookup_util.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_lookup_wrap.c -o .core_lookup_wrap.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_ncbi_std.c -o .core_ncbi_std.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_ncbi_math.c -o .core_ncbi_math.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_encoding.c -o .core_blast_encoding.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_pattern.c -o .core_pattern.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbiIn file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function 'bool ncbi::blast::CBlastOptionsLocal::Validate() const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:387:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:396:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' return true; ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbitime.hpp:62, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_system.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbifile.hpp:46, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/util/util_misc.hpp:33, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:1193:34: note: in expansion of macro 'THROWS' THROWS((CBlastException)) ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:1241:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)) ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:173:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ -blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_phi_extend.c -o .core_phi_extend.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_phi_gapalign.c -o .core_phi_gapalign.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_phi_lookup.c -o .core_phi_lookup.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_parameters.c -o .core_blast_parameters.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_posit.c -o .core_blast_posit.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_program.c -o .core_blast_program.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_query_info.c -o .core_blast_query_info.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_tune.c -o .core_blast_tune.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_sw.c -o .core_blast_sw.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_dynarray.c -o .core_blast_dynarray.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_split_query.c -o .core_split_query.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_gencode_singleton.c -o .core_gencode_singleton.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_index_ungapped.c -o .core_index_ungapped.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_boost_erf.c -o .core_boost_erf.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_jumper.c -o .core_jumper.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /usr/bin/cc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include .core_spliced_hits.c -o .core_spliced_hits.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGIn file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/tblastx_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/tblastn_options.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/query_data.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/bl2seq.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/bl2seq.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/seq_vector.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/iterator.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/query_data.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ EFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/co/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/query_data.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/setup_factory.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/query_data.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/query_data.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ nstruction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/seedtop.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seedtop.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/deltablast_options.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:332:26: note: in expansion of macro 'THROWS' THROWS((CBlastException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/blast_setup.hpp:353:48: note: in expansion of macro 'THROWS' Uint1 GetSentinelByte(EBlastEncoding encoding) THROWS((CBlastException)); ^~~~~~ c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_phi_gapalign.c .core_ncbi_math.c .core_blast_posit.c .core_index_ungapped.c .core_blast_traceback.c .core_blast_itree.c .core_ncbi_std.c .core_boost_erf.c .core_phi_extend.c .core_link_hsps.c .core_phi_lookup.c .core_split_query.c .core_hspfilter_besthit.c .core_blast_seg.c .core_blast_filter.c .core_blast_tune.c .core_blast_psi_priv.c .core_blast_seqsrc.c .core_blast_diagnostics.c .core_hspfilter_culling.c .core_blast_options.c .core_greedy_align.c .core_lookup_util.c .core_blast_aascan.c .core_gencode_singleton.c .core_blast_parameters.c .core_blast_hspstream_mt_utils.c .core_blast_kappa.c .core_blast_nalookup.c .core_na_ungapped.c .core_blast_sw.c .core_blast_message.c .core_blast_hspstream.c .core_blast_util.c .core_gapinfo.c .core_blast_dynarray.c .core_blast_extend.c .core_blast_stat.c .core_blast_hits.c .core_pattern.c .core_blast_aalookup.c .core_blast_psi.c .core_blast_program.c .core_jumper.c .core_blast_encoding.c .core_matrix_freq_ratios.c .core_blast_traceback_mt_priv.c .core_spliced_hits.c .core_lookup_wrap.c .core_hspfilter_mapper.c .core_blast_gapalign.c .core_blast_nascan.c .core_blast_engine.c .core_blast_lookup.c .core_aa_ungapped.c .core_blast_query_info.c .core_blast_setup.c .core_hspfilter_collector.c gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_xblast.log.new: No such file or directory. c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_phi_gapalign.c .core_ncbi_math.c .core_blast_posit.c .core_index_ungapped.c .core_blast_traceback.c .core_blast_itree.c .core_ncbi_std.c .core_boost_erf.c .core_phi_extend.c .core_link_hsps.c .core_phi_lookup.c .core_split_query.c .core_hspfilter_besthit.c .core_blast_seg.c .core_blast_filter.c .core_blast_tune.c .core_blast_psi_priv.c .core_blast_seqsrc.c .core_blast_diagnostics.c .core_hspfilter_culling.c .core_blast_options.c .core_greedy_align.c .core_lookup_util.c .core_blast_aascan.c .core_gencode_singleton.c .core_blast_parameters.c .core_blast_hspstream_mt_utils.c .core_blast_kappa.c .core_blast_nalookup.c .core_na_ungapped.c .core_blast_sw.c .core_blast_message.c .core_blast_hspstream.c .core_blast_util.c .core_gapinfo.c .core_blast_dynarray.c .core_blast_extend.c .core_blast_stat.c .core_blast_hits.c .core_pattern.c .core_blast_aalookup.c .core_blast_psi.c .core_blast_program.c .core_jumper.c .core_blast_encoding.c .core_matrix_freq_ratios.c .core_blast_traceback_mt_priv.c .core_spliced_hits.c .core_lookup_wrap.c .core_hspfilter_mapper.c .core_blast_gapalign.c .core_blast_nascan.c .core_blast_engine.c .core_blast_lookup.c .core_aa_ungapped.c .core_blast_query_info.c .core_blast_setup.c .core_hspfilter_collector.c gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -C proteinkmer -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w all /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:431: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:791:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (last_oid == *i) ~~~~~~~~~^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:91: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:98: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (hits.size() < numHashes) ~~~~~~~~~~~~^~~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[8]: *** No rule to make target '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -C format -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/object_manager.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/object_manager.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1099:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/object_manager.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbimisc.hpp:1099:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/object_manager.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/blast_format.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:49: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:51: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp:520:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if(count >= m_NumSummary) ~~~~~~^~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/blast_options.hpp:171:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/blast_format.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/object_manager.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:122:28: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (m_ResultsMap.size() != currNum) ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -C blastinput -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/serial/iterator.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/util/sequence.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blastinput.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C unit_test -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C blast_sra_input -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /usr/local/bin/gmake -C igblast -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast/igblast.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.igblast.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/bin/awk: can't open file make_igblast.log.new source line number 4 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast/igblast.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.igblast.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -C gumbel_params -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /usr/local/bin/gmake -C unit_tests -w all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' /usr/local/bin/gmake -C blast_format -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /usr/local/bin/gmake -C blastdb -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /usr/local/bin/gmake -C seqdb_reader -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /usr/local/bin/gmake -C api -w all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w mark-as-disabled gmake[9]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w mark-as-disabled gmake[9]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/blast' /usr/local/bin/gmake -C segmask -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w export-headers gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/segmask/segmask.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -C align -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/align' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/align' /usr/local/bin/gmake -C structure -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/structure' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/structure' /usr/local/bin/gmake -C ms -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/ms' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/ms' /usr/local/bin/gmake -C gnomon -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/gnomon' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/gnomon' /usr/local/bin/gmake -C tree -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/tree' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/tree' /usr/local/bin/gmake -C phy_tree -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/phy_tree' /usr/local/bin/gmake -C seqqa -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/seqqa' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/seqqa' /usr/local/bin/gmake -C cobalt -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/cobalt' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/cobalt' /usr/local/bin/gmake -C text -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/text' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/text' /usr/local/bin/gmake -C volume_merge -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/volume_merge' /usr/local/bin/gmake -C primer -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/primer' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/primer' /usr/local/bin/gmake -C id_mapper -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/algo' /usr/local/bin/gmake -C misc -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/clog/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/clog/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT clog/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/clog/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/grid_cgi/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/grid_cgi/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT grid_cgi/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/xmlwrapp/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/eutils_client/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/eutils_client/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT eutils_client/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/hydra_client/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/hydra_client/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT hydra_client/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/discrepancy/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/discrepancy/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/xmlreaders/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/xmlreaders/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT xmlreaders/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/hgvs/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/hgvs/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT hgvs/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/netstorage/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/netstorage/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/jsonwrapp/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/jsonwrapp/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/jsonwrapp/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT jsonwrapp/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/biosample_util/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/biosample_util/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT biosample_util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/data_loaders_util/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/data_loaders_util/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT data_loaders_util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/lapackwrapp/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/pmcidconv_client/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT pmcidconv_client/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/grpc_integration/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/grpc_integration/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/grpc_integration/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT grpc_integration/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grpc_integration/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/misc/cgi_redirect/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /usr/local/bin/gmake -C third_party -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party' /usr/local/bin/gmake -C third_party_static -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/third_party_static' /usr/local/bin/gmake -C clog -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/clog' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/clog' /usr/local/bin/gmake -C grid_cgi -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grid_cgi' /usr/local/bin/gmake -C xmlwrapp -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' /usr/local/bin/gmake -C eutils_client -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/eutils_client' /usr/local/bin/gmake -C hydra_client -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hydra_client' /usr/local/bin/gmake -C discrepancy -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/discrepancy' /usr/local/bin/gmake -C xmlreaders -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/xmlreaders' /usr/local/bin/gmake -C hgvs -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hgvs' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/hgvs' /usr/local/bin/gmake -C netstorage -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/netstorage' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/netstorage' /usr/local/bin/gmake -C jsonwrapp -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /usr/local/bin/gmake -C biosample_util -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/biosample_util' /usr/local/bin/gmake -C data_loaders_util -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' /usr/local/bin/gmake -C lapackwrapp -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' /usr/local/bin/gmake -C pmcidconv_client -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' /usr/local/bin/gmake -C grpc_integration -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grpc_integration' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/grpc_integration' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C cgi_redirect -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/misc' /usr/local/bin/gmake -C gui -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/gui' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/gui' /usr/local/bin/gmake -C app -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app' /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asn2asn/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asn2asn/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn2asn/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2asn/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asn2fasta/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asn2fasta/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn2fasta/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2fasta/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asn2flat/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asn2flat/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT asn2flat/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2flat/Makefile /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asnval/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/asnval/Makefile.in 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/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idfetch/Makefile /usr/local/bin/gmake -C asn2asn -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2asn' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2asn' /usr/local/bin/gmake -C asn2fasta -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2fasta' /usr/local/bin/gmake -C asn2flat -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2flat' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn2flat' /usr/local/bin/gmake -C asnval -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asnval' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asnval' /usr/local/bin/gmake -C asn_cleanup -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cleanup' /usr/local/bin/gmake -C id1_fetch -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id1_fetch' /usr/local/bin/gmake -C blast -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/legacy_blast.pl /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/legacy_blast.pl /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast -w all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/update_blastdb.pl /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/update_blastdb.pl /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blast_app_util -w export-headers gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blast_app_util -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objmgr/object_manager.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_app_util.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_app_util.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_app_util.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blastp -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastp_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastp_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastp_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastp strip blastp /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastp /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastp gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blastn -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastn_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastn_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastn_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastn strip blastn /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastn gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blastx -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastx_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastx_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastx_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastx strip blastx /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastx /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastx gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=tblastn -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastn_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastn_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O tblastn_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o tblastn strip tblastn /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/tblastn gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=tblastx -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastx_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastx_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O tblastx_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o tblastx strip tblastx /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/tblastx gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=psiblast -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/psiblast_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/psiblast_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O psiblast_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o psiblast strip psiblast /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/psiblast gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=rpsblast -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpsblast_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpsblast_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O rpsblast_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o rpsblast strip rpsblast /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/rpsblast gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=rpstblastn -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpstblastn_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O rpstblastn_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o rpstblastn strip rpstblastn /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/rpstblastn gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=blast_formatter -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_formatter.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_formatter.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blast_formatter.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blast_formatter strip blast_formatter /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blast_formatter gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=deltablast -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/deltablast_app.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/deltablast_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O deltablast_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o deltablast strip deltablast /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/deltablast gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast TMPL=seedtop -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/seedtop_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/seedtop_app.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seedtop_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o seedtop strip seedtop /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/seedtop gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -C convert_seq -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/convert_seq' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/convert_seq' /usr/local/bin/gmake -C nmer_repeats -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nmer_repeats' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nmer_repeats' /usr/local/bin/gmake -C objmgr -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objmgr' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objmgr' /usr/local/bin/gmake -C gi2taxid -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gi2taxid' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gi2taxid' /usr/local/bin/gmake -C netschedule -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netschedule' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netschedule' /usr/local/bin/gmake -C grid -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/grid' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/grid' /usr/local/bin/gmake -C netstorage -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netstorage' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netstorage' /usr/local/bin/gmake -C igblast -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/igblast' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/igblast' /usr/local/bin/gmake -C winmasker -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker TMPL=winmasker -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objtools/readers/fasta.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/main.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o win_mask_app.o win_mask_sdust_masker.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o windowmasker strip windowmasker /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/windowmasker gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -C dustmasker -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker TMPL=dustmasker -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/main.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o dust_mask_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o dustmasker strip dustmasker /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/dustmasker gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -C segmasker -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/segmasker TMPL=segmasker -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/segmasker/segmasker.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/segmasker/segmasker.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O segmasker.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o segmasker strip segmasker /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/segmasker gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -C blastdb -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdbcmd -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcmd.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcmd.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdbcmd strip blastdbcmd /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdbcmd gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=makeblastdb -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/version.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/algo/blast/api/version.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/masked_range_set.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeblastdb.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O makeblastdb.o masked_range_set.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o makeblastdb strip makeblastdb /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/makeblastdb gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdb_aliastool.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdb_aliastool strip blastdb_aliastool /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdb_aliastool.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdb_aliastool strip blastdb_aliastool /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdbcheck -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcheck.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcheck.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdbcheck strip blastdbcheck /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdbcheck gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=convert2blastmask -w all In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/corelib/ncbiexpt.hpp:71:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] # define THROWS(x) throw x ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include/objects/seqfeat/SubSource.hpp:103:67: note: in expansion of macro 'THROWS' static CRef DateFromCollectionDate (const string& str) THROWS((CException)); ^~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/convert2blastmask.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O convert2blastmask.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o convert2blastmask strip convert2blastmask /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/convert2blastmask gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=blastdbcp -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcp.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcp.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdbcp strip blastdbcp /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/blastdbcp gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb TMPL=makeprofiledb -w all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeprofiledb.cpp. /usr/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/c++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O makeprofiledb.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o makeprofiledb strip makeprofiledb /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/makeprofiledb gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -C vecscreen -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/vecscreen' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/vecscreen' /usr/local/bin/gmake -C agpconvert -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agpconvert' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agpconvert' /usr/local/bin/gmake -C id2_fetch -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id2_fetch' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/id2_fetch' /usr/local/bin/gmake -C agp_validate -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agp_validate' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/agp_validate' /usr/local/bin/gmake -C objextract -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objextract' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/objextract' /usr/local/bin/gmake -C bdb_env_keeper -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /usr/local/bin/gmake -C nw_aligner -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nw_aligner' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/nw_aligner' /usr/local/bin/gmake -C speedtest -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/speedtest' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/speedtest' /usr/local/bin/gmake -C idmapper -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idmapper' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idmapper' /usr/local/bin/gmake -C formatguess -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/formatguess' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/formatguess' /usr/local/bin/gmake -C multireader -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/multireader' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/multireader' /usr/local/bin/gmake -C read_blast_result -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/read_blast_result' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/read_blast_result' /usr/local/bin/gmake -C splign -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/splign' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/splign' /usr/local/bin/gmake -C hfilter -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/hfilter' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/hfilter' /usr/local/bin/gmake -C annotwriter -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/annotwriter' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/annotwriter' /usr/local/bin/gmake -C compart -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/compart' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/compart' /usr/local/bin/gmake -C streamtest -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/streamtest' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/streamtest' /usr/local/bin/gmake -C lds2_indexer -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/lds2_indexer' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/lds2_indexer' /usr/local/bin/gmake -C discrepancy_report -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/discrepancy_report' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/discrepancy_report' /usr/local/bin/gmake -C biosample_chk -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/biosample_chk' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/biosample_chk' /usr/local/bin/gmake -C gap_stats -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gap_stats' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gap_stats' /usr/local/bin/gmake -C table2asn -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/table2asn' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/table2asn' /usr/local/bin/gmake -C srcchk -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/srcchk' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/srcchk' /usr/local/bin/gmake -C tableval -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tableval' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tableval' /usr/local/bin/gmake -C ncbi_encrypt -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /usr/local/bin/gmake -C ssub_fork -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ssub_fork' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/ssub_fork' /usr/local/bin/gmake -C asn_cache -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cache' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/asn_cache' /usr/local/bin/gmake -C magicblast -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/magicblast' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/magicblast' /usr/local/bin/gmake -C pub_report -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/pub_report' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/pub_report' /usr/local/bin/gmake -C prot_match -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/prot_match' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/prot_match' /usr/local/bin/gmake -C gff_deconcat -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gff_deconcat' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/gff_deconcat' /usr/local/bin/gmake -C sub_fuse -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/sub_fuse' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/sub_fuse' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C split_cache -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/split_cache' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C wig2table -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/wig2table' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C netcache -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netcache' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C rmblastn -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/rmblastn' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C dblb -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dblb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C tls -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tls' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C idfetch -w all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idfetch' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app/idfetch' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/app' /usr/local/bin/gmake -C sample -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sample' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/sample' /usr/local/bin/gmake -C internal -w all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/internal' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build/internal' gmake[3]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/build' gmake[2]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> ncbi-blast+-2.7.1_1 depends on package: p5-List-MoreUtils>=0 - not found ===> Installing existing package /packages/All/p5-List-MoreUtils-0.428.txz Installing p5-List-MoreUtils-0.428... `-- Installing p5-Exporter-Tiny-1.002001... `-- Extracting p5-Exporter-Tiny-1.002001: .......... done `-- Installing p5-List-MoreUtils-XS-0.428... `-- Extracting p5-List-MoreUtils-XS-0.428: ....... done Extracting p5-List-MoreUtils-0.428: .......... done ===> ncbi-blast+-2.7.1_1 depends on package: p5-List-MoreUtils>=0 - found ===> Returning to build of ncbi-blast+-2.7.1_1 ===> ncbi-blast+-2.7.1_1 depends on file: /usr/local/bin/python2.7 - found ===> ncbi-blast+-2.7.1_1 depends on package: perl5>=5.26<5.27 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for ncbi-blast+-2.7.1_1 ===> Generating temporary packing list gmake[2]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++' if test -d /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/gbench; then \ gmake -w install-gbench; \ else \ gmake -w install-toolkit; \ fi gmake[3]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++' /bin/rm -rf /construction/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c -d /construction/biology/ncbi-blast+/stage/usr/local/bin /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++ /construction/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/bin/* /construction/biology/ncbi-blast+/stage/usr/local/bin /usr/bin/install -c -m 644 /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/*.* /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++ if test -d /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/ncbi; then \ cp -pPR /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/lib/ncbi /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++/; \ fi rm -f /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++/lib*-static.a cd /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++ && \ for x in *.a; do \ /bin/ln -s "$x" "`/usr/bin/basename \"$x\" .a`-static.a"; \ done for d in /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++/ReleaseMT/inc; do \ cd $d && find * -name .svn -prune -o -print | \ cpio -pd /construction/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ ; \ done 52138 blocks 64 blocks gmake[3]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++' gmake[2]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.7.1+-src/c++' /usr/bin/strip /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++/*.so ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for ncbi-blast+-2.7.1_1 file sizes/checksums [3991]: .......... done packing files [3991]: .......... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 9 DEC 2018 at 17:37:42 UTC Duration: 04:21:47