=> Building science/libgridxc Started : Wednesday, 24 JUL 2019 at 11:40:08 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for libgridxc-0.8.5_1: LIBXC=on: Use libxc for exchange-correlation functionals for DFT MPI=off: MPI (Message Passing Interface) support ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/construction/science/libgridxc XDG_CONFIG_HOME=/construction/science/libgridxc HOME=/construction/science/libgridxc TMPDIR="/tmp" PATH=/construction/science/libgridxc/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- INSTALL_DIR=/construction/science/libgridxc/tmp_stage/usr/local FREEBSD_LOCALBASE=/usr/local LIBXC_ROOT=/usr/local WITH_LIBXC=1 F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/libgridxc XDG_CONFIG_HOME=/construction/science/libgridxc HOME=/construction/science/libgridxc TMPDIR="/tmp" PATH=/construction/science/libgridxc/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/libgridxc/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libgridxc" EXAMPLESDIR="share/examples/libgridxc" DATADIR="share/libgridxc" WWWDIR="www/libgridxc" ETCDIR="etc/libgridxc" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libgridxc DOCSDIR=/usr/local/share/doc/libgridxc EXAMPLESDIR=/usr/local/share/examples/libgridxc WWWDIR=/usr/local/www/libgridxc ETCDIR=/usr/local/etc/libgridxc -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> libgridxc-0.8.5_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> libgridxc-0.8.5_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libgridxc-0.8.5_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by libgridxc-0.8.5_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by libgridxc-0.8.5_1 for building => SHA256 Checksum OK for libgridxc-0.8.5.tgz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by libgridxc-0.8.5_1 for building ===> Extracting for libgridxc-0.8.5_1 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by libgridxc-0.8.5_1 for building => SHA256 Checksum OK for libgridxc-0.8.5.tgz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for libgridxc-0.8.5_1 ===> Applying ports patches for libgridxc-0.8.5_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> libgridxc-0.8.5_1 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_2.txz Installing gcc8-8.3.0_2... `-- Installing binutils-2.32_1,1... | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.20.1: .......... done `-- Extracting binutils-2.32_1,1: .......... done `-- Installing gmp-6.1.2_1... `-- Extracting gmp-6.1.2_1: .......... done `-- Installing mpc-1.1.0_2... | `-- Installing mpfr-4.0.2... | `-- Extracting mpfr-4.0.2: .......... done `-- Extracting mpc-1.1.0_2: ......... done Extracting gcc8-8.3.0_2: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> libgridxc-0.8.5_1 depends on executable: gfortran8 - found ===> Returning to build of libgridxc-0.8.5_1 ===> libgridxc-0.8.5_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... Extracting gmake-4.2.1_3: .......... done ===> libgridxc-0.8.5_1 depends on executable: gmake - found ===> Returning to build of libgridxc-0.8.5_1 ===> libgridxc-0.8.5_1 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> libgridxc-0.8.5_1 depends on shared library: libxc.so - not found ===> Installing existing package /packages/All/libxc-4.2.3_2.txz Installing libxc-4.2.3_2... `-- Installing perl5-5.28.2... `-- Extracting perl5-5.28.2: .......... done Extracting libxc-4.2.3_2: .......... done Message from perl5-5.28.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> libgridxc-0.8.5_1 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so) ===> Returning to build of libgridxc-0.8.5_1 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for libgridxc-0.8.5_1 *** Compilation setup done. -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for libgridxc-0.8.5_1 ==> make WITH_LIBXC=1 WITH_MPI= PREFIX=/construction/science/libgridxc/tmp_stage/usr/local/serial make[2]: Entering directory '/construction/science/libgridxc/libgridxc-0.8.5/build' rm -f *.o *.*d *.a gridxc.mk rm -rf lib include (cd MPI_instr ; make \ "VPATH=/construction/science/libgridxc/libgridxc-0.8.5/src/MPI_instr" clean) make[3]: Entering directory '/construction/science/libgridxc/libgridxc-0.8.5/build/MPI_instr' make[3]: Leaving directory '/construction/science/libgridxc/libgridxc-0.8.5/build/MPI_instr' make[2]: Leaving directory '/construction/science/libgridxc/libgridxc-0.8.5/build' make[2]: Entering directory '/construction/science/libgridxc/libgridxc-0.8.5/build' rm -f *.o *.*d *.a gridxc.mk rm -rf lib include (cd MPI_instr ; make \ "VPATH=/construction/science/libgridxc/libgridxc-0.8.5/src/MPI_instr" clean) make[3]: Entering directory '/construction/science/libgridxc/libgridxc-0.8.5/build/MPI_instr' make[3]: Leaving directory '/construction/science/libgridxc/libgridxc-0.8.5/build/MPI_instr' sed 's/GRIDXC_USES_LIBXC=0/GRIDXC_USES_LIBXC=1/g' gridxc.mk.in > gridxc.mk gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/alloc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/precision.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/sys.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/bessph.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/cellsubs.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/sorting.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/minvec.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/chkgmx.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include /construction/science/libgridxc/libgridxc-0.8.5/src/interpolation.f90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/m_io.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/array.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/gridxc_config.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/moreParallelSubs.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/m_fft_gpfa.F gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include /construction/science/libgridxc/libgridxc-0.8.5/src/m_walltime.f90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/radfft.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/debugxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/am05.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/ldaxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/ggaxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include /construction/science/libgridxc/libgridxc-0.8.5/src/mesh1d.f90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/vv_vdwxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/vdwxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/xcmod.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/atomxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/mesh3d.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/fft3d.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/fftr.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/cellxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/gridxc.F90 Prefix: /construction/science/libgridxc/tmp_stage/usr/local/serial mkdir -p lib mkdir -p include cp -p gridxc.mod gridxc_config.mod m_atomxc.mod m_cellxc.mod xcmod.mod m_ldaxc.mod m_ggaxc.mod m_fft_gpfa.mod debugxc.mod mesh3d.mod include/ cp -p libGridXC.so lib/ mkdir -p /construction/science/libgridxc/tmp_stage/usr/local/lib mkdir -p /construction/science/libgridxc/tmp_stage/usr/local/include cp -p gridxc.mod gridxc_config.mod m_atomxc.mod m_cellxc.mod xcmod.mod m_ldaxc.mod m_ggaxc.mod m_fft_gpfa.mod debugxc.mod mesh3d.mod /construction/science/libgridxc/tmp_stage/usr/local/include/ cp -p libGridXC.so /construction/science/libgridxc/tmp_stage/usr/local/lib cp -p gridxc.mk libxc.mk /construction/science/libgridxc/tmp_stage/usr/local make[2]: Leaving directory '/construction/science/libgridxc/libgridxc-0.8.5/build' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> libgridxc-0.8.5_1 depends on executable: gfortran8 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for libgridxc-0.8.5_1 ===> Generating temporary packing list cd /construction/science/libgridxc/tmp_stage && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/science/libgridxc/stage /bin/mkdir -p /construction/science/libgridxc/stage/usr/local/share/mk && /bin/mv /construction/science/libgridxc/stage/usr/local/*.mk /construction/science/libgridxc/stage/usr/local/share/mk ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for libgridxc-0.8.5_1 file sizes/checksums [16]: . done packing files [16]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 24 JUL 2019 at 11:40:57 UTC Duration: 00:00:48