=> Building math/libnormaliz Started : Thursday, 25 JUL 2019 at 00:07:38 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for libnormaliz-3.7.3: COCOA=off: Link with libcocoa.a (might cause circular dependency) DOCS=on: Build and/or install documentation FLINT=off: Link with libflint.so OPENMP=off: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/math/libnormaliz XDG_CONFIG_HOME=/construction/math/libnormaliz HOME=/construction/math/libnormaliz TMPDIR="/tmp" PATH=/construction/math/libnormaliz/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- --disable-nmzintegrate --disable-flint --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/math/libnormaliz XDG_CONFIG_HOME=/construction/math/libnormaliz HOME=/construction/math/libnormaliz TMPDIR="/tmp" PATH=/construction/math/libnormaliz/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing -I /usr/local/include -I /construction/math/libnormaliz/Normaliz-3.7.3/source " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/libnormaliz/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libnormaliz" EXAMPLESDIR="share/examples/libnormaliz" DATADIR="share/libnormaliz" WWWDIR="www/libnormaliz" ETCDIR="etc/libnormaliz" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libnormaliz DOCSDIR=/usr/local/share/doc/libnormaliz EXAMPLESDIR=/usr/local/share/examples/libnormaliz WWWDIR=/usr/local/www/libnormaliz ETCDIR=/usr/local/etc/libnormaliz -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv3+ accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> libnormaliz-3.7.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> libnormaliz-3.7.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libnormaliz-3.7.3 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by libnormaliz-3.7.3 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by libnormaliz-3.7.3 for building => SHA256 Checksum OK for Normaliz-Normaliz-v3.7.3_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by libnormaliz-3.7.3 for building ===> Extracting for libnormaliz-3.7.3 => SHA256 Checksum OK for Normaliz-Normaliz-v3.7.3_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for libnormaliz-3.7.3 ===> Applying ports patches for libnormaliz-3.7.3 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> libnormaliz-3.7.3 depends on file: /usr/local/include/boost/dynamic_bitset.hpp - not found ===> Installing existing package /packages/All/boost-libs-1.70.0_2.txz Installing boost-libs-1.70.0_2... `-- Installing icu-64.2,1... `-- Extracting icu-64.2,1: .......... done Extracting boost-libs-1.70.0_2: .......... done Message from boost-libs-1.70.0_2: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> libnormaliz-3.7.3 depends on file: /usr/local/include/boost/dynamic_bitset.hpp - found ===> Returning to build of libnormaliz-3.7.3 ===> libnormaliz-3.7.3 depends on file: /usr/local/include/gmpxx.h - not found ===> Installing existing package /packages/All/gmp-6.1.2_1.txz Installing gmp-6.1.2_1... `-- Installing indexinfo-0.3.1... `-- Extracting indexinfo-0.3.1: .... done Extracting gmp-6.1.2_1: .......... done ===> libnormaliz-3.7.3 depends on file: /usr/local/include/gmpxx.h - found ===> Returning to build of libnormaliz-3.7.3 ===> libnormaliz-3.7.3 depends on package: autoconf>=2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_2.txz Installing autoconf-2.69_2... `-- Installing autoconf-wrapper-20131203... `-- Extracting autoconf-wrapper-20131203: .......... done `-- Installing m4-1.4.18_1,1... `-- Extracting m4-1.4.18_1,1: .......... done `-- Installing perl5-5.28.2... `-- Extracting perl5-5.28.2: .......... done Extracting autoconf-2.69_2: .......... done Message from perl5-5.28.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> libnormaliz-3.7.3 depends on package: autoconf>=2.69 - found ===> Returning to build of libnormaliz-3.7.3 ===> libnormaliz-3.7.3 depends on package: automake>=1.16.1 - not found ===> Installing existing package /packages/All/automake-1.16.1_1.txz Installing automake-1.16.1_1... Extracting automake-1.16.1_1: .......... done ===> libnormaliz-3.7.3 depends on package: automake>=1.16.1 - found ===> Returning to build of libnormaliz-3.7.3 ===> libnormaliz-3.7.3 depends on executable: libtoolize - not found ===> Installing existing package /packages/All/libtool-2.4.6_1.txz Installing libtool-2.4.6_1... Extracting libtool-2.4.6_1: .......... done ===> libnormaliz-3.7.3 depends on executable: libtoolize - found ===> Returning to build of libnormaliz-3.7.3 ===> libnormaliz-3.7.3 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... `-- Installing gettext-runtime-0.20.1... `-- Extracting gettext-runtime-0.20.1: .......... done Extracting gmake-4.2.1_3: .......... done ===> libnormaliz-3.7.3 depends on executable: gmake - found ===> Returning to build of libnormaliz-3.7.3 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for libnormaliz-3.7.3 libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:23: installing './compile' configure.ac:23: installing './config.guess' configure.ac:23: installing './config.sub' configure.ac:10: installing './install-sh' configure.ac:10: installing './missing' source/Makefile.am:65: warning: noinst_PROGRAMS multiply defined in condition TRUE ... source/Makefile.am:60: ... 'noinst_PROGRAMS' previously defined here source/Makefile.am: installing './depcomp' source/Makefile.am:61: warning: variable 'maxsimplex_maxsimplex_SOURCES' is defined but no program or source/Makefile.am:61: library has 'maxsimplex_maxsimplex' as canonical name (possible typo) source/Makefile.am:62: warning: variable 'maxsimplex_maxsimplex_LDADD' is defined but no program or source/Makefile.am:62: library has 'maxsimplex_maxsimplex' as canonical name (possible typo) configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking whether gmake supports the include directive... yes (GNU style) checking dependency style of c++... gcc3 checking whether c++ supports C++14 features by default... yes checking build system type... x86_64-portbld-dragonfly5.6 checking host system type... x86_64-portbld-dragonfly5.6 checking how to print strings... printf checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert x86_64-portbld-dragonfly5.6 file names to x86_64-portbld-dragonfly5.6 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly5.6 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly5.6 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly5.6 ld.so checking how to hardcode library paths into programs... immediate checking whether GMP C++ library is available... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether SCIP headers and library are available... no configure: Cone decomposition with SCIP integer programming solver will not be available because the SCIP library was not found checking whether nauty headers and library are available... checking for densenauty in -lnauty... no no checking whether e-antic headers and library are available... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating source/Makefile config.status: creating source/libnormaliz/version.h config.status: creating example/Makefile config.status: creating test/Makefile config.status: creating source/libnormaliz/nmz_config.h config.status: executing depfiles commands config.status: executing libtool commands -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for libnormaliz-3.7.3 gmake[1]: Entering directory '/construction/math/libnormaliz/Normaliz-3.7.3/source/libnormaliz' c++ -pipe -O2 -fno-strict-aliasing -I /usr/local/include -I /construction/math/libnormaliz/Normaliz-3.7.3/source -c enumeration.cpp -o enumeration.o c++ -pipe -O2 -fno-strict-aliasing -I /usr/local/include -I /construction/math/libnormaliz/Normaliz-3.7.3/source -c offload_handler.cpp -o offload_handler.o c++ -pipe -O2 -fno-strict-aliasing -I /usr/local/include -I /construction/math/libnormaliz/Normaliz-3.7.3/source -c other_algorithms.cpp -o other_algorithms.o c++ -pipe -O2 -fno-strict-aliasing -I /usr/local/include -I /construction/math/libnormaliz/Normaliz-3.7.3/source -c linear_algebra.cpp -o linear_algebra.o c++ -pipe -O2 -fno-strict-aliasing -I /usr/local/include -I /construction/math/libnormaliz/Normaliz-3.7.3/source -c primal.cpp -o primal.o c++ -pipe -O2 -fno-strict-aliasing -I /usr/local/include -I /construction/math/libnormaliz/Normaliz-3.7.3/source -c cone_and_control.cpp -o cone_and_control.o In file included from linear_algebra.cpp:30: /construction/math/libnormaliz/Normaliz-3.7.3/source/libnormaliz/matrix.cpp: In member function 'std::vector libnormaliz::Matrix::VxM(const std::vector&) const [with Integer = __gmp_expr<__mpq_struct [1], __mpq_struct [1]>]': /construction/math/libnormaliz/Normaliz-3.7.3/source/libnormaliz/matrix.cpp:1303:29: warning: control reaches end of non-void function [-Wreturn-type] vector w(nc,0); ^ c++ -pipe -O2 -fno-strict-aliasing -I /usr/local/include -I /construction/math/libnormaliz/Normaliz-3.7.3/source -c output.cpp -o output.o In file included from cone_and_control.cpp:29: /construction/math/libnormaliz/Normaliz-3.7.3/source/libnormaliz/input_type.cpp: In function 'std::__cxx11::string libnormaliz::numpar_to_string(const libnormaliz::NumParam::Param&)': /construction/math/libnormaliz/Normaliz-3.7.3/source/libnormaliz/input_type.cpp:213:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ c++ -pipe -O2 -fno-strict-aliasing -I /usr/local/include -I /construction/math/libnormaliz/Normaliz-3.7.3/source -c nmz_nauty.cpp -o nmz_nauty.o ar -cr libnormaliz.a enumeration.o offload_handler.o other_algorithms.o linear_algebra.o primal.o cone_and_control.o output.o nmz_nauty.o gmake[1]: Leaving directory '/construction/math/libnormaliz/Normaliz-3.7.3/source/libnormaliz' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for libnormaliz-3.7.3 ===> Generating temporary packing list /bin/mkdir -p /construction/math/libnormaliz/stage/usr/local/include/libnormaliz install -m 0644 /construction/math/libnormaliz/Normaliz-3.7.3/source/libnormaliz/libnormaliz.a /construction/math/libnormaliz/stage/usr/local/lib cd /construction/math/libnormaliz/Normaliz-3.7.3/source/libnormaliz && install -m 0644 cone.h cone_property.h convert.h general.h HilbertSeries.h integer.h libnormaliz.h map_operations.h matrix.h my_omp.h normaliz_exception.h sublattice_representation.h vector_operations.h version.h nmz_integrate.h /construction/math/libnormaliz/stage/usr/local/include/libnormaliz /bin/mkdir -p /construction/math/libnormaliz/stage/usr/local/share/doc/libnormaliz install -m 444 /construction/math/libnormaliz/Normaliz-3.7.3/doc/Normaliz.pdf /construction/math/libnormaliz/stage/usr/local/share/doc/libnormaliz ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for libnormaliz-3.7.3 file sizes/checksums [20]: . done packing files [20]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 25 JUL 2019 at 00:10:47 UTC Duration: 00:03:08