=> Building biology/libbigwig Started : Wednesday, 24 JUL 2019 at 17:04:36 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.6-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.6-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/biology/libbigwig XDG_CONFIG_HOME=/construction/biology/libbigwig HOME=/construction/biology/libbigwig TMPDIR="/tmp" PATH=/construction/biology/libbigwig/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/libbigwig XDG_CONFIG_HOME=/construction/biology/libbigwig HOME=/construction/biology/libbigwig TMPDIR="/tmp" PATH=/construction/biology/libbigwig/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- LDFLAGS=-L/usr/local/lib DESTDIR=/construction/biology/libbigwig/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- OSREL=5.6 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libbigwig" EXAMPLESDIR="share/examples/libbigwig" DATADIR="share/libbigwig" WWWDIR="www/libbigwig" ETCDIR="etc/libbigwig" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libbigwig DOCSDIR=/usr/local/share/doc/libbigwig EXAMPLESDIR=/usr/local/share/examples/libbigwig WWWDIR=/usr/local/www/libbigwig ETCDIR=/usr/local/etc/libbigwig -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.6 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500601 OSVERSION=9999999 OSREL=5.6 _OSRELEASE=5.6-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License MIT accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> libbigwig-0.4.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> libbigwig-0.4.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libbigwig-0.4.4 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License MIT accepted by the user => dpryan79-libBigWig-0.4.4_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/dpryan79/libBigWig/tar.gz/0.4.4?dummy=/dpryan79-libBigWig-0.4.4_GH0.tar.gz fetch: https://codeload.github.com/dpryan79/libBigWig/tar.gz/0.4.4?dummy=/dpryan79-libBigWig-0.4.4_GH0.tar.gz: size unknown fetch: https://codeload.github.com/dpryan79/libBigWig/tar.gz/0.4.4?dummy=/dpryan79-libBigWig-0.4.4_GH0.tar.gz: size of remote file is not known dpryan79-libBigWig-0.4.4_GH0.tar.gz 266 kB 697 kBps 01s ===> Fetching all distfiles required by libbigwig-0.4.4 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by libbigwig-0.4.4 for building => SHA256 Checksum OK for dpryan79-libBigWig-0.4.4_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by libbigwig-0.4.4 for building ===> Extracting for libbigwig-0.4.4 => SHA256 Checksum OK for dpryan79-libBigWig-0.4.4_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for libbigwig-0.4.4 ===> Applying ports patches for libbigwig-0.4.4 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> libbigwig-0.4.4 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... `-- Installing gettext-runtime-0.20.1... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gettext-runtime-0.20.1: .......... done Extracting gmake-4.2.1_3: .......... done ===> libbigwig-0.4.4 depends on executable: gmake - found ===> Returning to build of libbigwig-0.4.4 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> libbigwig-0.4.4 depends on shared library: libcurl.so - not found ===> Installing existing package /packages/All/curl-7.65.1_1.txz Installing curl-7.65.1_1... `-- Installing ca_root_nss-3.45... `-- Extracting ca_root_nss-3.45: ........ done `-- Installing libnghttp2-1.39.1... `-- Extracting libnghttp2-1.39.1: .......... done `-- Installing libressl-2.9.2... `-- Extracting libressl-2.9.2: .......... done Extracting curl-7.65.1_1: .......... done Message from ca_root_nss-3.45: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> libbigwig-0.4.4 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so) ===> Returning to build of libbigwig-0.4.4 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for libbigwig-0.4.4 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for libbigwig-0.4.4 gmake[1]: Entering directory '/construction/biology/libbigwig/libBigWig-0.4.4' cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -c -o io.o io.c cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -c -o bwValues.o bwValues.c cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -c -o bwRead.o bwRead.c cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -c -o bwStats.o bwStats.c cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -c -o bwWrite.o bwWrite.c cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fpic -c -o io.pico io.c cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fpic -c -o bwValues.pico bwValues.c cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fpic -c -o bwRead.pico bwRead.c cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fpic -c -o bwStats.pico bwStats.c cc -I. -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fpic -c -o bwWrite.pico bwWrite.c ar -rcs libBigWig.a io.o bwValues.o bwRead.o bwStats.o bwWrite.o ranlib libBigWig.a cc -shared -L/usr/local/lib -o libBigWig.so io.pico bwValues.pico bwRead.pico bwStats.pico bwWrite.pico -lcurl -lm -lz gmake[1]: Leaving directory '/construction/biology/libbigwig/libBigWig-0.4.4' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for libbigwig-0.4.4 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/libbigwig/libBigWig-0.4.4' install -d /usr/local/lib /construction/biology/libbigwig/stage/usr/local/include install libBigWig.a /construction/biology/libbigwig/stage/usr/local/lib install libBigWig.so /construction/biology/libbigwig/stage/usr/local/lib install *.h /construction/biology/libbigwig/stage/usr/local/include gmake[1]: Leaving directory '/construction/biology/libbigwig/libBigWig-0.4.4' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for libbigwig-0.4.4 file sizes/checksums [9]: . done packing files [9]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 24 JUL 2019 at 17:04:46 UTC Duration: 00:00:09