=> Building biology/seaview Started : Wednesday, 24 JUL 2019 at 17:33:40 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/biology/seaview XDG_CONFIG_HOME=/construction/biology/seaview HOME=/construction/biology/seaview TMPDIR="/tmp" PATH=/construction/biology/seaview/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- HELPFILE='-DDEFAULT_HELPFILE="/usr/local/share/seaview/seaview.html"' PHYMLNAME='-DPHYMLNAME="phyml"' IFLTK='-I/usr/local/include' LFLTK='-L/usr/local/lib' USE_XFT='-DUSE_XFT' OPT="-pipe -O2 -fno-strict-aliasing " XDG_DATA_HOME=/construction/biology/seaview XDG_CONFIG_HOME=/construction/biology/seaview HOME=/construction/biology/seaview TMPDIR="/tmp" PATH=/construction/biology/seaview/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/seaview/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/seaview" EXAMPLESDIR="share/examples/seaview" DATADIR="share/seaview" WWWDIR="www/seaview" ETCDIR="etc/seaview" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seaview DOCSDIR=/usr/local/share/doc/seaview EXAMPLESDIR=/usr/local/share/examples/seaview WWWDIR=/usr/local/www/seaview ETCDIR=/usr/local/etc/seaview -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv3 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> seaview-4.7,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> seaview-4.7,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seaview-4.7,1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seaview-4.7,1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seaview-4.7,1 for building => SHA256 Checksum OK for seaview_4.7.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seaview-4.7,1 for building ===> Extracting for seaview-4.7,1 => SHA256 Checksum OK for seaview_4.7.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for seaview-4.7,1 ===> Applying ports patches for seaview-4.7,1 /usr/bin/sed -i.bak -e 's|^\(CC\) |#\1 | ; s|-ldl || ; s|^\(CXX\) |#\1 |' /construction/biology/seaview/seaview/Makefile -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> seaview-4.7,1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... `-- Installing gettext-runtime-0.20.1... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gettext-runtime-0.20.1: .......... done Extracting gmake-4.2.1_3: .......... done ===> seaview-4.7,1 depends on executable: gmake - found ===> Returning to build of seaview-4.7,1 ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Installing existing package /packages/All/libX11-1.6.8,1.txz Installing libX11-1.6.8,1... `-- Installing libXau-1.0.9... `-- Extracting libXau-1.0.9: .......... done `-- Installing libXdmcp-1.1.3... | `-- Installing xorgproto-2019.1... | `-- Extracting xorgproto-2019.1: .......... done `-- Extracting libXdmcp-1.1.3: ......... done `-- Installing libxcb-1.13.1... | `-- Installing libpthread-stubs-0.4... | `-- Extracting libpthread-stubs-0.4: .... done | `-- Installing libxml2-2.9.9... | `-- Extracting libxml2-2.9.9: .......... done `-- Extracting libxcb-1.13.1: .......... done Extracting libX11-1.6.8,1: .......... done ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> Returning to build of seaview-4.7,1 ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - not found ===> Installing existing package /packages/All/libXcursor-1.2.0.txz Installing libXcursor-1.2.0... `-- Installing libXfixes-5.0.3_2... `-- Extracting libXfixes-5.0.3_2: .......... done `-- Installing libXrender-0.9.10_2... `-- Extracting libXrender-0.9.10_2: .......... done Extracting libXcursor-1.2.0: .......... done ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - found ===> Returning to build of seaview-4.7,1 ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found ===> Installing existing package /packages/All/libXext-1.3.4,1.txz Installing libXext-1.3.4,1... Extracting libXext-1.3.4,1: .......... done ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> Returning to build of seaview-4.7,1 ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xfixes.pc - found ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - not found ===> Installing existing package /packages/All/libXft-2.3.2_3.txz Installing libXft-2.3.2_3... `-- Installing fontconfig-2.12.6,1... | `-- Installing expat-2.2.6_1... | `-- Extracting expat-2.2.6_1: .......... done | `-- Installing freetype2-2.10.0... | `-- Extracting freetype2-2.10.0: .......... done `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Extracting libXft-2.3.2_3: .......... done Message from freetype2-2.10.0: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - found ===> Returning to build of seaview-4.7,1 ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - not found ===> Installing existing package /packages/All/libXinerama-1.1.4_2,1.txz Installing libXinerama-1.1.4_2,1... Extracting libXinerama-1.1.4_2,1: .......... done ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - found ===> Returning to build of seaview-4.7,1 ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> seaview-4.7,1 depends on shared library: libfltk.so - not found ===> Installing existing package /packages/All/fltk-1.3.5.txz Installing fltk-1.3.5... `-- Installing jpeg-turbo-2.0.2... `-- Extracting jpeg-turbo-2.0.2: .......... done `-- Installing libGLU-9.0.0_3... | `-- Installing mesa-libs-18.3.2_1... | | `-- Installing libXdamage-1.1.5... | | `-- Extracting libXdamage-1.1.5: ......... done | | `-- Installing libXrandr-1.5.2... | | `-- Extracting libXrandr-1.5.2: .......... done | | `-- Installing libXxf86vm-1.1.4_3... | | `-- Extracting libXxf86vm-1.1.4_3: .......... done | | `-- Installing libdrm-2.4.99... | | `-- Installing libpciaccess-0.14... | | | `-- Installing pciids-20190620... | | | `-- Extracting pciids-20190620: ..... done | | `-- Extracting libpciaccess-0.14: ......... done | | `-- Extracting libdrm-2.4.99: .......... done | | `-- Installing libelf-0.8.13_3... | | `-- Extracting libelf-0.8.13_3: .......... done | | `-- Installing libxshmfence-1.3... | | `-- Extracting libxshmfence-1.3: ......... done | | `-- Installing wayland-1.16.0... | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Extracting wayland-1.16.0: .......... done | `-- Extracting mesa-libs-18.3.2_1: .......... done `-- Extracting libGLU-9.0.0_3: ...... done `-- Installing png-1.6.37... `-- Extracting png-1.6.37: .......... done Extracting fltk-1.3.5: .......... done ===> seaview-4.7,1 depends on shared library: libfltk.so - found (/usr/local/lib/libfltk.so) ===> Returning to build of seaview-4.7,1 ===> seaview-4.7,1 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> seaview-4.7,1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> seaview-4.7,1 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for seaview-4.7,1 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for seaview-4.7,1 gmake[1]: Entering directory '/construction/biology/seaview/seaview' c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx seaview.cxx: In function 'void goto_callback(Fl_Widget*, void*)': seaview.cxx:2738:9: warning: 'char* strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(target, p, l); target[l] = 0; majuscules(target); ~~~~~~~^~~~~~~~~~~~~~ seaview.cxx:2736:12: note: length computed here l = strlen(p); ~~~~~~^~~ c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx c++ -c -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx c++ -c -I. -pipe -O2 -fno-strict-aliasing -Dunix -pipe -O2 -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_Native_File_Chooser_FLTK.cxx cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/raa_acnuc.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/parser.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/md5.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/zsockr.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/misc_acnuc.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/dnapars.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/protpars.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/seq.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/phylip.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/lwl.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/bionj.c cc -c -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -Dunix -Icsrc csrc/phyml_util.c c++ -o seaview seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -lpthread -lz gmake[1]: Leaving directory '/construction/biology/seaview/seaview' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - found ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xfixes.pc - found ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - found ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - found ===> seaview-4.7,1 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for seaview-4.7,1 ===> Generating temporary packing list (cd /construction/biology/seaview/seaview && install -s -m 555 seaview /construction/biology/seaview/stage/usr/local/bin) (cd /construction/biology/seaview/seaview && install -m 444 seaview.1 /construction/biology/seaview/stage/usr/local/man/man1) /bin/mkdir -p /construction/biology/seaview/stage/usr/local/share/seaview (cd /construction/biology/seaview/seaview && install -m 0644 seaview.html /construction/biology/seaview/stage/usr/local/share/seaview) (cd /construction/biology/seaview/seaview && install -m 0644 seaview.xpm /construction/biology/seaview/stage/usr/local/share/pixmaps) ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for seaview-4.7,1 file sizes/checksums [8]: . done packing files [8]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 24 JUL 2019 at 17:34:05 UTC Duration: 00:00:24