=> Building science/libghemical Started : Sunday, 7 JUL 2019 at 22:59:59 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- LD_PRELOAD=/usr/local/lib/gcc8/libgcc_s.so F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/construction/science/libghemical XDG_CONFIG_HOME=/construction/science/libghemical HOME=/construction/science/libghemical TMPDIR="/tmp" PATH=/construction/science/libghemical/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- --enable-mpqc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/libghemical XDG_CONFIG_HOME=/construction/science/libghemical HOME=/construction/science/libghemical TMPDIR="/tmp" PATH=/construction/science/libghemical/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lgfortran -lpthread -lblas -llapack -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/libghemical/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- LIBGHEMICAL_VERSION="3.0.0" OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libghemical" EXAMPLESDIR="share/examples/libghemical" DATADIR="share/libghemical" WWWDIR="www/libghemical" ETCDIR="etc/libghemical" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libghemical DOCSDIR=/usr/local/share/doc/libghemical EXAMPLESDIR=/usr/local/share/examples/libghemical WWWDIR=/usr/local/www/libghemical ETCDIR=/usr/local/etc/libghemical -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> libghemical-3.0.0_15 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> libghemical-3.0.0_15 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libghemical-3.0.0_15 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libghemical-3.0.0_15 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libghemical-3.0.0_15 for building => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libghemical-3.0.0_15 for building ===> Extracting for libghemical-3.0.0_15 => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for libghemical-3.0.0_15 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> libghemical-3.0.0_15 depends on executable: obabel - not found ===> Installing existing package /packages/All/openbabel-2.4.1_4.txz Installing openbabel-2.4.1_4... `-- Installing libxml2-2.9.9... `-- Extracting libxml2-2.9.9: .......... done `-- Installing python36-3.6.8_2... | `-- Installing expat-2.2.6_1... | `-- Extracting expat-2.2.6_1: .......... done | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Installing libffi-3.2.1_3... | `-- Extracting libffi-3.2.1_3: .......... done | `-- Installing libressl-2.9.2... | `-- Extracting libressl-2.9.2: .......... done | `-- Installing ncurses-6.1.20190525... | `-- Extracting ncurses-6.1.20190525: .......... done | `-- Installing readline-8.0.0... | `-- Extracting readline-8.0.0: .......... done `-- Extracting python36-3.6.8_2: .......... done `-- Installing wx30-gtk3-3.0.4_7... | `-- Installing ORBit2-2.14.19_2... | | `-- Installing glib-2.56.3_5,1... | | `-- Installing libiconv-1.14_11... | | `-- Extracting libiconv-1.14_11: .......... done | | `-- Installing pcre-8.43_1... | | `-- Extracting pcre-8.43_1: .......... done | | `-- Extracting glib-2.56.3_5,1: .......... done No schema files found: doing nothing. | | `-- Installing libIDL-0.8.14_4... | | `-- Extracting libIDL-0.8.14_4: ......... done | `-- Extracting ORBit2-2.14.19_2: .......... done | `-- Installing atk-2.28.1... | `-- Extracting atk-2.28.1: .......... done | `-- Installing cairo-1.16.0,2... | | `-- Installing fontconfig-2.12.6,1... | | `-- Installing freetype2-2.10.0... | | `-- Extracting freetype2-2.10.0: .......... done | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing libX11-1.6.7,1... | | `-- Installing libXau-1.0.9... | | `-- Extracting libXau-1.0.9: .......... done | | `-- Installing libXdmcp-1.1.3... | | | `-- Installing xorgproto-2018.4... | | | `-- Extracting xorgproto-2018.4: .......... done | | `-- Extracting libXdmcp-1.1.3: ......... done | | `-- Installing libxcb-1.13.1... | | | `-- Installing libpthread-stubs-0.4... | | | `-- Extracting libpthread-stubs-0.4: .... done | | `-- Extracting libxcb-1.13.1: .......... done | | `-- Extracting libX11-1.6.7,1: .......... done | | `-- Installing libXext-1.3.4,1... | | `-- Extracting libXext-1.3.4,1: .......... done | | `-- Installing libXrender-0.9.10_2... | | `-- Extracting libXrender-0.9.10_2: .......... done | | `-- Installing mesa-libs-18.3.2... | | `-- Installing libXdamage-1.1.5... | | | `-- Installing libXfixes-5.0.3_2... | | | `-- Extracting libXfixes-5.0.3_2: .......... done | | `-- Extracting libXdamage-1.1.5: ......... done | | `-- Installing libXrandr-1.5.2... | | `-- Extracting libXrandr-1.5.2: .......... done | | `-- Installing libXxf86vm-1.1.4_3... | | `-- Extracting libXxf86vm-1.1.4_3: .......... done | | `-- Installing libdrm-2.4.98... | | | `-- Installing libpciaccess-0.13.5... | | | `-- Installing pciids-20190418... | | | `-- Extracting pciids-20190418: ..... done | | | `-- Extracting libpciaccess-0.13.5: ......... done | | `-- Extracting libdrm-2.4.98: .......... done | | `-- Installing libelf-0.8.13_3... | | `-- Extracting libelf-0.8.13_3: .......... done | | `-- Installing libxshmfence-1.3... | | `-- Extracting libxshmfence-1.3: ......... done | | `-- Installing wayland-1.16.0... | | `-- Extracting wayland-1.16.0: .......... done | | `-- Extracting mesa-libs-18.3.2: .......... done | | `-- Installing pixman-0.34.0_1... | | `-- Extracting pixman-0.34.0_1: .......... done | | `-- Installing png-1.6.37... | | `-- Extracting png-1.6.37: .......... done | `-- Extracting cairo-1.16.0,2: .......... done | `-- Installing gconf2-3.2.6_5... | | `-- Installing dbus-glib-0.110... | | `-- Installing dbus-1.12.12... | | | `-- Installing libICE-1.0.9_3,1... | | | `-- Extracting libICE-1.0.9_3,1: .......... done | | | `-- Installing libSM-1.2.3,1... | | | `-- Extracting libSM-1.2.3,1: .......... done ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | `-- Extracting dbus-1.12.12: ......... done | | `-- Extracting dbus-glib-0.110: .......... done | | `-- Installing dconf-0.28.0... | | `-- Extracting dconf-0.28.0: .......... done | | `-- Installing gtk2-2.24.32... | | `-- Installing cups-2.2.11... | | | `-- Installing avahi-app-0.7_2... | | | `-- Installing gdbm-1.18.1_1... | | | `-- Extracting gdbm-1.18.1_1: .......... done | | | `-- Installing gnome_subr-1.0... | | | `-- Extracting gnome_subr-1.0: .... done | | | `-- Installing gobject-introspection-1.56.1,1... | | | `-- Extracting gobject-introspection-1.56.1,1: .......... done | | | `-- Installing libdaemon-0.14_1... | | | `-- Extracting libdaemon-0.14_1: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | | | `-- Extracting avahi-app-0.7_2: .......... done | | | `-- Installing gnutls-3.6.8... | | | `-- Installing ca_root_nss-3.44... | | | `-- Extracting ca_root_nss-3.44: ........ done | | | `-- Installing gmp-6.1.2_1... | | | `-- Extracting gmp-6.1.2_1: .......... done | | | `-- Installing libidn2-2.2.0... | | | | `-- Installing libunistring-0.9.10_1... | | | | `-- Extracting libunistring-0.9.10_1: .......... done | | | `-- Extracting libidn2-2.2.0: .......... done | | | `-- Installing libtasn1-4.13_1... | | | `-- Extracting libtasn1-4.13_1: .......... done | | | `-- Installing nettle-3.4.1_1... | | | `-- Extracting nettle-3.4.1_1: .......... done | | | `-- Installing p11-kit-0.23.15... | | | `-- Extracting p11-kit-0.23.15: .......... done | | | `-- Installing trousers-0.3.14_2... | | | | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting trousers-0.3.14_2: .......... done | | | `-- Extracting gnutls-3.6.8: .......... done | | | `-- Installing libpaper-1.1.24.4... | | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | | `-- Extracting cups-2.2.11: .......... done | | `-- Installing gdk-pixbuf2-2.36.12... | | | `-- Installing jpeg-turbo-2.0.2... | | | `-- Extracting jpeg-turbo-2.0.2: .......... done | | | `-- Installing shared-mime-info-1.10_1... | | | `-- Extracting shared-mime-info-1.10_1: .......... done | | | `-- Installing tiff-4.0.10_1... | | | `-- Installing jbigkit-2.1_1... | | | `-- Extracting jbigkit-2.1_1: .......... done | | | `-- Extracting tiff-4.0.10_1: .......... done | | `-- Extracting gdk-pixbuf2-2.36.12: .......... done | | `-- Installing gtk-update-icon-cache-2.24.32... | | | `-- Installing hicolor-icon-theme-0.17... | | | `-- Extracting hicolor-icon-theme-0.17: . done | | | `-- Installing libXcomposite-0.4.5,1... | | | `-- Extracting libXcomposite-0.4.5,1: .......... done | | | `-- Installing libXcursor-1.2.0... | | | `-- Extracting libXcursor-1.2.0: .......... done | | | `-- Installing libXi-1.7.9_2,1... | | | `-- Extracting libXi-1.7.9_2,1: .......... done | | | `-- Installing libXinerama-1.1.4_2,1... | | | `-- Extracting libXinerama-1.1.4_2,1: .......... done | | | `-- Installing pango-1.42.4_2... | | | `-- Installing encodings-1.0.5,1... | | | | `-- Installing font-util-1.3.1... | | | | `-- Extracting font-util-1.3.1: .......... done | | | `-- Extracting encodings-1.0.5,1: .......... done | | | `-- Installing fribidi-0.19.7... | | | `-- Extracting fribidi-0.19.7: .......... done | | | `-- Installing harfbuzz-2.5.1... | | | | `-- Installing graphite2-1.3.13... | | | | `-- Extracting graphite2-1.3.13: .......... done | | | `-- Extracting harfbuzz-2.5.1: .......... done | | | `-- Installing libXft-2.3.2_3... | | | `-- Extracting libXft-2.3.2_3: .......... done | | | `-- Installing xorg-fonts-truetype-7.7_1... | | | | `-- Installing dejavu-2.37_1... | | | | `-- Installing mkfontscale-1.2.1... | | | | | `-- Installing libfontenc-1.1.4... | | | | | `-- Extracting libfontenc-1.1.4: ......... done | | | | `-- Extracting mkfontscale-1.2.1: ....... done | | | | `-- Extracting dejavu-2.37_1: .......... done | | | | `-- Installing font-bh-ttf-1.0.3_4... | | | | `-- Extracting font-bh-ttf-1.0.3_4: .......... done | | | | `-- Installing font-misc-ethiopic-1.0.3_4... | | | | `-- Extracting font-misc-ethiopic-1.0.3_4: ... done | | | | `-- Installing font-misc-meltho-1.0.3_4... | | | | `-- Extracting font-misc-meltho-1.0.3_4: .......... done | | | `-- Extracting pango-1.42.4_2: .......... done | | `-- Extracting gtk-update-icon-cache-2.24.32: .... done | | `-- Extracting gtk2-2.24.32: .......... done | | `-- Installing polkit-0.114_2... | | `-- Installing spidermonkey52-52.9.0_3... | | | `-- Installing icu-64.2,1... | | | `-- Extracting icu-64.2,1: .......... done | | | `-- Installing nspr-4.21... | | | `-- Extracting nspr-4.21: .......... done | | `-- Extracting spidermonkey52-52.9.0_3: .......... done ===> Creating groups. Creating group 'polkitd' with gid '565'. ===> Creating users Creating user 'polkitd' with uid '565'. | | `-- Extracting polkit-0.114_2: ......... done | `-- Extracting gconf2-3.2.6_5: .......... done | `-- Installing gstreamer1-1.14.4... | `-- Extracting gstreamer1-1.14.4: .......... done | `-- Installing gstreamer1-plugins-1.14.4_1... | | `-- Installing iso-codes-4.2... | | `-- Extracting iso-codes-4.2: .......... done | | `-- Installing orc-0.4.28... | | `-- Extracting orc-0.4.28: .......... done | `-- Extracting gstreamer1-plugins-1.14.4_1: .......... done | `-- Installing gtk3-3.24.7... | | `-- Installing adwaita-icon-theme-3.28.0... | | `-- Extracting adwaita-icon-theme-3.28.0: .......... done | | `-- Installing at-spi2-atk-2.26.2... | | `-- Installing at-spi2-core-2.28.0... | | | `-- Installing libXtst-1.2.3_2... | | | `-- Extracting libXtst-1.2.3_2: .......... done | | | `-- Installing libxkbcommon-0.8.4... | | | `-- Installing xkeyboard-config-2.27... | | | `-- Extracting xkeyboard-config-2.27: .......... done | | | `-- Extracting libxkbcommon-0.8.4: .......... done | | `-- Extracting at-spi2-core-2.28.0: .......... done | | `-- Extracting at-spi2-atk-2.26.2: .......... done | | `-- Installing colord-1.3.5... | | `-- Installing argyllcms-1.9.2_4... | | | `-- Installing libXScrnSaver-1.2.3_2... | | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done | | `-- Extracting argyllcms-1.9.2_4: .......... done | | `-- Installing lcms2-2.9... | | `-- Extracting lcms2-2.9: .......... done | | `-- Installing sqlite3-3.28.0... | | `-- Extracting sqlite3-3.28.0: .......... done ===> Creating groups. Creating group 'colord' with gid '970'. ===> Creating users Creating user 'colord' with uid '970'. | | `-- Extracting colord-1.3.5: .......... done | | `-- Installing libepoxy-1.5.2... | | `-- Extracting libepoxy-1.5.2: .......... done | | `-- Installing librsvg2-2.40.20... | | `-- Installing libcroco-0.6.12... | | `-- Extracting libcroco-0.6.12: .......... done | | `-- Installing libgsf-1.14.44... | | `-- Extracting libgsf-1.14.44: .......... done | | `-- Extracting librsvg2-2.40.20: .......... done | | `-- Installing wayland-protocols-1.17... | | `-- Extracting wayland-protocols-1.17: .......... done | `-- Extracting gtk3-3.24.7: .......... done | `-- Installing libGLU-9.0.0_3... | `-- Extracting libGLU-9.0.0_3: ...... done | `-- Installing libmspack-0.9.1... | `-- Extracting libmspack-0.9.1: ......... done | `-- Installing webkit2-gtk3-2.24.0_1... | | `-- Installing enchant2-2.2.3_3... | | `-- Installing hunspell-1.7.0_1... | | | `-- Installing perl5-5.28.2... | | | `-- Extracting perl5-5.28.2: .......... done | | `-- Extracting hunspell-1.7.0_1: .......... done | | `-- Extracting enchant2-2.2.3_3: .......... done | | `-- Installing geoclue-2.4.7... | | `-- Installing json-glib-1.4.2... | | `-- Extracting json-glib-1.4.2: .......... done | | `-- Installing libsoup-2.62.3... | | | `-- Installing glib-networking-2.56.1_1... | | | `-- Installing gsettings-desktop-schemas-3.28.1... | | | `-- Extracting gsettings-desktop-schemas-3.28.1: .......... done | | | `-- Installing libproxy-0.4.15... | | | `-- Extracting libproxy-0.4.15: .......... done | | | `-- Extracting glib-networking-2.56.1_1: .......... done | | | `-- Installing libgcrypt-1.8.4_1... | | | `-- Installing libgpg-error-1.36... | | | `-- Extracting libgpg-error-1.36: .......... done | | | `-- Extracting libgcrypt-1.8.4_1: .......... done | | `-- Extracting libsoup-2.62.3: .......... done | | `-- Extracting geoclue-2.4.7: .......... done | | `-- Installing gstreamer1-plugins-bad-1.14.4... | | `-- Extracting gstreamer1-plugins-bad-1.14.4: .......... done | | `-- Installing gstreamer1-plugins-gl-1.14.4_2... | | `-- Installing graphene-1.8.2_1... | | | `-- Installing py36-gobject3-3.28.3... | | | `-- Installing py36-cairo-1.14.1... | | | | `-- Installing py36-setuptools-41.0.0... | | | | `-- Extracting py36-setuptools-41.0.0: .......... done | | | `-- Extracting py36-cairo-1.14.1: .......... done | | | `-- Installing pygobject3-common-3.28.3... | | | `-- Extracting pygobject3-common-3.28.3: ..... done | | | `-- Extracting py36-gobject3-3.28.3: .......... done | | `-- Extracting graphene-1.8.2_1: .......... done | | `-- Extracting gstreamer1-plugins-gl-1.14.4_2: .......... done | | `-- Installing harfbuzz-icu-2.5.1... | | `-- Extracting harfbuzz-icu-2.5.1: ..... done | | `-- Installing hyphen-2.8.8... | | `-- Extracting hyphen-2.8.8: .......... done | | `-- Installing libXt-1.1.5_2,1... | | `-- Extracting libXt-1.1.5_2,1: .......... done | | `-- Installing libnotify-0.7.7_1... | | `-- Extracting libnotify-0.7.7_1: .......... done | | `-- Installing libsecret-0.18.6_1... | | `-- Extracting libsecret-0.18.6_1: .......... done | | `-- Installing libxslt-1.1.32_1... | | `-- Extracting libxslt-1.1.32_1: .......... done | | `-- Installing openjpeg-2.3.1... | | `-- Extracting openjpeg-2.3.1: .......... done | | `-- Installing webp-1.0.2... | | `-- Installing giflib-5.1.9... | | `-- Extracting giflib-5.1.9: .......... done | | `-- Extracting webp-1.0.2: .......... done | | `-- Installing woff2-1.0.2_3... | | `-- Installing brotli-1.0.7_1,1... | | `-- Extracting brotli-1.0.7_1,1: .......... done | | `-- Extracting woff2-1.0.2_3: .......... done | `-- Extracting webkit2-gtk3-2.24.0_1: .......... done `-- Extracting wx30-gtk3-3.0.4_7: .......... done Extracting openbabel-2.4.1_4: .......... done Message from python36-3.6.8_2: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from freetype2-2.10.0: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Message from ca_root_nss-3.44: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from dejavu-2.37_1: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from perl5-5.28.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from wx30-gtk3-3.0.4_7: ===> NOTICE: The wx30-gtk3 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> libghemical-3.0.0_15 depends on executable: obabel - found ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on executable: intltool-update - not found ===> Installing existing package /packages/All/intltool-0.51.0_1.txz Installing intltool-0.51.0_1... `-- Installing p5-XML-Parser-2.44... `-- Extracting p5-XML-Parser-2.44: .......... done Extracting intltool-0.51.0_1: .......... done ===> libghemical-3.0.0_15 depends on executable: intltool-update - found ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on executable: ld - found ===> libghemical-3.0.0_15 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_2.txz Installing gcc8-8.3.0_2... `-- Installing binutils-2.32_1,1... `-- Extracting binutils-2.32_1,1: .......... done `-- Installing mpc-1.1.0_2... | `-- Installing mpfr-4.0.2... | `-- Extracting mpfr-4.0.2: .......... done `-- Extracting mpc-1.1.0_2: ......... done Extracting gcc8-8.3.0_2: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> libghemical-3.0.0_15 depends on executable: gfortran8 - found ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on executable: msgfmt - not found ===> Installing existing package /packages/All/gettext-tools-0.20.1.txz Installing gettext-tools-0.20.1... `-- Installing libtextstyle-0.20.1... `-- Extracting libtextstyle-0.20.1: .......... done Extracting gettext-tools-0.20.1: .......... done ===> libghemical-3.0.0_15 depends on executable: msgfmt - found ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... Extracting gmake-4.2.1_3: .......... done ===> libghemical-3.0.0_15 depends on executable: gmake - found ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.6.1,1.txz Installing pkgconf-1.6.1,1... Extracting pkgconf-1.6.1,1: .......... done ===> libghemical-3.0.0_15 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on file: /usr/local/bin/as - found ===> libghemical-3.0.0_15 depends on package: xorgproto>=0 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> libghemical-3.0.0_15 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.5.0_5.txz Installing blas-3.5.0_5... Extracting blas-3.5.0_5: ....... done ===> libghemical-3.0.0_15 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on shared library: libint.so - not found ===> Installing existing package /packages/All/libint-1.2.1.15.txz Installing libint-1.2.1.15... Extracting libint-1.2.1.15: .......... done ===> libghemical-3.0.0_15 depends on shared library: libint.so - found (/usr/local/lib/libint.so) ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on shared library: libf2c.so - not found ===> Installing existing package /packages/All/f2c-20060810_6.txz Installing f2c-20060810_6... Extracting f2c-20060810_6: .......... done ===> libghemical-3.0.0_15 depends on shared library: libf2c.so - found (/usr/local/lib/libf2c.so) ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.5.0_7.txz Installing lapack-3.5.0_7... Extracting lapack-3.5.0_7: .......... done ===> libghemical-3.0.0_15 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on shared library: libmpqc.so - not found ===> Installing existing package /packages/All/mpqc-2.3.1_43.txz Installing mpqc-2.3.1_43... `-- Installing graphviz-2.40.1_10... | `-- Installing libXaw-1.0.13_2,2... | | `-- Installing libXmu-1.1.3,1... | | `-- Extracting libXmu-1.1.3,1: .......... done | | `-- Installing libXp-1.0.3_2,1... | | `-- Extracting libXp-1.0.3_2,1: .......... done | | `-- Installing libXpm-3.5.12_2... | | `-- Extracting libXpm-3.5.12_2: .......... done | `-- Extracting libXaw-1.0.13_2,2: .......... done | `-- Installing libgd-2.2.5_1,1... | `-- Extracting libgd-2.2.5_1,1: .......... done | `-- Installing libltdl-2.4.6... | `-- Extracting libltdl-2.4.6: .......... done `-- Extracting graphviz-2.40.1_10: .......... done `-- Installing mpich-3.2.1_4... | `-- Installing hwloc-1.11.11... | `-- Extracting hwloc-1.11.11: .......... done `-- Extracting mpich-3.2.1_4: .......... done `-- Installing tk-wrapper-1.1_3... | `-- Installing tk86-8.6.9_1... | | `-- Installing tcl86-8.6.9_1... | | `-- Extracting tcl86-8.6.9_1: .......... done | `-- Extracting tk86-8.6.9_1: .......... done `-- Extracting tk-wrapper-1.1_3: ..... done Extracting mpqc-2.3.1_43: .......... done Message from mpich-3.2.1_4: ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from tk-wrapper-1.1_3: ******************************************************************* You may wish to modify (or create) the configuration file: /usr/local/etc/wish.conf Sample configuration file is located at: /usr/local/etc/wish.conf.sample ******************************************************************* ===> libghemical-3.0.0_15 depends on shared library: libmpqc.so - found (/usr/local/lib/libmpqc.so) ===> Returning to build of libghemical-3.0.0_15 ===> libghemical-3.0.0_15 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> libghemical-3.0.0_15 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for libghemical-3.0.0_15 configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking build system type... x86_64-portbld-dragonfly5.4 checking host system type... x86_64-portbld-dragonfly5.4 checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by gmake... GNU checking dependency style of cc... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C preprocessor... cpp checking how to run the C++ preprocessor... c++ -E checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for ar... /usr/local/bin/ar checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... failed checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking dependency style of c++... (cached) gcc3 checking how to run the C++ preprocessor... c++ -E checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly5.4 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly5.4 ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/local/bin/ar checking for sh... /bin/sh checking whether gmake sets $(MAKE)... (cached) yes checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.51.0 found checking for intltool-update... /usr/local/bin/intltool-update checking for intltool-merge... /usr/local/bin/intltool-merge checking for intltool-extract... /usr/local/bin/intltool-extract checking for xgettext... /usr/local/bin/xgettext checking for msgmerge... /usr/local/bin/msgmerge checking for msgfmt... /usr/local/bin/msgfmt checking for gmsgfmt... /usr/local/bin/msgfmt checking for perl... /usr/local/bin/perl checking for perl >= 5.8.1... 5.28.2 checking for XML::Parser... ok checking for locale.h... (cached) yes checking for LC_MESSAGES... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking for ngettext in libc... no checking for bindtextdomain in -lintl... yes checking for ngettext in -lintl... yes checking for dgettext in -lintl... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/local/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/local/bin/msgfmt checking for xgettext... (cached) /usr/local/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lblas... yes checking for main in -llapack... yes checking for sc-config... /usr/local/bin/sc-config checking SC - version... yes checking GL/gl.h usability... yes checking GL/gl.h presence... yes checking for GL/gl.h... yes checking for cc option to accept ISO C99... none needed checking for cc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking for an ANSI C-conforming const... yes checking for ANSI C header files... (cached) yes configure: build options: ^^^^^^^^^^^^^^ enable MPQC : yes enable MOPAC7 : no configure: creating ./config.status config.status: creating libghemical.pc config.status: creating Makefile config.status: creating bin/Makefile config.status: creating bin/amber/Makefile config.status: creating bin/builder/Makefile config.status: creating bin/param_mm/Makefile config.status: creating bin/param_mm/default/Makefile config.status: creating bin/param_mm/prmfit/Makefile config.status: creating bin/param_mm/tripos52/Makefile config.status: creating bin/param_sf/Makefile config.status: creating bin/param_sf/default/Makefile config.status: creating po/Makefile.in config.status: creating src/Makefile config.status: creating src/libghemicalconfig.h config.status: creating src/libghemical-features.h config.status: executing src/libghemicalconfig2.h commands config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing stamp.h commands config.status: executing po/stamp-it commands -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for libghemical-3.0.0_15 gmake[1]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' Making all in src gmake[2]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/src' gmake all-am gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c -o atom.lo atom.cpp 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-DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT model.lo -MD -MP -MF .deps/model.Tpo -c -o model.lo model.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT engine.lo -MD -MP -MF .deps/engine.Tpo -c -o engine.lo engine.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT constraint.lo -MD -MP -MF .deps/constraint.Tpo -c constraint.cpp -fPIC -DPIC -o .libs/constraint.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c atom.cpp -fPIC -DPIC -o .libs/atom.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.cpp -fPIC -DPIC -o .libs/model.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT engine.lo -MD -MP -MF .deps/engine.Tpo -c engine.cpp -fPIC -DPIC -o .libs/engine.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT bond.lo -MD -MP -MF .deps/bond.Tpo -c bond.cpp -fPIC -DPIC -o .libs/bond.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT bond.lo -MD -MP -MF .deps/bond.Tpo -c bond.cpp -o bond.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT constraint.lo -MD -MP -MF .deps/constraint.Tpo -c constraint.cpp -o constraint.o >/dev/null 2>&1 atom.cpp:33:47: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] element element::current_element = element("C"); ^ In file included from model.cpp:31: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c atom.cpp -o atom.o >/dev/null 2>&1 mv -f .deps/bond.Tpo .deps/bond.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT typerule.lo -MD -MP -MF .deps/typerule.Tpo -c -o typerule.lo typerule.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT typerule.lo -MD -MP -MF .deps/typerule.Tpo -c typerule.cpp -fPIC -DPIC -o .libs/typerule.o mv -f .deps/constraint.Tpo .deps/constraint.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT utility.lo -MD -MP -MF .deps/utility.Tpo -c -o utility.lo utility.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT utility.lo -MD -MP -MF .deps/utility.Tpo -c utility.cpp -fPIC -DPIC -o .libs/utility.o In file included from model.cpp:35: eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ mv -f .deps/atom.Tpo .deps/atom.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT chn_info.lo -MD -MP -MF .deps/chn_info.Tpo -c -o chn_info.lo chn_info.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT chn_info.lo -MD -MP -MF .deps/chn_info.Tpo -c chn_info.cpp -fPIC -DPIC -o .libs/chn_info.o model.cpp: In member function 'bool model::GetCRDSetVisible(i32u)': model.cpp:319:23: warning: control reaches end of non-void function [-Wreturn-type] else assertion_failed(__FILE__, __LINE__, "index overflow"); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT utility.lo -MD -MP -MF .deps/utility.Tpo -c utility.cpp -o utility.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT chn_info.lo -MD -MP -MF .deps/chn_info.Tpo -c chn_info.cpp -o chn_info.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT engine.lo -MD -MP -MF .deps/engine.Tpo -c engine.cpp -o engine.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT typerule.lo -MD -MP -MF .deps/typerule.Tpo -c typerule.cpp -o typerule.o >/dev/null 2>&1 mv -f .deps/chn_info.Tpo .deps/chn_info.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT seqbuild.lo -MD -MP -MF .deps/seqbuild.Tpo -c -o seqbuild.lo seqbuild.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT seqbuild.lo -MD -MP -MF .deps/seqbuild.Tpo -c seqbuild.cpp -fPIC -DPIC -o .libs/seqbuild.o mv -f .deps/utility.Tpo .deps/utility.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT mfinder.lo -MD -MP -MF .deps/mfinder.Tpo -c -o mfinder.lo mfinder.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT mfinder.lo -MD -MP -MF .deps/mfinder.Tpo -c mfinder.cpp -fPIC -DPIC -o .libs/mfinder.o mv -f .deps/typerule.Tpo .deps/typerule.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm.lo -MD -MP -MF .deps/eng1_qm.Tpo -c -o eng1_qm.lo eng1_qm.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm.lo -MD -MP -MF .deps/eng1_qm.Tpo -c eng1_qm.cpp -fPIC -DPIC -o .libs/eng1_qm.o In file included from eng1_qm.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm.lo -MD -MP -MF .deps/eng1_qm.Tpo -c eng1_qm.cpp -o eng1_qm.o >/dev/null 2>&1 mv -f .deps/engine.Tpo .deps/engine.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mpqc.lo -MD -MP -MF .deps/eng1_qm_mpqc.Tpo -c -o eng1_qm_mpqc.lo eng1_qm_mpqc.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mpqc.lo -MD -MP -MF .deps/eng1_qm_mpqc.Tpo -c eng1_qm_mpqc.cpp -fPIC -DPIC -o .libs/eng1_qm_mpqc.o In file included from eng1_qm_mpqc.h:32, from eng1_qm_mpqc.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ mv -f .deps/eng1_qm.Tpo .deps/eng1_qm.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mopac.lo -MD -MP 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-I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf_cg.lo -MD -MP -MF .deps/eng1_sf_cg.Tpo -c eng1_sf_cg.cpp -fPIC -DPIC -o .libs/eng1_sf_cg.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf_cg.lo -MD -MP -MF .deps/eng1_sf_cg.Tpo -c eng1_sf_cg.cpp -o eng1_sf_cg.o >/dev/null 2>&1 mv -f .deps/eng1_sf_cg.Tpo .deps/eng1_sf_cg.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng2_qm_mm.lo -MD -MP -MF .deps/eng2_qm_mm.Tpo -c -o eng2_qm_mm.lo eng2_qm_mm.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng2_qm_mm.lo -MD -MP -MF .deps/eng2_qm_mm.Tpo -c eng2_qm_mm.cpp -fPIC -DPIC -o .libs/eng2_qm_mm.o In file included from eng2_qm_mm.h:28, from eng2_qm_mm.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ In file included from eng2_qm_mm.cpp:22: eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ mv -f .deps/eng1_mm_default.Tpo .deps/eng1_mm_default.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT notice.lo -MD -MP -MF .deps/notice.Tpo -c -o notice.lo notice.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT notice.lo -MD -MP -MF .deps/notice.Tpo -c notice.cpp -fPIC -DPIC -o .libs/notice.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng2_qm_mm.lo -MD -MP -MF .deps/eng2_qm_mm.Tpo -c eng2_qm_mm.cpp -o eng2_qm_mm.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT notice.lo -MD -MP -MF .deps/notice.Tpo -c notice.cpp -o notice.o >/dev/null 2>&1 mv -f .deps/notice.Tpo .deps/notice.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT conjgrad.lo -MD -MP -MF .deps/conjgrad.Tpo -c -o conjgrad.lo conjgrad.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT conjgrad.lo -MD -MP -MF .deps/conjgrad.Tpo -c conjgrad.cpp -fPIC -DPIC -o .libs/conjgrad.o mv -f .deps/eng1_mm_prmfit.Tpo .deps/eng1_mm_prmfit.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT intcrd.lo -MD -MP -MF .deps/intcrd.Tpo -c -o intcrd.lo intcrd.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT intcrd.lo -MD -MP -MF .deps/intcrd.Tpo -c intcrd.cpp -fPIC -DPIC -o .libs/intcrd.o mv -f .deps/eng2_qm_mm.Tpo .deps/eng2_qm_mm.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT search.lo -MD -MP -MF .deps/search.Tpo -c -o search.lo search.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT search.lo -MD -MP -MF .deps/search.Tpo -c search.cpp -fPIC -DPIC -o .libs/search.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT conjgrad.lo -MD -MP -MF .deps/conjgrad.Tpo -c conjgrad.cpp -o conjgrad.o >/dev/null 2>&1 In file included from search.h:35, from search.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT intcrd.lo -MD -MP -MF .deps/intcrd.Tpo -c intcrd.cpp -o intcrd.o >/dev/null 2>&1 mv -f .deps/conjgrad.Tpo .deps/conjgrad.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT geomopt.lo -MD -MP -MF .deps/geomopt.Tpo -c -o geomopt.lo geomopt.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT geomopt.lo -MD -MP -MF .deps/geomopt.Tpo -c geomopt.cpp -fPIC -DPIC -o .libs/geomopt.o In file included from geomopt.h:31, from geomopt.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT search.lo -MD -MP -MF .deps/search.Tpo -c search.cpp -o search.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT geomopt.lo -MD -MP -MF .deps/geomopt.Tpo -c geomopt.cpp -o geomopt.o >/dev/null 2>&1 mv -f .deps/geomopt.Tpo .deps/geomopt.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT moldyn.lo -MD -MP -MF .deps/moldyn.Tpo -c -o moldyn.lo moldyn.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT moldyn.lo -MD -MP -MF .deps/moldyn.Tpo -c moldyn.cpp -fPIC -DPIC -o .libs/moldyn.o mv -f .deps/intcrd.Tpo .deps/intcrd.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT pop_ana.lo -MD -MP -MF .deps/pop_ana.Tpo -c -o pop_ana.lo pop_ana.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT pop_ana.lo -MD -MP -MF .deps/pop_ana.Tpo -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o In file included from pop_ana.h:31, from pop_ana.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT moldyn.lo -MD -MP -MF .deps/moldyn.Tpo -c moldyn.cpp -o moldyn.o >/dev/null 2>&1 mv -f .deps/search.Tpo .deps/search.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c -o sasaeval.lo sasaeval.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o mv -f .deps/tab_mm_default.Tpo .deps/tab_mm_default.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c -o resonance.lo resonance.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT pop_ana.lo -MD -MP -MF .deps/pop_ana.Tpo -c pop_ana.cpp -o pop_ana.o >/dev/null 2>&1 mv -f .deps/moldyn.Tpo .deps/moldyn.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c resonance.cpp -o resonance.o >/dev/null 2>&1 mv -f .deps/pop_ana.Tpo .deps/pop_ana.Plo mv -f .deps/resonance.Tpo .deps/resonance.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c sasaeval.cpp -o sasaeval.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf.lo -MD -MP -MF .deps/eng1_sf.Tpo -c eng1_sf.cpp -o eng1_sf.o >/dev/null 2>&1 mv -f .deps/sasaeval.Tpo .deps/sasaeval.Plo mv -f .deps/eng1_sf.Tpo .deps/eng1_sf.Plo /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -version-info 5:1:0 -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lgfortran -lpthread -lblas -llapack -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o libghemical.la -rpath /usr/local/lib atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/local/lib -L/usr/local/lib -lderiv -lr12 -lint -lfl -lm -ldl -L/usr/local/lib -lpthread -lblas -L/usr/local/lib/gcc8 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.4/8.3.0 -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.4/8.3.0/../../../../../x86_64-portbld-dragonfly5.4/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.4/8.3.0/../../.. -lmpich -lgfortran -lm -lgcc_s -lquadmath -llapack -lblas -L/usr/local/lib/gcc8 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.4/8.3.0 -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.4/8.3.0/../../../../../x86_64-portbld-dragonfly5.4/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.4/8.3.0/../../.. -lmpich -lgfortran -lm -lgcc_s -lquadmath libtool: link: c++ -shared -nostdlib /usr/lib/crti.o /usr/lib/gcc80/crtbeginS.o .libs/atom.o .libs/bond.o .libs/constraint.o .libs/model.o .libs/engine.o .libs/typerule.o .libs/utility.o .libs/chn_info.o .libs/seqbuild.o .libs/mfinder.o .libs/eng1_qm.o .libs/eng1_qm_mpqc.o .libs/eng1_qm_mopac.o .libs/eng1_mm.o .libs/eng1_mm_tripos52.o .libs/tab_mm_tripos52.o .libs/eng1_mm_default.o .libs/tab_mm_default.o .libs/eng1_mm_prmfit.o .libs/tab_mm_prmfit.o .libs/eng1_sf.o .libs/eng1_sf_ua.o .libs/eng1_sf_cg.o .libs/eng2_qm_mm.o .libs/notice.o .libs/conjgrad.o .libs/intcrd.o .libs/search.o .libs/geomopt.o .libs/moldyn.o .libs/pop_ana.o .libs/sasaeval.o .libs/resonance.o -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -L/usr/local/lib/gcc8 -L/usr/local/lib -lderiv -lr12 -lint -lfl -ldl -lpthread -L/usr/local/bin -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.4/8.3.0 -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.4/8.3.0/../../../../../x86_64-portbld-dragonfly5.4/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.4/8.3.0/../../.. -llapack -lblas -lmpich -lgfortran -lgcc_s -lquadmath -L/usr/lib/gcc80 -lstdc++ -lm -lc -lgcc -lgcc_pic /usr/lib/gcc80/crtendS.o /usr/lib/crtn.o -Wl,-rpath=/usr/local/lib/gcc8 -B/usr/local/bin -Wl,-soname -Wl,libghemical.so.5 -o .libs/libghemical.so.5.0.1 libtool: link: (cd ".libs" && rm -f "libghemical.so.5" && ln -s "libghemical.so.5.0.1" "libghemical.so.5") libtool: link: (cd ".libs" && rm -f "libghemical.so" && ln -s "libghemical.so.5.0.1" "libghemical.so") libtool: link: /usr/local/bin/ar cru .libs/libghemical.a atom.o bond.o constraint.o model.o engine.o typerule.o utility.o chn_info.o seqbuild.o mfinder.o eng1_qm.o eng1_qm_mpqc.o eng1_qm_mopac.o eng1_mm.o eng1_mm_tripos52.o tab_mm_tripos52.o eng1_mm_default.o tab_mm_default.o eng1_mm_prmfit.o tab_mm_prmfit.o eng1_sf.o eng1_sf_ua.o eng1_sf_cg.o eng2_qm_mm.o notice.o conjgrad.o intcrd.o search.o geomopt.o moldyn.o pop_ana.o sasaeval.o resonance.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: /usr/local/bin/ranlib .libs/libghemical.a libtool: link: ( cd ".libs" && rm -f "libghemical.la" && ln -s "../libghemical.la" "libghemical.la" ) gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/src' gmake[2]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/src' Making all in bin gmake[2]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' Making all in amber gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' Making all in builder gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' Making all in param_mm gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' Making all in default gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' Making all in prmfit gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' Making all in tripos52 gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[4]: Nothing to be done for 'all-am'. gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' Making all in param_sf gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' Making all in default gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[4]: Nothing to be done for 'all-am'. gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[2]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' Making all in po gmake[2]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/po' file=`echo de | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file de.po file=`echo fi | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file fi.po file=`echo mk | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file mk.po file=`echo pt_BR | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file pt_BR.po file=`echo ru | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file ru.po file=`echo sq | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file sq.po gmake[2]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/po' gmake[2]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' gmake[2]: Nothing to be done for 'all-am'. gmake[2]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' gmake[1]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> libghemical-3.0.0_15 depends on executable: gfortran8 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for libghemical-3.0.0_15 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' gmake INSTALL_PROGRAM="/bin/sh /construction/science/libghemical/libghemical-3.0.0/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /construction/science/libghemical/libghemical-3.0.0/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ `test -z 'strip' || \ echo "INSTALL_PROGRAM_ENV=STRIPPROG='strip'"` install gmake[2]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' Making install in src gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/src' gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/src' test -z "/usr/local/lib" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c -s libghemical.la '/construction/science/libghemical/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libghemical.so.5.0.1 /construction/science/libghemical/stage/usr/local/lib/libghemical.so.5.0.1 libtool: install: strip --strip-unneeded /construction/science/libghemical/stage/usr/local/lib/libghemical.so.5.0.1 libtool: install: (cd /construction/science/libghemical/stage/usr/local/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so.5 || { rm -f libghemical.so.5 && ln -s libghemical.so.5.0.1 libghemical.so.5; }; }) libtool: install: (cd /construction/science/libghemical/stage/usr/local/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so || { rm -f libghemical.so && ln -s libghemical.so.5.0.1 libghemical.so; }; }) libtool: install: /usr/bin/install -c .libs/libghemical.lai /construction/science/libghemical/stage/usr/local/lib/libghemical.la libtool: install: /usr/bin/install -c .libs/libghemical.a /construction/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: strip --strip-debug /construction/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: chmod 644 /construction/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: /usr/local/bin/ranlib /construction/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: warning: remember to run `libtool --finish /usr/local/lib' test -z "/usr/local/include/ghemical" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/include/ghemical" install -m 0644 libghemicaldefine.h libghemical-features.h local_i18n.h typedef.h v3d.h atom.h bond.h constraint.h model.h engine.h typerule.h utility.h chn_info.h seqbuild.h mfinder.h eng1_qm.h eng1_qm_mpqc.h eng1_qm_mopac.h eng1_mm.h eng1_mm_tripos52.h tab_mm_tripos52.h eng1_mm_default.h tab_mm_default.h eng1_mm_prmfit.h tab_mm_prmfit.h eng1_sf.h eng1_sf_ua.h eng1_sf_cg.h eng2_qm_mm.h notice.h conjgrad.h intcrd.h search.h geomopt.h moldyn.h pop_ana.h sasaeval.h resonance.h '/construction/science/libghemical/stage/usr/local/include/ghemical' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/src' gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/src' Making install in bin gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' Making install in amber gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' gmake[5]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/amber" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/amber" install -m 0644 all_amino94_MOD.in all_aminoct94.in all_aminont94.in all_nuc94_MOD.in parm99_frcmod_ff99SB.dat '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/amber' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' Making install in builder gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' gmake[5]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/builder" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/builder" install -m 0644 amino.txt nucleic.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/builder' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' Making install in param_mm gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' Making install in default gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/default" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/default" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/default' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' Making install in prmfit gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/prmfit" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/prmfit" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/prmfit' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' Making install in tripos52 gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/tripos52" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/tripos52" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt parameters5.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/tripos52' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' Making install in param_sf gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' Making install in default gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_sf/default" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_sf/default" install -m 0644 loopdip.txt looptor.txt nonbonded.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_sf/default' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' Making install in po gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/po' linguas="de fi mk pt_BR ru sq "; \ for lang in $linguas; do \ dir=/construction/science/libghemical/stage/usr/local/share/locale/$lang/LC_MESSAGES; \ /bin/sh /construction/science/libghemical/libghemical-3.0.0/install-sh -d $dir; \ if test -r $lang.gmo; then \ install -m 0644 $lang.gmo $dir/libghemical.mo; \ echo "installing $lang.gmo as $dir/libghemical.mo"; \ else \ install -m 0644 ./$lang.gmo $dir/libghemical.mo; \ echo "installing ./$lang.gmo as" \ "$dir/libghemical.mo"; \ fi; \ if test -r $lang.gmo.m; then \ install -m 0644 $lang.gmo.m $dir/libghemical.mo.m; \ echo "installing $lang.gmo.m as $dir/libghemical.mo.m"; \ else \ if test -r ./$lang.gmo.m ; then \ install -m 0644 ./$lang.gmo.m \ $dir/libghemical.mo.m; \ echo "installing ./$lang.gmo.m as" \ "$dir/libghemical.mo.m"; \ else \ true; \ fi; \ fi; \ done installing de.gmo as /construction/science/libghemical/stage/usr/local/share/locale/de/LC_MESSAGES/libghemical.mo installing fi.gmo as /construction/science/libghemical/stage/usr/local/share/locale/fi/LC_MESSAGES/libghemical.mo installing mk.gmo as /construction/science/libghemical/stage/usr/local/share/locale/mk/LC_MESSAGES/libghemical.mo installing pt_BR.gmo as /construction/science/libghemical/stage/usr/local/share/locale/pt_BR/LC_MESSAGES/libghemical.mo installing ru.gmo as /construction/science/libghemical/stage/usr/local/share/locale/ru/LC_MESSAGES/libghemical.mo installing sq.gmo as /construction/science/libghemical/stage/usr/local/share/locale/sq/LC_MESSAGES/libghemical.mo gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/po' gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' gmake[4]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/libdata/pkgconfig" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/libdata/pkgconfig" install -m 0644 libghemical.pc '/construction/science/libghemical/stage/usr/local/libdata/pkgconfig' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' gmake[2]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' gmake[1]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for libghemical-3.0.0_15 file sizes/checksums [78]: . done packing files [78]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 7 JUL 2019 at 23:01:56 UTC Duration: 00:01:57