=> Building biology/psi88 Started : Wednesday, 24 JUL 2019 at 17:23:17 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for psi88-1.0_15: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/biology/psi88 XDG_CONFIG_HOME=/construction/biology/psi88 HOME=/construction/biology/psi88 TMPDIR="/tmp" PATH=/construction/biology/psi88/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/biology/psi88 XDG_CONFIG_HOME=/construction/biology/psi88 HOME=/construction/biology/psi88 TMPDIR="/tmp" PATH=/construction/biology/psi88/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- BIN=/construction/biology/psi88/stage/usr/local/bin DESTDIR=/construction/biology/psi88/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/psi88" EXAMPLESDIR="share/examples/psi88" DATADIR="share/psi88" WWWDIR="www/psi88" ETCDIR="etc/psi88" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/psi88 DOCSDIR=/usr/local/share/doc/psi88 EXAMPLESDIR=/usr/local/share/examples/psi88 WWWDIR=/usr/local/www/psi88 ETCDIR=/usr/local/etc/psi88 -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> NOTICE: The psi88 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> psi88-1.0_15 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> psi88-1.0_15 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of psi88-1.0_15 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> NOTICE: The psi88 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by psi88-1.0_15 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> NOTICE: The psi88 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by psi88-1.0_15 for building => SHA256 Checksum OK for psi88.tar.Z. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> NOTICE: The psi88 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by psi88-1.0_15 for building ===> Extracting for psi88-1.0_15 => SHA256 Checksum OK for psi88.tar.Z. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for psi88-1.0_15 ===> Applying ports patches for psi88-1.0_15 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> psi88-1.0_15 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_2.txz Installing gcc8-8.3.0_2... `-- Installing binutils-2.32_1,1... | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.20.1: .......... done `-- Extracting binutils-2.32_1,1: .......... done `-- Installing gmp-6.1.2_1... `-- Extracting gmp-6.1.2_1: .......... done `-- Installing mpc-1.1.0_2... | `-- Installing mpfr-4.0.2... | `-- Extracting mpfr-4.0.2: .......... done `-- Extracting mpc-1.1.0_2: ......... done Extracting gcc8-8.3.0_2: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> psi88-1.0_15 depends on executable: gfortran8 - found ===> Returning to build of psi88-1.0_15 ===> psi88-1.0_15 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for psi88-1.0_15 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for psi88-1.0_15 --- all --- (cd src/ && make all) --- PSI1 --- --- PSICON --- --- PSI2CT --- --- PSI2HP --- --- PSI2PS --- --- PSI1 --- gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 psi1.f -o PSI1 -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin --- PSICON --- gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 psicon.f -o PSICON -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin --- PSI2CT --- gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 psi2.f ctplot.f -o PSI2CT -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin --- PSI2HP --- gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 psi2.f hpplot.f -o PSI2HP -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin --- PSI2PS --- gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 psi2.f psplot.f -o PSI2PS -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin --- PREPLOT --- gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 preplot.f -o PREPLOT -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin --- PSI2HP --- hpplot.f:168:20: hpplot.f:165:72: DO 20 I = 2, N 2 hpplot.f:168:20: X2 = (X(I)-XMIN)/XINC 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) hpplot.f:169:20: hpplot.f:165:72: DO 20 I = 2, N 2 hpplot.f:169:20: Y2 = (Y(I)-YMIN)/YINC 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) --- PSI2PS --- psplot.f:445:20: psplot.f:442:72: do 20 i = 2, n 2 psplot.f:445:20: x2 = (x(i)-xmin)/xinc 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) psplot.f:446:20: psplot.f:442:72: do 20 i = 2, n 2 psplot.f:446:20: y2 = (y(i)-ymin)/yinc 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) --- PSI2CT --- ctplot.f:69:29: CALL SYMBOL (XA,YA,.15,STRING,ANGLE,K) 1 Warning: Rank mismatch in argument 'string' at (1) (scalar and rank-1) [-Wargument-mismatch] ctplot.f:110:20: ctplot.f:107:72: DO 20 I = 2, N 2 ctplot.f:110:20: X2 = (X(I)-XMIN)/XINC 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) ctplot.f:111:20: ctplot.f:107:72: DO 20 I = 2, N 2 ctplot.f:111:20: Y2 = (Y(I)-YMIN)/YINC 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> psi88-1.0_15 depends on executable: gfortran8 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for psi88-1.0_15 ===> Generating temporary packing list (cd src/ && make install) mv PSI1 /construction/biology/psi88/stage/usr/local/bin chmod +rx /construction/biology/psi88/stage/usr/local/bin/PSI1 mv PSICON /construction/biology/psi88/stage/usr/local/bin chmod +rx /construction/biology/psi88/stage/usr/local/bin/PSICON mv PREPLOT /construction/biology/psi88/stage/usr/local/bin chmod +rx /construction/biology/psi88/stage/usr/local/bin/PREPLOT mv PSI2* /construction/biology/psi88/stage/usr/local/bin chmod +rx /construction/biology/psi88/stage/usr/local/bin/PSI2* ln -s PSI2PS /construction/biology/psi88/stage/usr/local/bin/PSI2 install -m 555 /construction/biology/psi88/psi88/unix/preplot /construction/biology/psi88/stage/usr/local/bin install -m 555 /construction/biology/psi88/psi88/unix/rpsi1 /construction/biology/psi88/stage/usr/local/bin install -m 555 /construction/biology/psi88/psi88/unix/rpsi2 /construction/biology/psi88/stage/usr/local/bin install -m 555 /construction/biology/psi88/psi88/unix/rpsicon /construction/biology/psi88/stage/usr/local/bin install -m 0644 /construction/biology/psi88/psi88/README /construction/biology/psi88/stage/usr/local/share/doc/psi88 install -m 0644 /construction/biology/psi88/psi88/psi88.doc /construction/biology/psi88/stage/usr/local/share/doc/psi88 install -m 0644 /construction/biology/psi88/psi88/examples/* /construction/biology/psi88/stage/usr/local/share/examples/psi88 ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for psi88-1.0_15 file sizes/checksums [28]: . done packing files [28]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 24 JUL 2019 at 17:23:53 UTC Duration: 00:00:35