=> Building biology/phylip Started : Wednesday, 24 JUL 2019 at 17:15:04 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for phylip-3.697,1: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/biology/phylip XDG_CONFIG_HOME=/construction/biology/phylip HOME=/construction/biology/phylip TMPDIR="/tmp" PATH=/construction/biology/phylip/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/phylip XDG_CONFIG_HOME=/construction/biology/phylip HOME=/construction/biology/phylip TMPDIR="/tmp" PATH=/construction/biology/phylip/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing -DUNX" DFLAGS="-pipe -O2 -fno-strict-aliasing -DX -I/usr/local/include" DLIBS="-L/usr/local/lib -lX11 -lXaw -lXt -lm" DESTDIR=/construction/biology/phylip/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/phylip" EXAMPLESDIR="share/examples/phylip" DATADIR="share/phylip" WWWDIR="www/phylip" ETCDIR="etc/phylip" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phylip DOCSDIR=/usr/local/share/doc/phylip EXAMPLESDIR=/usr/local/share/examples/phylip WWWDIR=/usr/local/www/phylip ETCDIR=/usr/local/etc/phylip -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> NOTICE: The phylip port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License BSD2CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> phylip-3.697,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> phylip-3.697,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of phylip-3.697,1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> NOTICE: The phylip port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by phylip-3.697,1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> NOTICE: The phylip port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by phylip-3.697,1 for building => SHA256 Checksum OK for phylip-3.697.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> NOTICE: The phylip port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by phylip-3.697,1 for building ===> Extracting for phylip-3.697,1 => SHA256 Checksum OK for phylip-3.697.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for phylip-3.697,1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> phylip-3.697,1 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.0.7.txz Installing bash-5.0.7... `-- Installing gettext-runtime-0.20.1... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gettext-runtime-0.20.1: .......... done `-- Installing ncurses-6.1.20190525... `-- Extracting ncurses-6.1.20190525: .......... done Extracting bash-5.0.7: .......... done ===> phylip-3.697,1 depends on executable: bash - found ===> Returning to build of phylip-3.697,1 ===> phylip-3.697,1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... Extracting gmake-4.2.1_3: .......... done ===> phylip-3.697,1 depends on executable: gmake - found ===> Returning to build of phylip-3.697,1 ===> phylip-3.697,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Installing existing package /packages/All/libX11-1.6.8,1.txz Installing libX11-1.6.8,1... `-- Installing libXau-1.0.9... `-- Extracting libXau-1.0.9: .......... done `-- Installing libXdmcp-1.1.3... | `-- Installing xorgproto-2019.1... | `-- Extracting xorgproto-2019.1: .......... done `-- Extracting libXdmcp-1.1.3: ......... done `-- Installing libxcb-1.13.1... | `-- Installing libpthread-stubs-0.4... | `-- Extracting libpthread-stubs-0.4: .... done | `-- Installing libxml2-2.9.9... | `-- Extracting libxml2-2.9.9: .......... done `-- Extracting libxcb-1.13.1: .......... done Extracting libX11-1.6.8,1: .......... done ===> phylip-3.697,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> Returning to build of phylip-3.697,1 ===> phylip-3.697,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - not found ===> Installing existing package /packages/All/libXaw-1.0.13_2,2.txz Installing libXaw-1.0.13_2,2... `-- Installing libXext-1.3.4,1... `-- Extracting libXext-1.3.4,1: .......... done `-- Installing libXmu-1.1.3,1... | `-- Installing libXt-1.2.0,1... | | `-- Installing libICE-1.0.9_3,1... | | `-- Extracting libICE-1.0.9_3,1: .......... done | | `-- Installing libSM-1.2.3,1... | | `-- Extracting libSM-1.2.3,1: .......... done | `-- Extracting libXt-1.2.0,1: .......... done `-- Extracting libXmu-1.1.3,1: .......... done `-- Installing libXp-1.0.3_2,1... `-- Extracting libXp-1.0.3_2,1: .......... done `-- Installing libXpm-3.5.12_2... `-- Extracting libXpm-3.5.12_2: .......... done Extracting libXaw-1.0.13_2,2: .......... done ===> phylip-3.697,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - found ===> Returning to build of phylip-3.697,1 ===> phylip-3.697,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for phylip-3.697,1 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for phylip-3.697,1 gmake[1]: Entering directory '/construction/biology/phylip/phylip-3.697/src' cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o clique.o clique.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o disc.o disc.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o phylip.o phylip.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o consense.o consense.c Building PHYLIP version 3.696 cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o cons.o cons.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o contml.o contml.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o cont.o cont.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o contrast.o contrast.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dnacomp.o dnacomp.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o seq.o seq.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dnadist.o dnadist.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dnainvar.o dnainvar.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dnaml.o dnaml.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dnamlk.o dnamlk.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o mlclock.o mlclock.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o printree.o printree.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dnamove.o dnamove.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o moves.o moves.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dnapars.o dnapars.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dnapenny.o dnapenny.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dolmove.o dolmove.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dollo.o dollo.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dollop.o dollop.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dolpenny.o dolpenny.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o factor.o factor.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o fitch.o fitch.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o dist.o dist.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o gendist.o gendist.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o kitsch.o kitsch.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o mix.o mix.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o wagner.o wagner.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o move.o move.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o neighbor.o neighbor.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o pars.o pars.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o discrete.o discrete.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o penny.o penny.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o proml.o proml.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o promlk.o promlk.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o protdist.o protdist.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o protpars.o protpars.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o restdist.o restdist.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o restml.o restml.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o retree.o retree.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o seqboot.o seqboot.c cc -pipe -O2 -fno-strict-aliasing -DUNX -c -o treedist.o treedist.c cc -pipe -O2 -fno-strict-aliasing -DX -I/usr/local/include -c drawgram.c drawgram.c: In function 'drawgram': drawgram.c:2111:9: warning: implicit declaration of function 'makebox'; did you mean 'makedev'? [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^~~~~~~ makedev cc -pipe -O2 -fno-strict-aliasing -DX -I/usr/local/include -c draw.c cc -pipe -O2 -fno-strict-aliasing -DX -I/usr/local/include -c draw2.c draw.c: In function 'metricforfont': draw.c:2603:53: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2602:15: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2591:49: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2590:11: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2551:48: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbolditalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2550:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2548:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbold_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2547:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2545:44: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesitalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2544:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2542:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2541:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2539:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2538:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2536:46: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helveticabold_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2535:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2532:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helvetica_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2531:5: note: within this loop for (i=31;i<256;++i) ^~~ cc -pipe -O2 -fno-strict-aliasing -DX -I/usr/local/include -shared -fPIC -c drawtree.c cc -pipe -O2 -fno-strict-aliasing -DUNX clique.o disc.o phylip.o -lm -o clique cc -pipe -O2 -fno-strict-aliasing -DUNX consense.o phylip.o cons.o -lm -o consense drawtree.c: In function 'drawtree': drawtree.c:3017:9: warning: implicit declaration of function 'makebox'; did you mean 'makedev'? [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^~~~~~~ makedev cc -pipe -O2 -fno-strict-aliasing -DUNX contml.o cont.o phylip.o -lm -o contml cc -pipe -O2 -fno-strict-aliasing -DUNX contrast.o cont.o phylip.o -lm -o contrast cc -pipe -O2 -fno-strict-aliasing -DUNX dnacomp.o seq.o phylip.o -lm -o dnacomp cc -pipe -O2 -fno-strict-aliasing -DUNX dnadist.o seq.o phylip.o -lm -o dnadist cc -pipe -O2 -fno-strict-aliasing -DUNX dnainvar.o seq.o phylip.o -lm -o dnainvar cc -pipe -O2 -fno-strict-aliasing -DUNX dnaml.o seq.o phylip.o -lm -o dnaml cc -pipe -O2 -fno-strict-aliasing -DUNX dnamlk.o seq.o phylip.o mlclock.o printree.o -lm -o dnamlk cc -pipe -O2 -fno-strict-aliasing -DUNX dnamove.o seq.o moves.o phylip.o -lm -o dnamove cc -pipe -O2 -fno-strict-aliasing -DUNX dnapars.o seq.o phylip.o -lm -o dnapars cc -pipe -O2 -fno-strict-aliasing -DUNX dnapenny.o seq.o phylip.o -lm -o dnapenny cc -pipe -O2 -fno-strict-aliasing -DUNX dolmove.o disc.o moves.o dollo.o phylip.o -lm -o dolmove cc -pipe -O2 -fno-strict-aliasing -DUNX dollop.o disc.o dollo.o phylip.o -lm -o dollop cc -pipe -O2 -fno-strict-aliasing -DUNX dolpenny.o disc.o dollo.o phylip.o -lm -o dolpenny cc -pipe -O2 -fno-strict-aliasing -DUNX factor.o phylip.o -lm -o factor cc -pipe -O2 -fno-strict-aliasing -DUNX fitch.o dist.o phylip.o -lm -o fitch cc -pipe -O2 -fno-strict-aliasing -DUNX gendist.o phylip.o -lm -o gendist cc -pipe -O2 -fno-strict-aliasing -DUNX kitsch.o dist.o phylip.o -lm -o kitsch cc -pipe -O2 -fno-strict-aliasing -DUNX mix.o disc.o wagner.o phylip.o -lm -o mix cc -pipe -O2 -fno-strict-aliasing -DUNX move.o disc.o moves.o wagner.o phylip.o -lm -o move cc -pipe -O2 -fno-strict-aliasing -DUNX neighbor.o dist.o phylip.o -lm -o neighbor cc -pipe -O2 -fno-strict-aliasing -DUNX pars.o discrete.o phylip.o -lm -o pars cc -pipe -O2 -fno-strict-aliasing -DUNX penny.o disc.o wagner.o phylip.o -lm -o penny cc -pipe -O2 -fno-strict-aliasing -DUNX proml.o seq.o phylip.o -lm -o proml cc -pipe -O2 -fno-strict-aliasing -DUNX promlk.o seq.o phylip.o mlclock.o printree.o -lm -o promlk cc -pipe -O2 -fno-strict-aliasing -DUNX protdist.o seq.o phylip.o -lm -o protdist cc -pipe -O2 -fno-strict-aliasing -DUNX protpars.o seq.o phylip.o -lm -o protpars cc -pipe -O2 -fno-strict-aliasing -DUNX restdist.o seq.o phylip.o -lm -o restdist cc -pipe -O2 -fno-strict-aliasing -DUNX restml.o seq.o phylip.o -lm -o restml cc -pipe -O2 -fno-strict-aliasing -DUNX retree.o moves.o phylip.o -lm -o retree cc -pipe -O2 -fno-strict-aliasing -DUNX seqboot.o seq.o phylip.o -lm -o seqboot cc -pipe -O2 -fno-strict-aliasing -DUNX treedist.o cons.o phylip.o -lm -o treedist cc -pipe -O2 -fno-strict-aliasing -DX -I/usr/local/include draw.o draw2.o drawgram.o phylip.o -L/usr/local/lib -lX11 -lXaw -lXt -lm -o drawgram cc -pipe -O2 -fno-strict-aliasing -DX -I/usr/local/include draw.o draw2.o drawtree.o phylip.o -L/usr/local/lib -lX11 -lXaw -lXt -lm -o drawtree cc -pipe -O2 -fno-strict-aliasing -DUNX -o libdrawgram.so -shared -fPIC drawgram.c draw.c draw2.c phylip.c cc -pipe -O2 -fno-strict-aliasing -DUNX -o libdrawtree.so -shared -fPIC drawtree.c draw.c draw2.c phylip.c drawtree.c: In function 'drawtree': drawtree.c:3017:9: warning: implicit declaration of function 'makebox'; did you mean 'makedev'? [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^~~~~~~ makedev drawgram.c: In function 'drawgram': drawgram.c:2111:9: warning: implicit declaration of function 'makebox'; did you mean 'makedev'? [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^~~~~~~ makedev draw.c: In function 'metricforfont': draw.c:2603:53: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2602:15: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2591:49: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2590:11: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2551:48: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbolditalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2550:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2548:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbold_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2547:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2545:44: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesitalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2544:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2542:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2541:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2539:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2538:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2536:46: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helveticabold_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2535:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2532:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helvetica_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2531:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c: In function 'metricforfont': draw.c:2603:53: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2602:15: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2591:49: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2590:11: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2551:48: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbolditalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2550:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2548:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbold_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2547:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2545:44: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesitalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2544:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2542:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2541:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2539:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2538:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2536:46: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helveticabold_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2535:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2532:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helvetica_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2531:5: note: within this loop for (i=31;i<256;++i) ^~~ Finished compiling. gmake[1]: Leaving directory '/construction/biology/phylip/phylip-3.697/src' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> phylip-3.697,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> phylip-3.697,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - found ===> phylip-3.697,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for phylip-3.697,1 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/phylip/phylip-3.697/src' Building PHYLIP version 3.696 Finished compiling. Installing PHYLIP v3.6 binaries in ../exe Installing dynamic libraries in ../exe Installing jar files in ../exe Installing font files in ../exe Finished installation. Removing object files to save space Finished removing object files. Now will remove executable files from the current directory, but not from the executables directory. (If some are not here, the makefile will terminate with an error message but this is not a problem) Removing executables from this directory Finished cleanup. Done. gmake[1]: Leaving directory '/construction/biology/phylip/phylip-3.697/src' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for phylip-3.697,1 file sizes/checksums [93]: . done packing files [93]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 24 JUL 2019 at 17:15:48 UTC Duration: 00:00:43