=> Building databases/py-tiledb@py36 Started : Wednesday, 24 JUL 2019 at 23:19:59 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/databases/py-tiledb XDG_CONFIG_HOME=/construction/databases/py-tiledb HOME=/construction/databases/py-tiledb TMPDIR="/tmp" PATH=/construction/databases/py-tiledb/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/databases/py-tiledb XDG_CONFIG_HOME=/construction/databases/py-tiledb HOME=/construction/databases/py-tiledb TMPDIR="/tmp" PATH=/construction/databases/py-tiledb/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/databases/py-tiledb/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py36-tiledb" EXAMPLESDIR="share/examples/py36-tiledb" DATADIR="share/py36-tiledb" WWWDIR="www/py36-tiledb" ETCDIR="etc/py36-tiledb" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py36-tiledb DOCSDIR=/usr/local/share/doc/py36-tiledb EXAMPLESDIR=/usr/local/share/examples/py36-tiledb WWWDIR=/usr/local/www/py36-tiledb ETCDIR=/usr/local/etc/py36-tiledb -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License MIT accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-tiledb-0.4.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> py36-tiledb-0.4.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-tiledb-0.4.2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by py36-tiledb-0.4.2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by py36-tiledb-0.4.2 for building => SHA256 Checksum OK for tiledb-0.4.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by py36-tiledb-0.4.2 for building ===> Extracting for py36-tiledb-0.4.2 => SHA256 Checksum OK for tiledb-0.4.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-tiledb-0.4.2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-tiledb-0.4.2 depends on package: py36-setuptools_scm>=1.5.4 - not found ===> Installing existing package /packages/All/py36-setuptools_scm-3.3.3.txz Installing py36-setuptools_scm-3.3.3... `-- Installing py36-setuptools-41.0.1... | `-- Installing python36-3.6.9... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.20.1: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libressl-2.9.2... | | `-- Extracting libressl-2.9.2: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing readline-8.0.0... | | `-- Extracting readline-8.0.0: .......... done | `-- Extracting python36-3.6.9: .......... done `-- Extracting py36-setuptools-41.0.1: .......... done Extracting py36-setuptools_scm-3.3.3: .......... done Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== ===> py36-tiledb-0.4.2 depends on package: py36-setuptools_scm>=1.5.4 - found ===> Returning to build of py36-tiledb-0.4.2 ===> py36-tiledb-0.4.2 depends on package: py36-wheel>=0.30 - not found ===> Installing existing package /packages/All/py36-wheel-0.30.0.txz Installing py36-wheel-0.30.0... Extracting py36-wheel-0.30.0: .......... done ===> py36-tiledb-0.4.2 depends on package: py36-wheel>=0.30 - found ===> Returning to build of py36-tiledb-0.4.2 ===> py36-tiledb-0.4.2 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.4,1.txz Installing py36-numpy-1.16.4,1... `-- Installing gcc8-8.3.0_2... | `-- Installing binutils-2.32_1,1... | `-- Extracting binutils-2.32_1,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ......... done `-- Extracting gcc8-8.3.0_2: .......... done `-- Installing openblas-0.2.20_8,1... `-- Extracting openblas-0.2.20_8,1: ......... done `-- Installing suitesparse-5.2.0_3... | `-- Installing lapack-3.5.0_7... | | `-- Installing blas-3.5.0_5... | | `-- Extracting blas-3.5.0_5: ....... done | `-- Extracting lapack-3.5.0_7: .......... done | `-- Installing metis-5.1.0_7... | `-- Extracting metis-5.1.0_7: .......... done `-- Extracting suitesparse-5.2.0_3: .......... done Extracting py36-numpy-1.16.4,1: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-tiledb-0.4.2 depends on package: py36-numpy>0 - found ===> Returning to build of py36-tiledb-0.4.2 ===> py36-tiledb-0.4.2 depends on package: py36-setuptools>0 - found ===> py36-tiledb-0.4.2 depends on file: /usr/local/bin/python3.6 - found ===> py36-tiledb-0.4.2 depends on executable: cython-3.6 - not found ===> Installing existing package /packages/All/py36-cython-0.29_1.txz Installing py36-cython-0.29_1... Extracting py36-cython-0.29_1: .......... done ===> py36-tiledb-0.4.2 depends on executable: cython-3.6 - found ===> Returning to build of py36-tiledb-0.4.2 ===> py36-tiledb-0.4.2 depends on package: py36-setuptools>0 - found ===> py36-tiledb-0.4.2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py36-tiledb-0.4.2 depends on shared library: libtiledb.so - not found ===> Installing existing package /packages/All/tiledb-1.5.1.txz Installing tiledb-1.5.1... `-- Installing catch-2.9.1... `-- Extracting catch-2.9.1: .......... done `-- Installing clipp-1.2.3... `-- Extracting clipp-1.2.3: .... done `-- Installing liblz4-1.9.1,1... `-- Extracting liblz4-1.9.1,1: .......... done `-- Installing spdlog-1.3.1... `-- Extracting spdlog-1.3.1: .......... done `-- Installing tbb-2019.5... `-- Extracting tbb-2019.5: .......... done `-- Installing zstd-1.4.0... `-- Extracting zstd-1.4.0: .......... done Extracting tiledb-1.5.1: .......... done ===> py36-tiledb-0.4.2 depends on shared library: libtiledb.so - found (/usr/local/lib/libtiledb.so) ===> Returning to build of py36-tiledb-0.4.2 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-tiledb-0.4.2 libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'libtiledb.so' running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-tiledb-0.4.2 libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'libtiledb.so' running build running build_py creating build creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6 creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb copying tiledb/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb copying tiledb/highlevel.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb copying tiledb/version.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests copying tiledb/tests/all.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests copying tiledb/tests/common.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests copying tiledb/tests/test_dask.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests copying tiledb/tests/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests copying tiledb/tests/test_util.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests copying tiledb/tests/test_libtiledb.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests running build_ext libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'libtiledb.so' cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp building 'tiledb.libtiledb' extension creating build/temp.dragonfly-5.6-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c tiledb/libtiledb.cpp -o build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/libtiledb.o -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tiledb/libtiledb.cpp:633: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ c++ -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/libtiledb.o -L/usr/local/lib -ltiledb -lpython3.6m -o build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/libtiledb.so /usr/local/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/databases/py-tiledb/tiledb-0.4.2/tiledb/libtiledb.pxd tree = Parsing.p_module(s, pxd, full_module_name) -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-tiledb-0.4.2 depends on package: py36-numpy>0 - found ===> py36-tiledb-0.4.2 depends on package: py36-setuptools>0 - found ===> py36-tiledb-0.4.2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-tiledb-0.4.2 ===> Generating temporary packing list libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'libtiledb.so' running install running build running build_py copying tiledb/version.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb running build_ext libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'libtiledb.so' skipping 'tiledb/libtiledb.cpp' Cython extension (up-to-date) running install_lib creating /construction/databases/py-tiledb/stage/usr/local/lib/python3.6 creating /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages creating /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb creating /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests/test_libtiledb.py -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests/test_util.py -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests/all.py -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests/common.py -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests/__init__.py -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/tests/test_dask.py -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/highlevel.py -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/__init__.py -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/version.py -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tiledb/libtiledb.so -> /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb byte-compiling /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests/test_libtiledb.py to test_libtiledb.cpython-36.pyc byte-compiling /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests/test_util.py to test_util.cpython-36.pyc byte-compiling /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests/all.py to all.cpython-36.pyc byte-compiling /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests/common.py to common.cpython-36.pyc byte-compiling /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/tests/test_dask.py to test_dask.cpython-36.pyc byte-compiling /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/highlevel.py to highlevel.cpython-36.pyc byte-compiling /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb/version.py to version.cpython-36.pyc writing byte-compilation script '/tmp/tmp61e02403.py' /usr/local/bin/python3.6 /tmp/tmp61e02403.py removing /tmp/tmp61e02403.py running install_egg_info running egg_info writing tiledb.egg-info/PKG-INFO writing dependency_links to tiledb.egg-info/dependency_links.txt writing requirements to tiledb.egg-info/requires.txt writing top-level names to tiledb.egg-info/top_level.txt reading manifest file 'tiledb.egg-info/SOURCES.txt' writing manifest file 'tiledb.egg-info/SOURCES.txt' Copying tiledb.egg-info to /construction/databases/py-tiledb/stage/usr/local/lib/python3.6/site-packages/tiledb-0.4.2-py3.6.egg-info running install_scripts writing list of installed files to '/construction/databases/py-tiledb/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-tiledb-0.4.2 file sizes/checksums [36]: . done packing files [36]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 24 JUL 2019 at 23:21:42 UTC Duration: 00:01:43