=> Building science/pcmsolver Started : Friday, 26 JUL 2019 at 07:45:58 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/science/pcmsolver XDG_CONFIG_HOME=/construction/science/pcmsolver HOME=/construction/science/pcmsolver TMPDIR="/tmp" PATH=/construction/science/pcmsolver/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/pcmsolver XDG_CONFIG_HOME=/construction/science/pcmsolver HOME=/construction/science/pcmsolver TMPDIR="/tmp" PATH=/construction/science/pcmsolver/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/pcmsolver/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pcmsolver" EXAMPLESDIR="share/examples/pcmsolver" DATADIR="share/pcmsolver" WWWDIR="www/pcmsolver" ETCDIR="etc/pcmsolver" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pcmsolver DOCSDIR=/usr/local/share/doc/pcmsolver EXAMPLESDIR=/usr/local/share/examples/pcmsolver WWWDIR=/usr/local/www/pcmsolver ETCDIR=/usr/local/etc/pcmsolver -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv3 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> pcmsolver-1.2.3_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> pcmsolver-1.2.3_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of pcmsolver-1.2.3_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by pcmsolver-1.2.3_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by pcmsolver-1.2.3_1 for building => SHA256 Checksum OK for PCMSolver-pcmsolver-v1.2.3_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by pcmsolver-1.2.3_1 for building ===> Extracting for pcmsolver-1.2.3_1 => SHA256 Checksum OK for PCMSolver-pcmsolver-v1.2.3_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for pcmsolver-1.2.3_1 ===> Applying ports patches for pcmsolver-1.2.3_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> pcmsolver-1.2.3_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.14.5.txz Installing cmake-3.14.5... `-- Installing curl-7.65.1_1... | `-- Installing ca_root_nss-3.45... | `-- Extracting ca_root_nss-3.45: ........ done | `-- Installing libnghttp2-1.39.1... | `-- Extracting libnghttp2-1.39.1: .......... done | `-- Installing libressl-2.9.2... | `-- Extracting libressl-2.9.2: .......... done `-- Extracting curl-7.65.1_1: .......... done `-- Installing expat-2.2.6_1... `-- Extracting expat-2.2.6_1: .......... done `-- Installing jsoncpp-1.8.1_6... `-- Extracting jsoncpp-1.8.1_6: .......... done `-- Installing libarchive-3.3.3_1,1... | `-- Installing liblz4-1.9.1,1... | `-- Extracting liblz4-1.9.1,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.3_1,1: .......... done `-- Installing libuv-1.30.1... `-- Extracting libuv-1.30.1: .......... done `-- Installing ncurses-6.1.20190525... `-- Extracting ncurses-6.1.20190525: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.14.5: .......... done Message from ca_root_nss-3.45: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> pcmsolver-1.2.3_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of pcmsolver-1.2.3_1 ===> pcmsolver-1.2.3_1 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_2.txz Installing gcc8-8.3.0_2... `-- Installing binutils-2.32_1,1... | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.20.1: .......... done `-- Extracting binutils-2.32_1,1: .......... done `-- Installing gmp-6.1.2_1... `-- Extracting gmp-6.1.2_1: .......... done `-- Installing mpc-1.1.0_2... | `-- Installing mpfr-4.0.2... | `-- Extracting mpfr-4.0.2: .......... done `-- Extracting mpc-1.1.0_2: ......... done Extracting gcc8-8.3.0_2: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> pcmsolver-1.2.3_1 depends on executable: gfortran8 - found ===> Returning to build of pcmsolver-1.2.3_1 ===> pcmsolver-1.2.3_1 depends on file: /usr/local/bin/python3.6 - not found ===> Installing existing package /packages/All/python36-3.6.9.txz Installing python36-3.6.9... `-- Installing libffi-3.2.1_3... `-- Extracting libffi-3.2.1_3: .......... done `-- Installing readline-8.0.0... `-- Extracting readline-8.0.0: .......... done Extracting python36-3.6.9: .......... done Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== ===> pcmsolver-1.2.3_1 depends on file: /usr/local/bin/python3.6 - found ===> Returning to build of pcmsolver-1.2.3_1 ===> pcmsolver-1.2.3_1 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for pcmsolver-1.2.3_1 -- The CXX compiler identification is GNU 8.3.0 -- The C compiler identification is GNU 8.3.0 -- The Fortran compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/CC -- Check for working CXX compiler: /usr/bin/CC -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- yes -- FCFLAGS is set to '-Wl,-rpath=/usr/local/lib/gcc8'. -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Verifying Fortran/CXX Compiler Compatibility -- Verifying Fortran/CXX Compiler Compatibility - Success -- Setting (unspecified) option ENABLE_CXX11_SUPPORT: ON -- Using C++11 standard -- Turning off extended diagnostic flags. -- Setting (unspecified) option ENABLE_GPERFTOOLS: OFF -- Found PythonInterp: /usr/local/bin/python3.6 (found version "3.6.9") -- Setting (unspecified) option PYMOD_INSTALL_LIBDIR: python -- Could NOT find Boost -- No libraries required, installing headers -- Eigen 3.3.2 is located here: /construction/science/pcmsolver/pcmsolver-1.2.3/external/eigen3/include/eigen3 -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done -- Generating done -- Build files have been written to: /construction/science/pcmsolver/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for pcmsolver-1.2.3_1 Scanning dependencies of target generate-config-hpp Scanning dependencies of target update_version [ 0%] Built target generate-config-hpp Scanning dependencies of target custom_boost [ 2%] Generating version info [ 4%] Unpacking Boost Blindly (no git) accepting release version: 1.2.3+zzzzzzz (recorded) 1.2.3 {} zzzzzzz 1.2.3.0 release 1.2.3 <-- 1.2.3+zzzzzzz [ 4%] Built target update_version [ 6%] Generating user-config.jam [ 8%] Installing Boost headers [ 10%] Clean-up Boost [ 10%] Built target custom_boost Scanning dependencies of target pcm-objlib [ 12%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/Element.cpp.o [ 14%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/GePolCavity.cpp.o [ 18%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/metal/metal_sphere.F90.o [ 18%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/ICavity.cpp.o [ 20%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_precision.f90.o [ 22%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/RestartCavity.cpp.o [ 24%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/AnisotropicLiquid.cpp.o [ 26%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/IonicLiquid.cpp.o [ 28%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/SphericalDiffuse.cpp.o [ 30%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/UniformDielectric.cpp.o [ 32%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/Vacuum.cpp.o [ 34%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/SphericalSharp.cpp.o [ 36%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/Input.cpp.o [ 38%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/Meddle.cpp.o In file included from /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Input.hpp:29, from /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Input.cpp:24: /construction/science/pcmsolver/.build/include/Config.hpp:29:39: warning: 'const' attribute on function returning 'void' [-Wattributes] #define attribute(x) __attribute__((x)) ^ /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Input.hpp:163:24: note: in expansion of macro 'attribute' void semanticCheck() attribute(const); ^~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/PhysicalConstants.cpp.o [ 42%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Collocation.cpp.o [ 44%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/IBoundaryIntegralOperator.cpp.o [ 46%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Numerical.cpp.o In file included from /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Meddle.hpp:31, from /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Meddle.cpp:24: /construction/science/pcmsolver/.build/include/Config.hpp:29:39: warning: 'const' attribute on function returning 'void' [-Wattributes] #define attribute(x) __attribute__((x)) ^ /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Input.hpp:163:24: note: in expansion of macro 'attribute' void semanticCheck() attribute(const); ^~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Purisima.cpp.o [ 50%] Building CXX object src/CMakeFiles/pcm-objlib.dir/solver/CPCMSolver.cpp.o [ 52%] Building CXX object src/CMakeFiles/pcm-objlib.dir/solver/IEFSolver.cpp.o [ 54%] Building CXX object src/CMakeFiles/pcm-objlib.dir/solver/SolverImpl.cpp.o [ 56%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Atom.cpp.o [ 58%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/ChargeDistribution.cpp.o [ 60%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Molecule.cpp.o [ 62%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/QuadratureRules.cpp.o [ 64%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Solvent.cpp.o [ 66%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Sphere.cpp.o [ 68%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Symmetry.cpp.o [ 70%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/cnpy.cpp.o [ 72%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/Getkw.cpp.o [ 74%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/GetkwError.cpp.o [ 76%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/Section.cpp.o [ 78%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/messages.cpp.o In file included from /construction/science/pcmsolver/pcmsolver-1.2.3/src/utils/getkw/Section.cpp:12: /construction/science/pcmsolver/pcmsolver-1.2.3/src/utils/getkw/Section.cpp: In destructor 'virtual Section::~Section()': /construction/science/pcmsolver/pcmsolver-1.2.3/src/utils/getkw/GetkwError.h:27:26: warning: throw will always call terminate() [-Wterminate] throw GetkwError(_err); \ ^ /construction/science/pcmsolver/pcmsolver-1.2.3/src/utils/getkw/Section.cpp:110:5: note: in expansion of macro 'THROW_GETKW' THROW_GETKW("Error! Unknown key type!"); ^~~~~~~~~~~ /construction/science/pcmsolver/pcmsolver-1.2.3/src/utils/getkw/GetkwError.h:27:26: note: in C++11 destructors default to noexcept throw GetkwError(_err); \ ^ /construction/science/pcmsolver/pcmsolver-1.2.3/src/utils/getkw/Section.cpp:110:5: note: in expansion of macro 'THROW_GETKW' THROW_GETKW("Error! Unknown key type!"); ^~~~~~~~~~~ [ 80%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_dblas.f90.o [ 82%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_print.f90.o [ 84%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_symmetry.f90.o [ 86%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_dlapack.f90.o [ 88%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_utils.f90.o [ 90%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_cavity.F90.o [ 92%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_cavity_interface.F90.o [ 92%] Built target pcm-objlib Scanning dependencies of target pcm-static Scanning dependencies of target pcm-shared [ 94%] Linking CXX static library ../lib/libpcm.a [ 96%] Linking CXX shared library ../lib/libpcm.so [ 96%] Built target pcm-shared Scanning dependencies of target run_pcm [ 98%] Building CXX object src/bin/CMakeFiles/run_pcm.dir/run_pcm.cpp.o [ 98%] Built target pcm-static In file included from /construction/science/pcmsolver/pcmsolver-1.2.3/src/bin/run_pcm.cpp:34: /construction/science/pcmsolver/.build/include/Config.hpp:29:39: warning: 'const' attribute on function returning 'void' [-Wattributes] #define attribute(x) __attribute__((x)) ^ /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Input.hpp:163:24: note: in expansion of macro 'attribute' void semanticCheck() attribute(const); ^~~~~~~~~ [100%] Linking CXX executable ../../bin/run_pcm [100%] Built target run_pcm -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> pcmsolver-1.2.3_1 depends on executable: gfortran8 - found ===> pcmsolver-1.2.3_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for pcmsolver-1.2.3_1 ===> Generating temporary packing list [ 2%] Generating version info Blindly (no git) accepting release version: 1.2.3+zzzzzzz (recorded) 1.2.3 {} zzzzzzz 1.2.3.0 release 1.2.3 <-- 1.2.3+zzzzzzz [ 2%] Built target update_version [ 2%] Built target generate-config-hpp [ 10%] Built target custom_boost Scanning dependencies of target pcm-objlib [ 12%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/Meddle.cpp.o In file included from /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Meddle.hpp:31, from /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Meddle.cpp:24: /construction/science/pcmsolver/.build/include/Config.hpp:29:39: warning: 'const' attribute on function returning 'void' [-Wattributes] #define attribute(x) __attribute__((x)) ^ /construction/science/pcmsolver/pcmsolver-1.2.3/src/interface/Input.hpp:163:24: note: in expansion of macro 'attribute' void semanticCheck() attribute(const); ^~~~~~~~~ [ 92%] Built target pcm-objlib [ 94%] Linking CXX shared library ../lib/libpcm.so [ 94%] Built target pcm-shared [ 96%] Linking CXX static library ../lib/libpcm.a [ 96%] Built target pcm-static [ 98%] Linking CXX executable ../../bin/run_pcm [100%] Built target run_pcm Installing the project stripped... -- Install configuration: "Release" -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/metadata.py -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/VersionInfo.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/ctaylor_math.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/taylor.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/example.cpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/taylor_math.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/micromath.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/ctaylor.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/tmath.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/polymul.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/CMakeLists.txt -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/README -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/unittest_taylor.cpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/Citation.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/Config.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/Cxx11Workarounds.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/ErrorHandling.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/LoggerInterface.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/PhysicalConstants.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/STLUtils.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/TimerInterface.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/bin/go_pcm.py -- Installing: /construction/science/pcmsolver/stage/usr/local/bin/plot_cavity.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/__init__.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/getkw.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/pcmdata.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/pcmparser.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/pyparsing.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/external/__init__.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/external/docopt.py -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/pcmsolver.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/PCMInput.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/pcmsolver.f90 -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/libpcm.so.1 -- Set runtime path of "/construction/science/pcmsolver/stage/usr/local/lib/libpcm.so.1" to "" -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/libpcm.so -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/libpcm.a -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/PCMSolverExport.h -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverConfig.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverConfigVersion.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverTargets-shared.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverTargets-shared-release.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverTargets-static.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverTargets-static-release.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/Cavity.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/CavityData.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/Element.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/GePolCavity.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/ICavity.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/RestartCavity.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/AnisotropicLiquid.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/DerivativeTypes.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/Green.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/GreenData.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/GreenUtils.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/GreensFunction.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/IGreensFunction.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/InterfacesImpl.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/IonicLiquid.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/SphericalDiffuse.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/SphericalSharp.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/UniformDielectric.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/Vacuum.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/interface/Input.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/interface/Meddle.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/BIOperatorData.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/BoundaryIntegralOperator.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/Collocation.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/IBoundaryIntegralOperator.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/Numerical.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/Purisima.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/CPCMSolver.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/IEFSolver.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/ISolver.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/Solver.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/SolverData.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/SolverImpl.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Atom.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/ChargeDistribution.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Factory.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Legendre.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Logger.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/LoggerImpl.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/MathUtils.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Molecule.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/QuadratureRules.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Solvent.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Sphere.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/SplineFunction.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Stencils.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Symmetry.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Timer.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/cnpy.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/getkw/Getkw.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/getkw/Section.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/getkw/Keyword.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/getkw/GetkwError.h -- Installing: /construction/science/pcmsolver/stage/usr/local/bin/run_pcm -- Set runtime path of "/construction/science/pcmsolver/stage/usr/local/bin/run_pcm" to "$ORIGIN/../lib" ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for pcmsolver-1.2.3_1 file sizes/checksums [100]: . done packing files [100]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 26 JUL 2019 at 07:50:43 UTC Duration: 00:04:45