=> Building science/py-ruffus@py36 Started : Friday, 26 JUL 2019 at 08:30:18 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/science/py-ruffus XDG_CONFIG_HOME=/construction/science/py-ruffus HOME=/construction/science/py-ruffus TMPDIR="/tmp" PATH=/construction/science/py-ruffus/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-ruffus XDG_CONFIG_HOME=/construction/science/py-ruffus HOME=/construction/science/py-ruffus TMPDIR="/tmp" PATH=/construction/science/py-ruffus/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-ruffus/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/ruffus" EXAMPLESDIR="share/examples/ruffus" DATADIR="share/ruffus" WWWDIR="www/ruffus" ETCDIR="etc/ruffus" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ruffus DOCSDIR=/usr/local/share/doc/ruffus EXAMPLESDIR=/usr/local/share/examples/ruffus WWWDIR=/usr/local/www/ruffus ETCDIR=/usr/local/etc/ruffus -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License MIT accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-ruffus-2.8.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> py36-ruffus-2.8.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-ruffus-2.8.1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License MIT accepted by the user => ruffus-2.8.1.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/r/ruffus/ruffus-2.8.1.tar.gz ruffus-2.8.1.tar.gz 11 MB 55 MBps 01s ===> Fetching all distfiles required by py36-ruffus-2.8.1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by py36-ruffus-2.8.1 for building => SHA256 Checksum OK for ruffus-2.8.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by py36-ruffus-2.8.1 for building ===> Extracting for py36-ruffus-2.8.1 => SHA256 Checksum OK for ruffus-2.8.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-ruffus-2.8.1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-ruffus-2.8.1 depends on package: py36-sqlite3>0 - not found ===> Installing existing package /packages/All/py36-sqlite3-3.6.9_7.txz Installing py36-sqlite3-3.6.9_7... `-- Installing py36-setuptools-41.0.1... | `-- Installing python36-3.6.9... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.20.1: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libressl-2.9.2... | | `-- Extracting libressl-2.9.2: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing readline-8.0.0... | | `-- Extracting readline-8.0.0: .......... done | `-- Extracting python36-3.6.9: .......... done `-- Extracting py36-setuptools-41.0.1: .......... done `-- Installing sqlite3-3.29.0... `-- Extracting sqlite3-3.29.0: .......... done Extracting py36-sqlite3-3.6.9_7: ........ done Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== ===> py36-ruffus-2.8.1 depends on package: py36-sqlite3>0 - found ===> Returning to build of py36-ruffus-2.8.1 ===> py36-ruffus-2.8.1 depends on package: py36-setuptools>0 - found ===> py36-ruffus-2.8.1 depends on file: /usr/local/bin/python3.6 - found ===> py36-ruffus-2.8.1 depends on package: py36-setuptools>0 - found ===> py36-ruffus-2.8.1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-ruffus-2.8.1 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-ruffus-2.8.1 running build running build_py creating build creating build/lib creating build/lib/ruffus copying ruffus/ruffus_exceptions.py -> build/lib/ruffus copying ruffus/print_dependencies.py -> build/lib/ruffus copying ruffus/file_name_parameters.py -> build/lib/ruffus copying ruffus/graph.py -> build/lib/ruffus copying ruffus/combinatorics.py -> build/lib/ruffus copying ruffus/proxy_logger.py -> build/lib/ruffus copying ruffus/cmdline.py -> build/lib/ruffus copying ruffus/adjacent_pairs_iterate.py -> build/lib/ruffus copying ruffus/__init__.py -> build/lib/ruffus copying ruffus/ruffus_version.py -> build/lib/ruffus copying ruffus/parse_old_style_ruffus.py -> build/lib/ruffus copying ruffus/ruffus_utility.py -> build/lib/ruffus copying ruffus/drmaa_wrapper.py -> build/lib/ruffus copying ruffus/task.py -> build/lib/ruffus copying ruffus/dbdict.py -> build/lib/ruffus running egg_info writing ruffus.egg-info/PKG-INFO writing dependency_links to ruffus.egg-info/dependency_links.txt writing top-level names to ruffus.egg-info/top_level.txt reading manifest file 'ruffus.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'ruffus.egg-info/SOURCES.txt' creating build/lib/ruffus/test copying ruffus/test/check_subpipeline_cmdline.py -> build/lib/ruffus/test copying ruffus/test/complicated_example.py -> build/lib/ruffus/test copying ruffus/test/create_test_script_from_dependency_tree.py -> build/lib/ruffus/test copying ruffus/test/draw_specified_dependency_tree.py -> build/lib/ruffus/test copying ruffus/test/five_second.py -> build/lib/ruffus/test copying ruffus/test/manual_test_ctrl_c_exceptions.py -> build/lib/ruffus/test copying ruffus/test/manual_test_ctrl_c_exceptions_drmaa.py -> build/lib/ruffus/test copying ruffus/test/manual_test_drmaa.py -> build/lib/ruffus/test copying ruffus/test/play_with_colours.py -> build/lib/ruffus/test copying ruffus/test/qrsh_workaround.py -> build/lib/ruffus/test copying ruffus/test/run_all_unit_tests.cmd -> build/lib/ruffus/test copying ruffus/test/run_all_unit_tests3.cmd -> build/lib/ruffus/test copying ruffus/test/simpler_with_shared_logging.py -> build/lib/ruffus/test copying ruffus/test/slow_process_for_testing.py -> build/lib/ruffus/test copying ruffus/test/test_N_x_M_and_collate.py -> build/lib/ruffus/test copying ruffus/test/test_active_if.py -> build/lib/ruffus/test copying ruffus/test/test_branching_dependencies.py -> build/lib/ruffus/test copying ruffus/test/test_check_if_uptodate.py -> build/lib/ruffus/test copying ruffus/test/test_cmdline.py -> build/lib/ruffus/test copying ruffus/test/test_collate.py -> build/lib/ruffus/test copying ruffus/test/test_combinatorics.py -> build/lib/ruffus/test copying ruffus/test/test_drmaa_wrapper_run_job_locally.py -> build/lib/ruffus/test copying ruffus/test/test_empty_files_decorator.py -> build/lib/ruffus/test copying ruffus/test/test_exceptions.py -> build/lib/ruffus/test copying ruffus/test/test_file_name_parameters.py -> build/lib/ruffus/test copying ruffus/test/test_files_decorator.py -> build/lib/ruffus/test copying ruffus/test/test_filesre_combine.py -> build/lib/ruffus/test copying ruffus/test/test_filesre_split_and_combine.py -> build/lib/ruffus/test copying ruffus/test/test_follows_mkdir.py -> build/lib/ruffus/test copying ruffus/test/test_graphviz.py -> build/lib/ruffus/test copying ruffus/test/test_inputs_with_multiple_args_raising_exception.py -> build/lib/ruffus/test copying ruffus/test/test_job_completion_checksums.py -> build/lib/ruffus/test copying ruffus/test/test_job_history_with_exceptions.py -> build/lib/ruffus/test copying ruffus/test/test_mkdir.py -> build/lib/ruffus/test copying ruffus/test/test_newstyle_combinatorics.py -> build/lib/ruffus/test copying ruffus/test/test_newstyle_proxy.py -> build/lib/ruffus/test copying ruffus/test/test_newstyle_regex_error_messages.py -> build/lib/ruffus/test copying ruffus/test/test_pausing.py -> build/lib/ruffus/test copying ruffus/test/test_pipeline_printout_graph.py -> build/lib/ruffus/test copying ruffus/test/test_pool_manager.py -> build/lib/ruffus/test copying ruffus/test/test_posttask_merge.py -> build/lib/ruffus/test copying ruffus/test/test_proxy_logger.py -> build/lib/ruffus/test copying ruffus/test/test_regex_error_messages.py -> build/lib/ruffus/test copying ruffus/test/test_ruffus_utility.py -> build/lib/ruffus/test copying ruffus/test/test_ruffus_utility_parse_task_arguments.py -> build/lib/ruffus/test copying ruffus/test/test_runtime_data.py -> build/lib/ruffus/test copying ruffus/test/test_softlink_uptodate.py -> build/lib/ruffus/test copying ruffus/test/test_split_and_combine.py -> build/lib/ruffus/test copying ruffus/test/test_split_regex_and_collate.py -> build/lib/ruffus/test copying ruffus/test/test_split_subdivide_checkpointing.py -> build/lib/ruffus/test copying ruffus/test/test_subpipeline.py -> build/lib/ruffus/test copying ruffus/test/test_suffix_output_dir.py -> build/lib/ruffus/test copying ruffus/test/test_task_file_dependencies.py -> build/lib/ruffus/test copying ruffus/test/test_task_misc.py -> build/lib/ruffus/test copying ruffus/test/test_transform_add_inputs.py -> build/lib/ruffus/test copying ruffus/test/test_transform_formatter.py -> build/lib/ruffus/test copying ruffus/test/test_transform_inputs.py -> build/lib/ruffus/test copying ruffus/test/test_transform_with_no_re_matches.py -> build/lib/ruffus/test copying ruffus/test/test_tutorial7.py -> build/lib/ruffus/test copying ruffus/test/test_unicode_filenames.py -> build/lib/ruffus/test copying ruffus/test/test_verbosity.py -> build/lib/ruffus/test copying ruffus/test/test_with_logger.py -> build/lib/ruffus/test -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-ruffus-2.8.1 depends on package: py36-sqlite3>0 - found ===> py36-ruffus-2.8.1 depends on package: py36-setuptools>0 - found ===> py36-ruffus-2.8.1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-ruffus-2.8.1 ===> Generating temporary packing list running install running build running build_py running egg_info writing ruffus.egg-info/PKG-INFO writing dependency_links to ruffus.egg-info/dependency_links.txt writing top-level names to ruffus.egg-info/top_level.txt reading manifest file 'ruffus.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'ruffus.egg-info/SOURCES.txt' running install_lib creating /construction/science/py-ruffus/stage/usr/local/lib/python3.6 creating /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus creating /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_collate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_split_subdivide_checkpointing.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_transform_add_inputs.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/play_with_colours.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_split_and_combine.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_softlink_uptodate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/qrsh_workaround.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_posttask_merge.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_follows_mkdir.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_job_history_with_exceptions.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_job_completion_checksums.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/five_second.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_newstyle_combinatorics.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_pipeline_printout_graph.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_graphviz.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_ruffus_utility.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_pausing.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/manual_test_ctrl_c_exceptions.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_newstyle_regex_error_messages.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_regex_error_messages.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_proxy_logger.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_newstyle_proxy.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_ruffus_utility_parse_task_arguments.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_pool_manager.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_mkdir.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_inputs_with_multiple_args_raising_exception.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_runtime_data.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/manual_test_ctrl_c_exceptions_drmaa.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/complicated_example.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/create_test_script_from_dependency_tree.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_filesre_combine.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_combinatorics.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_drmaa_wrapper_run_job_locally.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_empty_files_decorator.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_file_name_parameters.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_tutorial7.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/simpler_with_shared_logging.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_files_decorator.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/slow_process_for_testing.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_filesre_split_and_combine.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_N_x_M_and_collate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_split_regex_and_collate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_with_logger.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/run_all_unit_tests.cmd -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_unicode_filenames.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_verbosity.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_task_misc.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_transform_inputs.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_cmdline.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_branching_dependencies.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_check_if_uptodate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_exceptions.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/run_all_unit_tests3.cmd -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/check_subpipeline_cmdline.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_transform_with_no_re_matches.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_transform_formatter.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_active_if.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_suffix_output_dir.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/manual_test_drmaa.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_task_file_dependencies.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/test_subpipeline.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/test/draw_specified_dependency_tree.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test copying build/lib/ruffus/task.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/drmaa_wrapper.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/dbdict.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/print_dependencies.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/adjacent_pairs_iterate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/__init__.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/ruffus_version.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/ruffus_exceptions.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/graph.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/cmdline.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/parse_old_style_ruffus.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/ruffus_utility.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/file_name_parameters.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/combinatorics.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus copying build/lib/ruffus/proxy_logger.py -> /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_collate.py to test_collate.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_split_subdivide_checkpointing.py to test_split_subdivide_checkpointing.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_transform_add_inputs.py to test_transform_add_inputs.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/play_with_colours.py to play_with_colours.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_split_and_combine.py to test_split_and_combine.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_softlink_uptodate.py to test_softlink_uptodate.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/qrsh_workaround.py to qrsh_workaround.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_posttask_merge.py to test_posttask_merge.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_follows_mkdir.py to test_follows_mkdir.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_job_history_with_exceptions.py to test_job_history_with_exceptions.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_job_completion_checksums.py to test_job_completion_checksums.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/five_second.py to five_second.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_newstyle_combinatorics.py to test_newstyle_combinatorics.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_pipeline_printout_graph.py to test_pipeline_printout_graph.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_graphviz.py to test_graphviz.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_ruffus_utility.py to test_ruffus_utility.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_pausing.py to test_pausing.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/manual_test_ctrl_c_exceptions.py to manual_test_ctrl_c_exceptions.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_newstyle_regex_error_messages.py to test_newstyle_regex_error_messages.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_regex_error_messages.py to test_regex_error_messages.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_proxy_logger.py to test_proxy_logger.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_newstyle_proxy.py to test_newstyle_proxy.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_ruffus_utility_parse_task_arguments.py to test_ruffus_utility_parse_task_arguments.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_pool_manager.py to test_pool_manager.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_mkdir.py to test_mkdir.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_inputs_with_multiple_args_raising_exception.py to test_inputs_with_multiple_args_raising_exception.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_runtime_data.py to test_runtime_data.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/manual_test_ctrl_c_exceptions_drmaa.py to manual_test_ctrl_c_exceptions_drmaa.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/complicated_example.py to complicated_example.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/create_test_script_from_dependency_tree.py to create_test_script_from_dependency_tree.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_filesre_combine.py to test_filesre_combine.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_combinatorics.py to test_combinatorics.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_drmaa_wrapper_run_job_locally.py to test_drmaa_wrapper_run_job_locally.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_empty_files_decorator.py to test_empty_files_decorator.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_file_name_parameters.py to test_file_name_parameters.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_tutorial7.py to test_tutorial7.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/simpler_with_shared_logging.py to simpler_with_shared_logging.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_files_decorator.py to test_files_decorator.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/slow_process_for_testing.py to slow_process_for_testing.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_filesre_split_and_combine.py to test_filesre_split_and_combine.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_N_x_M_and_collate.py to test_N_x_M_and_collate.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_split_regex_and_collate.py to test_split_regex_and_collate.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_with_logger.py to test_with_logger.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_unicode_filenames.py to test_unicode_filenames.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_verbosity.py to test_verbosity.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_task_misc.py to test_task_misc.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_transform_inputs.py to test_transform_inputs.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_cmdline.py to test_cmdline.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_branching_dependencies.py to test_branching_dependencies.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_check_if_uptodate.py to test_check_if_uptodate.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_exceptions.py to test_exceptions.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/check_subpipeline_cmdline.py to check_subpipeline_cmdline.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_transform_with_no_re_matches.py to test_transform_with_no_re_matches.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_transform_formatter.py to test_transform_formatter.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_active_if.py to test_active_if.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_suffix_output_dir.py to test_suffix_output_dir.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/manual_test_drmaa.py to manual_test_drmaa.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_task_file_dependencies.py to test_task_file_dependencies.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/test_subpipeline.py to test_subpipeline.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/test/draw_specified_dependency_tree.py to draw_specified_dependency_tree.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/task.py to task.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/drmaa_wrapper.py to drmaa_wrapper.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/dbdict.py to dbdict.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/print_dependencies.py to print_dependencies.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/adjacent_pairs_iterate.py to adjacent_pairs_iterate.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/ruffus_version.py to ruffus_version.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/ruffus_exceptions.py to ruffus_exceptions.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/graph.py to graph.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/cmdline.py to cmdline.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/parse_old_style_ruffus.py to parse_old_style_ruffus.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/ruffus_utility.py to ruffus_utility.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/file_name_parameters.py to file_name_parameters.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/combinatorics.py to combinatorics.cpython-36.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus/proxy_logger.py to proxy_logger.cpython-36.pyc writing byte-compilation script '/tmp/tmpctw8kitl.py' /usr/local/bin/python3.6 /tmp/tmpctw8kitl.py removing /tmp/tmpctw8kitl.py running install_egg_info Copying ruffus.egg-info to /construction/science/py-ruffus/stage/usr/local/lib/python3.6/site-packages/ruffus-2.8.1-py3.6.egg-info running install_scripts writing list of installed files to '/construction/science/py-ruffus/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-ruffus-2.8.1 file sizes/checksums [234]: ... done packing files [234]: ... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 26 JUL 2019 at 08:30:46 UTC Duration: 00:00:28