=> Building biology/py-macs2@py27 Started : Wednesday, 24 JUL 2019 at 17:29:23 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/biology/py-macs2 XDG_CONFIG_HOME=/construction/biology/py-macs2 HOME=/construction/biology/py-macs2 TMPDIR="/tmp" PATH=/construction/biology/py-macs2/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-macs2 XDG_CONFIG_HOME=/construction/biology/py-macs2 HOME=/construction/biology/py-macs2 TMPDIR="/tmp" PATH=/construction/biology/py-macs2/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/py-macs2/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py27-macs2" EXAMPLESDIR="share/examples/py27-macs2" DATADIR="share/py27-macs2" WWWDIR="www/py27-macs2" ETCDIR="etc/py27-macs2" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py27-macs2 DOCSDIR=/usr/local/share/doc/py27-macs2 EXAMPLESDIR=/usr/local/share/examples/py27-macs2 WWWDIR=/usr/local/www/py27-macs2 ETCDIR=/usr/local/etc/py27-macs2 -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-macs2-2.1.0.p20170505_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> py27-macs2-2.1.0.p20170505_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-macs2-2.1.0.p20170505_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-macs2-2.1.0.p20170505_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-macs2-2.1.0.p20170505_2 for building => SHA256 Checksum OK for taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-macs2-2.1.0.p20170505_2 for building ===> Extracting for py27-macs2-2.1.0.p20170505_2 => SHA256 Checksum OK for taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-macs2-2.1.0.p20170505_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-macs2-2.1.0.p20170505_2 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.16.4,1.txz Installing py27-numpy-1.16.4,1... `-- Installing gcc8-8.3.0_2... | `-- Installing binutils-2.32_1,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.32_1,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ......... done `-- Extracting gcc8-8.3.0_2: .......... done `-- Installing openblas-0.2.20_8,1... `-- Extracting openblas-0.2.20_8,1: ......... done `-- Installing py27-setuptools-41.0.1... | `-- Installing python27-2.7.16_1... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libressl-2.9.2... | | `-- Extracting libressl-2.9.2: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing readline-8.0.0... | | `-- Extracting readline-8.0.0: .......... done | `-- Extracting python27-2.7.16_1: .......... done `-- Extracting py27-setuptools-41.0.1: .......... done `-- Installing suitesparse-5.2.0_3... | `-- Installing lapack-3.5.0_7... | | `-- Installing blas-3.5.0_5... | | `-- Extracting blas-3.5.0_5: ....... done | `-- Extracting lapack-3.5.0_7: .......... done | `-- Installing metis-5.1.0_7... | `-- Extracting metis-5.1.0_7: .......... done `-- Extracting suitesparse-5.2.0_3: .......... done Extracting py27-numpy-1.16.4,1: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from python27-2.7.16_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from py27-setuptools-41.0.1: ******************************************************************* Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. ******************************************************************* Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-macs2-2.1.0.p20170505_2 depends on package: py27-numpy>0 - found ===> Returning to build of py27-macs2-2.1.0.p20170505_2 ===> py27-macs2-2.1.0.p20170505_2 depends on executable: cython-2.7 - not found ===> Installing existing package /packages/All/py27-cython-0.29_1.txz Installing py27-cython-0.29_1... Extracting py27-cython-0.29_1: .......... done ===> py27-macs2-2.1.0.p20170505_2 depends on executable: cython-2.7 - found ===> Returning to build of py27-macs2-2.1.0.p20170505_2 ===> py27-macs2-2.1.0.p20170505_2 depends on package: py27-setuptools>0 - found ===> py27-macs2-2.1.0.p20170505_2 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-macs2-2.1.0.p20170505_2 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-macs2-2.1.0.p20170505_2 running build running build_py creating build creating build/lib.dragonfly-5.6-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/filterdup_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/randsample_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/bdgopt_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/bdgcmp_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/callpeak_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/OptValidator.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/bdgbroadcall_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/Constants.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/refinepeak_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/pileup_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/predictd_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/OutputWriter.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/cmbreps_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/bdgpeakcall_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/diffpeak_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 copying MACS2/bdgdiff_cmd.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 creating build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO copying MACS2/IO/BinKeeper.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO copying MACS2/IO/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO creating build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/data copying MACS2/data/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/data copying MACS2/data/g0.01.dat -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/data copying MACS2/data/g0.05.dat -> build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/data running build_ext cythoning MACS2/Prob.pyx to MACS2/Prob.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/Prob.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.Prob' extension creating build/temp.dragonfly-5.6-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2 cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/Prob.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Prob.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Prob.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Prob.so cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/IO/Parser.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.Parser' extension creating build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/IO/Parser.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/Parser.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/Parser.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/Parser.so cythoning MACS2/Pileup.pyx to MACS2/Pileup.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/Pileup.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.Pileup' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/Pileup.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Pileup.o -w -O3 -ffast-math cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/cPosValCalculation.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/cPosValCalculation.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Pileup.o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/cPosValCalculation.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Pileup.so cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/PeakModel.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.PeakModel' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/PeakModel.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/PeakModel.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/PeakModel.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/PeakModel.so cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/PeakDetect.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.PeakDetect' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c MACS2/PeakDetect.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/PeakDetect.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/PeakDetect.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/PeakDetect.so cythoning MACS2/Signal.pyx to MACS2/Signal.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/Signal.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.Signal' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/Signal.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Signal.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Signal.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Signal.so cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/IO/PeakIO.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.PeakIO' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c MACS2/IO/PeakIO.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/PeakIO.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/PeakIO.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/PeakIO.so cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/IO/BedGraphIO.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.BedGraphIO' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c MACS2/IO/BedGraphIO.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/BedGraphIO.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/BedGraphIO.so cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/IO/FixWidthTrack.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.FixWidthTrack' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/IO/FixWidthTrack.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/FixWidthTrack.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/FixWidthTrack.so cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/IO/PairedEndTrack.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.PairedEndTrack' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/IO/PairedEndTrack.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/PairedEndTrack.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/PairedEndTrack.so cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/IO/BedGraph.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.BedGraph' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c MACS2/IO/BedGraph.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/BedGraph.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/BedGraph.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/BedGraph.so cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/IO/ScoreTrack.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.ScoreTrack' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/IO/ScoreTrack.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/ScoreTrack.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/ScoreTrack.so cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/IO/CallPeakUnit.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.CallPeakUnit' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/IO/CallPeakUnit.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/CallPeakUnit.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/CallPeakUnit.so cythoning MACS2/hashtable.pyx to MACS2/hashtable.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/hashtable.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: MACS2/khash.pxd:67:21: Declarations should not be declared inline. warning: MACS2/khash.pxd:68:32: Declarations should not be declared inline. warning: MACS2/khash.pxd:69:30: Declarations should not be declared inline. warning: MACS2/khash.pxd:70:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:71:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:72:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:73:28: Declarations should not be declared inline. warning: MACS2/khash.pxd:83:23: Declarations should not be declared inline. warning: MACS2/khash.pxd:84:34: Declarations should not be declared inline. warning: MACS2/khash.pxd:85:32: Declarations should not be declared inline. warning: MACS2/khash.pxd:86:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:87:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:88:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:89:30: Declarations should not be declared inline. building 'MACS2.hashtable' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IMACS2/ -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/hashtable.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/hashtable.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/hashtable.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/hashtable.so cythoning MACS2/Statistics.pyx to MACS2/Statistics.c /usr/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-macs2/MACS-6946b2f/MACS2/Statistics.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: MACS2/khash.pxd:67:21: Declarations should not be declared inline. warning: MACS2/khash.pxd:68:32: Declarations should not be declared inline. warning: MACS2/khash.pxd:69:30: Declarations should not be declared inline. warning: MACS2/khash.pxd:70:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:71:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:72:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:73:28: Declarations should not be declared inline. warning: MACS2/khash.pxd:83:23: Declarations should not be declared inline. warning: MACS2/khash.pxd:84:34: Declarations should not be declared inline. warning: MACS2/khash.pxd:85:32: Declarations should not be declared inline. warning: MACS2/khash.pxd:86:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:87:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:88:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:89:30: Declarations should not be declared inline. building 'MACS2.Statistics' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IMACS2/ -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/Statistics.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Statistics.o -w -O3 -ffast-math cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IMACS2/ -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c MACS2/cStatistics.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/cStatistics.o -w -O3 -ffast-math cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Statistics.o build/temp.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/cStatistics.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Statistics.so running build_scripts creating build/scripts-2.7 copying and adjusting bin/macs2 -> build/scripts-2.7 changing mode of build/scripts-2.7/macs2 from 644 to 755 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-macs2-2.1.0.p20170505_2 depends on package: py27-setuptools>0 - found ===> py27-macs2-2.1.0.p20170505_2 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-macs2-2.1.0.p20170505_2 ===> Generating temporary packing list running install running build running build_py running build_ext skipping 'MACS2/Prob.c' Cython extension (up-to-date) skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date) skipping 'MACS2/Pileup.c' Cython extension (up-to-date) skipping 'MACS2/PeakModel.c' Cython extension (up-to-date) skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date) skipping 'MACS2/Signal.c' Cython extension (up-to-date) skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date) skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date) skipping 'MACS2/hashtable.c' Cython extension (up-to-date) skipping 'MACS2/Statistics.c' Cython extension (up-to-date) running build_scripts running install_lib creating /construction/biology/py-macs2/stage/usr/local/lib/python2.7 creating /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages creating /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Signal.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/PeakDetect.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Prob.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/PeakModel.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/callpeak_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/__init__.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/OptValidator.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Constants.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/bdgbroadcall_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/pileup_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/diffpeak_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 creating /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/data copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/data/g0.01.dat -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/data copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/data/g0.05.dat -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/data copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/data/__init__.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/data copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/cmbreps_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/bdgpeakcall_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/filterdup_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/randsample_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/bdgcmp_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 creating /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/PairedEndTrack.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/BinKeeper.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/__init__.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/CallPeakUnit.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/PeakIO.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/BedGraph.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/Parser.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/ScoreTrack.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/FixWidthTrack.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/IO/BedGraphIO.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/refinepeak_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/bdgopt_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/predictd_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/bdgdiff_cmd.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/OutputWriter.py -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/hashtable.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Statistics.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 copying build/lib.dragonfly-5.6-SYNTH-x86_64-2.7/MACS2/Pileup.so -> /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2 byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/callpeak_cmd.py to callpeak_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/__init__.py to __init__.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/OptValidator.py to OptValidator.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/Constants.py to Constants.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/pileup_cmd.py to pileup_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/data/__init__.py to __init__.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/filterdup_cmd.py to filterdup_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/randsample_cmd.py to randsample_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO/BinKeeper.py to BinKeeper.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/IO/__init__.py to __init__.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/predictd_cmd.py to predictd_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.pyc byte-compiling /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/OutputWriter.py to OutputWriter.pyc writing byte-compilation script '/tmp/tmpgfInRi.py' /usr/local/bin/python2.7 -O /tmp/tmpgfInRi.py removing /tmp/tmpgfInRi.py running install_egg_info running egg_info creating MACS2.egg-info writing requirements to MACS2.egg-info/requires.txt writing MACS2.egg-info/PKG-INFO writing top-level names to MACS2.egg-info/top_level.txt writing dependency_links to MACS2.egg-info/dependency_links.txt writing manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'MANIFEST' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2-2.1.1.20160309-py2.7.egg-info running install_scripts copying build/scripts-2.7/macs2 -> /construction/biology/py-macs2/stage/usr/local/bin changing mode of /construction/biology/py-macs2/stage/usr/local/bin/macs2 to 755 writing list of installed files to '/construction/biology/py-macs2/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/macs2 --> bin/macs2-2.7 Link: @bin/macs2 --> bin/macs2-2.7 /usr/bin/strip /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/*.so /construction/biology/py-macs2/stage/usr/local/lib/python2.7/site-packages/MACS2/*/*.so ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-macs2-2.1.0.p20170505_2 file sizes/checksums [87]: . done packing files [87]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 24 JUL 2019 at 17:35:22 UTC Duration: 00:05:58