=> Building biology/py-fastTSNE@py36 Started : Tuesday, 23 JUL 2019 at 16:17:38 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/biology/py-fastTSNE XDG_CONFIG_HOME=/construction/biology/py-fastTSNE HOME=/construction/biology/py-fastTSNE TMPDIR="/tmp" PATH=/construction/biology/py-fastTSNE/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-fastTSNE XDG_CONFIG_HOME=/construction/biology/py-fastTSNE HOME=/construction/biology/py-fastTSNE TMPDIR="/tmp" PATH=/construction/biology/py-fastTSNE/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/py-fastTSNE/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/fastTSNE" EXAMPLESDIR="share/examples/fastTSNE" DATADIR="share/fastTSNE" WWWDIR="www/fastTSNE" ETCDIR="etc/fastTSNE" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/fastTSNE DOCSDIR=/usr/local/share/doc/fastTSNE EXAMPLESDIR=/usr/local/share/examples/fastTSNE WWWDIR=/usr/local/www/fastTSNE ETCDIR=/usr/local/etc/fastTSNE -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-fastTSNE-0.2.13_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> py36-fastTSNE-0.2.13_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-fastTSNE-0.2.13_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-fastTSNE-0.2.13_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-fastTSNE-0.2.13_1 for building => SHA256 Checksum OK for fastTSNE-0.2.13.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-fastTSNE-0.2.13_1 for building ===> Extracting for py36-fastTSNE-0.2.13_1 => SHA256 Checksum OK for fastTSNE-0.2.13.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-fastTSNE-0.2.13_1 ===> Applying ports patches for py36-fastTSNE-0.2.13_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-fastTSNE-0.2.13_1 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.4,1.txz Installing py36-numpy-1.16.4,1... `-- Installing gcc8-8.3.0_2... | `-- Installing binutils-2.32_1,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.32_1,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ......... done `-- Extracting gcc8-8.3.0_2: .......... done `-- Installing openblas-0.2.20_8,1... `-- Extracting openblas-0.2.20_8,1: ......... done `-- Installing py36-setuptools-41.0.1... | `-- Installing python36-3.6.9... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libressl-2.9.2... | | `-- Extracting libressl-2.9.2: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing readline-8.0.0... | | `-- Extracting readline-8.0.0: .......... done | `-- Extracting python36-3.6.9: .......... done `-- Extracting py36-setuptools-41.0.1: .......... done `-- Installing suitesparse-5.2.0_3... | `-- Installing lapack-3.5.0_7... | | `-- Installing blas-3.5.0_5... | | `-- Extracting blas-3.5.0_5: ....... done | `-- Extracting lapack-3.5.0_7: .......... done | `-- Installing metis-5.1.0_7... | `-- Extracting metis-5.1.0_7: .......... done `-- Extracting suitesparse-5.2.0_3: .......... done Extracting py36-numpy-1.16.4,1: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-fastTSNE-0.2.13_1 depends on package: py36-numpy>0 - found ===> Returning to build of py36-fastTSNE-0.2.13_1 ===> py36-fastTSNE-0.2.13_1 depends on package: py36-setuptools>0 - found ===> py36-fastTSNE-0.2.13_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py36-fastTSNE-0.2.13_1 depends on shared library: libfftw3.so - not found ===> Installing existing package /packages/All/fftw3-3.3.8_3.txz Installing fftw3-3.3.8_3... Extracting fftw3-3.3.8_3: .......... done ===> py36-fastTSNE-0.2.13_1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Returning to build of py36-fastTSNE-0.2.13_1 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-fastTSNE-0.2.13_1 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-fastTSNE-0.2.13_1 running build running build_py creating build creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6 creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/examples copying examples/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/examples copying examples/utils.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/examples creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tests copying tests/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tests copying tests/test_affinities.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tests copying tests/test_correctness.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tests copying tests/test_tsne.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tests creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/benchmarks copying benchmarks/benchmark_tsne.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/benchmarks copying benchmarks/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/benchmarks creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE copying fastTSNE/initialization.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE copying fastTSNE/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE copying fastTSNE/tsne.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE copying fastTSNE/affinity.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE copying fastTSNE/nearest_neighbors.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE copying fastTSNE/metrics.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE copying fastTSNE/callbacks.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_matrix_mul copying fastTSNE/_matrix_mul/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_matrix_mul creating build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent copying fastTSNE/pynndescent/rp_trees.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent copying fastTSNE/pynndescent/__init__.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent copying fastTSNE/pynndescent/distances.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent copying fastTSNE/pynndescent/utils.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent copying fastTSNE/pynndescent/pynndescent_.py -> build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent running build_ext building 'fastTSNE.quad_tree' extension creating build/temp.dragonfly-5.6-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c fastTSNE/quad_tree.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/quad_tree.o -fopenmp -O3 cc -shared -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/quad_tree.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/quad_tree.so -fopenmp -O3 building 'fastTSNE._tsne' extension cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c fastTSNE/_tsne.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_tsne.o -fopenmp -O3 In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from fastTSNE/_tsne.c:594: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_tsne.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_tsne.so -fopenmp -O3 building 'fastTSNE.kl_divergence' extension cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c fastTSNE/kl_divergence.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/kl_divergence.o -fopenmp -O3 In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from fastTSNE/kl_divergence.c:594: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/kl_divergence.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/kl_divergence.so -fopenmp -O3 building 'fastTSNE._matrix_mul.matrix_mul' extension creating build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_matrix_mul cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c fastTSNE/_matrix_mul/matrix_mul_fftw3.c -o build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_matrix_mul/matrix_mul_fftw3.o -fopenmp -O3 -lfftw3 -lm In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from fastTSNE/_matrix_mul/matrix_mul_fftw3.c:600: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_matrix_mul/matrix_mul_fftw3.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_matrix_mul/matrix_mul.so -fopenmp -O3 -lfftw3 -lm -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-fastTSNE-0.2.13_1 depends on package: py36-numpy>0 - found ===> py36-fastTSNE-0.2.13_1 depends on package: py36-numba>=0.38.1 - not found ===> Installing existing package /packages/All/py36-numba-0.40.1_4.txz Installing py36-numba-0.40.1_4... `-- Installing py36-llvmlite-0.25.0_2... | `-- Installing libc++-8.0.0... | | `-- Installing libcxxrt-20180311... | | `-- Extracting libcxxrt-20180311: .......... done | `-- Extracting libc++-8.0.0: .......... done | `-- Installing llvm60-6.0.1_6... | | `-- Installing libedit-3.1.20190324,1... | | `-- Extracting libedit-3.1.20190324,1: .......... done | | `-- Installing libxml2-2.9.9... | | `-- Extracting libxml2-2.9.9: .......... done | | `-- Installing perl5-5.28.2... | | `-- Extracting perl5-5.28.2: .......... done | `-- Extracting llvm60-6.0.1_6: .......... done `-- Extracting py36-llvmlite-0.25.0_2: .......... done `-- Installing tbb-2019.5... `-- Extracting tbb-2019.5: .......... done Extracting py36-numba-0.40.1_4: .......... done Message from perl5-5.28.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> py36-fastTSNE-0.2.13_1 depends on package: py36-numba>=0.38.1 - found ===> Returning to build of py36-fastTSNE-0.2.13_1 ===> py36-fastTSNE-0.2.13_1 depends on package: py36-scipy>0 - not found ===> Installing existing package /packages/All/py36-scipy-1.2.2.txz Installing py36-scipy-1.2.2... Extracting py36-scipy-1.2.2: .......... done ===> py36-fastTSNE-0.2.13_1 depends on package: py36-scipy>0 - found ===> Returning to build of py36-fastTSNE-0.2.13_1 ===> py36-fastTSNE-0.2.13_1 depends on package: py36-scikit-learn>=0.20.0 - not found ===> Installing existing package /packages/All/py36-scikit-learn-0.20.3.txz Installing py36-scikit-learn-0.20.3... `-- Installing cblas-1.0_11... `-- Extracting cblas-1.0_11: ......... done Extracting py36-scikit-learn-0.20.3: .......... done Message from cblas-1.0_11: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-fastTSNE-0.2.13_1 depends on package: py36-scikit-learn>=0.20.0 - found ===> Returning to build of py36-fastTSNE-0.2.13_1 ===> py36-fastTSNE-0.2.13_1 depends on package: py36-setuptools>0 - found ===> py36-fastTSNE-0.2.13_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-fastTSNE-0.2.13_1 ===> Generating temporary packing list running install running build running build_py running build_ext running install_lib creating /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6 creating /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages creating /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/examples copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/examples/__init__.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/examples copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/examples/utils.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/examples creating /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/kl_divergence.so -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_tsne.so -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/quad_tree.so -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/tsne.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/initialization.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE creating /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent/distances.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent/pynndescent_.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent/utils.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent/__init__.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/pynndescent/rp_trees.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/__init__.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE creating /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/_matrix_mul copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_matrix_mul/matrix_mul.so -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/_matrix_mul copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/_matrix_mul/__init__.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/_matrix_mul copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/nearest_neighbors.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/callbacks.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/affinity.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/fastTSNE/metrics.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE creating /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tests/test_tsne.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tests/test_correctness.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tests/test_affinities.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/tests/__init__.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/tests creating /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/benchmarks copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/benchmarks/__init__.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/benchmarks copying build/lib.dragonfly-5.6-SYNTH-x86_64-3.6/benchmarks/benchmark_tsne.py -> /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/benchmarks byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/examples/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/examples/utils.py to utils.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/tsne.py to tsne.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/initialization.py to initialization.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent/distances.py to distances.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent/pynndescent_.py to pynndescent_.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent/utils.py to utils.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/pynndescent/rp_trees.py to rp_trees.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/_matrix_mul/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/nearest_neighbors.py to nearest_neighbors.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/callbacks.py to callbacks.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/affinity.py to affinity.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE/metrics.py to metrics.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/tests/test_tsne.py to test_tsne.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/tests/test_correctness.py to test_correctness.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/tests/test_affinities.py to test_affinities.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/benchmarks/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/benchmarks/benchmark_tsne.py to benchmark_tsne.cpython-36.pyc writing byte-compilation script '/tmp/tmp9h402dhw.py' /usr/local/bin/python3.6 /tmp/tmp9h402dhw.py removing /tmp/tmp9h402dhw.py running install_egg_info running egg_info writing fastTSNE.egg-info/PKG-INFO writing dependency_links to fastTSNE.egg-info/dependency_links.txt writing requirements to fastTSNE.egg-info/requires.txt writing top-level names to fastTSNE.egg-info/top_level.txt reading manifest file 'fastTSNE.egg-info/SOURCES.txt' writing manifest file 'fastTSNE.egg-info/SOURCES.txt' Copying fastTSNE.egg-info to /construction/biology/py-fastTSNE/stage/usr/local/lib/python3.6/site-packages/fastTSNE-0.2.13-py3.6.egg-info running install_scripts writing list of installed files to '/construction/biology/py-fastTSNE/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-fastTSNE-0.2.13_1 file sizes/checksums [75]: . done packing files [75]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Tuesday, 23 JUL 2019 at 16:20:31 UTC Duration: 00:02:52