=> Building science/lammps Started : Tuesday, 9 JUL 2019 at 19:16:07 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for lammps-2019.06.5: FFMPEG=on: FFmpeg support (WMA, AIFF, AC3, APE...) GZIP=on JPEG=on: JPEG image format support LATTE=on: Use LATTE package PNG=on: PNG image format support VORONOI=on: Use voro++, Voronoi tessellation package ====> Enable parallelizations: MPI=off: MPI (Message Passing Interface) support OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/lammps XDG_CONFIG_HOME=/construction/science/lammps HOME=/construction/science/lammps TMPDIR="/tmp" PATH=/construction/science/lammps/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/lammps XDG_CONFIG_HOME=/construction/science/lammps HOME=/construction/science/lammps TMPDIR="/tmp" PATH=/construction/science/lammps/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/lammps/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- CMAKE_BUILD_TYPE="release" OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/lammps" EXAMPLESDIR="share/examples/lammps" DATADIR="share/lammps" WWWDIR="www/lammps" ETCDIR="etc/lammps" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/lammps DOCSDIR=/usr/local/share/doc/lammps EXAMPLESDIR=/usr/local/share/examples/lammps WWWDIR=/usr/local/www/lammps ETCDIR=/usr/local/etc/lammps -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> lammps-2019.06.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> lammps-2019.06.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of lammps-2019.06.5 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by lammps-2019.06.5 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by lammps-2019.06.5 for building => SHA256 Checksum OK for lammps-lammps-2019.06.5-patch_5Jun2019_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by lammps-2019.06.5 for building ===> Extracting for lammps-2019.06.5 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by lammps-2019.06.5 for building => SHA256 Checksum OK for lammps-lammps-2019.06.5-patch_5Jun2019_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for lammps-2019.06.5 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> lammps-2019.06.5 depends on executable: ffmpeg - not found ===> Installing existing package /packages/All/ffmpeg-4.1.3_12,1.txz Installing ffmpeg-4.1.3_12,1... `-- Installing dav1d-0.3.1... `-- Extracting dav1d-0.3.1: .......... done `-- Installing fontconfig-2.12.6,1... | `-- Installing expat-2.2.6_1... | `-- Extracting expat-2.2.6_1: .......... done | `-- Installing freetype2-2.10.0... | `-- Extracting freetype2-2.10.0: .......... done `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded `-- Installing gmp-6.1.2_1... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gmp-6.1.2_1: .......... done `-- Installing gnutls-3.6.8... | `-- Installing ca_root_nss-3.44... | `-- Extracting ca_root_nss-3.44: ........ done | `-- Installing gettext-runtime-0.20.1... | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Installing libidn2-2.2.0... | | `-- Installing libunistring-0.9.10_1... | | `-- Extracting libunistring-0.9.10_1: .......... done | `-- Extracting libidn2-2.2.0: .......... done | `-- Installing libtasn1-4.13_1... | `-- Extracting libtasn1-4.13_1: .......... done | `-- Installing nettle-3.4.1_1... | `-- Extracting nettle-3.4.1_1: .......... done | `-- Installing p11-kit-0.23.15... | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | `-- Extracting p11-kit-0.23.15: .......... done | `-- Installing trousers-0.3.14_2... | | `-- Installing libressl-2.9.2... | | `-- Extracting libressl-2.9.2: .......... done | | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | `-- Extracting trousers-0.3.14_2: .......... done `-- Extracting gnutls-3.6.8: .......... done `-- Installing libX11-1.6.7,1... | `-- Installing libXau-1.0.9... | `-- Extracting libXau-1.0.9: .......... done | `-- Installing libXdmcp-1.1.3... | | `-- Installing xorgproto-2018.4... | | `-- Extracting xorgproto-2018.4: .......... done | `-- Extracting libXdmcp-1.1.3: ......... done | `-- Installing libxcb-1.13.1... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: .... done | | `-- Installing libxml2-2.9.9... | | `-- Extracting libxml2-2.9.9: .......... done | `-- Extracting libxcb-1.13.1: .......... done `-- Extracting libX11-1.6.7,1: .......... done `-- Installing libtheora-1.1.1_7... | `-- Installing libogg-1.3.3,4... | `-- Extracting libogg-1.3.3,4: .......... done | `-- Installing libvorbis-1.3.6,3... | `-- Extracting libvorbis-1.3.6,3: .......... done `-- Extracting libtheora-1.1.1_7: .......... done `-- Installing libv4l-1.6.3_4... | `-- Installing jpeg-turbo-2.0.2... | `-- Extracting jpeg-turbo-2.0.2: .......... done `-- Extracting libv4l-1.6.3_4: .......... done `-- Installing libva-2.4.1_1... | `-- Installing libXext-1.3.4,1... | `-- Extracting libXext-1.3.4,1: .......... done | `-- Installing libXfixes-5.0.3_2... | `-- Extracting libXfixes-5.0.3_2: .......... done | `-- Installing libdrm-2.4.98... | | `-- Installing libpciaccess-0.13.5... | | `-- Installing pciids-20190418... | | `-- Extracting pciids-20190418: ..... done | | `-- Extracting libpciaccess-0.13.5: ......... done | `-- Extracting libdrm-2.4.98: .......... done | `-- Installing wayland-1.16.0... | `-- Extracting wayland-1.16.0: .......... done `-- Extracting libva-2.4.1_1: .......... done `-- Installing libvdpau-1.1.1_2... `-- Extracting libvdpau-1.1.1_2: .......... done `-- Installing libvpx-1.8.0... `-- Extracting libvpx-1.8.0: .......... done `-- Installing libx264-0.157.2945... `-- Extracting libx264-0.157.2945: ......... done `-- Installing opencv-core-3.4.1_18... `-- Extracting opencv-core-3.4.1_18: .......... done `-- Installing opus-1.3.1... `-- Extracting opus-1.3.1: .......... done `-- Installing x265-3.0_1... `-- Extracting x265-3.0_1: .......... done `-- Installing xvid-1.3.5,1... `-- Extracting xvid-1.3.5,1: ........ done Extracting ffmpeg-4.1.3_12,1: .......... done Message from freetype2-2.10.0: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Message from ca_root_nss-3.44: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from opencv-core-3.4.1_18: ===> NOTICE: The opencv-core port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> lammps-2019.06.5 depends on executable: ffmpeg - found ===> Returning to build of lammps-2019.06.5 ===> lammps-2019.06.5 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.14.5.txz Installing cmake-3.14.5... `-- Installing curl-7.65.1... | `-- Installing libnghttp2-1.39.1... | `-- Extracting libnghttp2-1.39.1: .......... done `-- Extracting curl-7.65.1: .......... done `-- Installing jsoncpp-1.8.1_6... `-- Extracting jsoncpp-1.8.1_6: .......... done `-- Installing libarchive-3.3.3,1... | `-- Installing liblz4-1.9.1,1... | `-- Extracting liblz4-1.9.1,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.3,1: .......... done `-- Installing libuv-1.29.1... `-- Extracting libuv-1.29.1: .......... done `-- Installing ncurses-6.1.20190525... `-- Extracting ncurses-6.1.20190525: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.14.5: .......... done ===> lammps-2019.06.5 depends on file: /usr/local/bin/cmake - found ===> Returning to build of lammps-2019.06.5 ===> lammps-2019.06.5 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.3.7.txz Installing eigen-3.3.7... Extracting eigen-3.3.7: .......... done ===> lammps-2019.06.5 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of lammps-2019.06.5 ===> lammps-2019.06.5 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_2.txz Installing gcc8-8.3.0_2... `-- Installing binutils-2.32_1,1... `-- Extracting binutils-2.32_1,1: .......... done `-- Installing mpc-1.1.0_2... | `-- Installing mpfr-4.0.2... | `-- Extracting mpfr-4.0.2: .......... done `-- Extracting mpc-1.1.0_2: ......... done Extracting gcc8-8.3.0_2: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> lammps-2019.06.5 depends on executable: gfortran8 - found ===> Returning to build of lammps-2019.06.5 ===> lammps-2019.06.5 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> lammps-2019.06.5 depends on shared library: liblatte.so - not found ===> Installing existing package /packages/All/latte-1.2.1_3.txz Installing latte-1.2.1_3... `-- Installing openblas-0.2.20_8,1... `-- Extracting openblas-0.2.20_8,1: ......... done Extracting latte-1.2.1_3: ..... done ===> lammps-2019.06.5 depends on shared library: liblatte.so - found (/usr/local/lib/liblatte.so) ===> Returning to build of lammps-2019.06.5 ===> lammps-2019.06.5 depends on shared library: libpng.so - not found ===> Installing existing package /packages/All/png-1.6.37.txz Installing png-1.6.37... Extracting png-1.6.37: .......... done ===> lammps-2019.06.5 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> Returning to build of lammps-2019.06.5 ===> lammps-2019.06.5 depends on shared library: libvoro++.so - not found ===> Installing existing package /packages/All/voro++-0.4.6_1.txz Installing voro++-0.4.6_1... Extracting voro++-0.4.6_1: .......... done ===> lammps-2019.06.5 depends on shared library: libvoro++.so - found (/usr/local/lib/libvoro++.so) ===> Returning to build of lammps-2019.06.5 ===> lammps-2019.06.5 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> lammps-2019.06.5 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for lammps-2019.06.5 ===> Performing out-of-source build /bin/mkdir -p /construction/science/lammps/.build -- The CXX compiler identification is GNU 8.1.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Running check for auto-generated files from make-based build system -- The Fortran compiler identification is GNU 8.3.0 -- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- yes -- The C compiler identification is GNU 8.1.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Looking for C++ include omp.h -- Looking for C++ include omp.h - found -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /usr/local/lib/libopenblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Found JPEG: /usr/local/lib/libjpeg.so (found version "80") -- Found PNG: /usr/local/lib/libpng.so (found version "1.6.37+apng") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Found GZIP: /usr/bin/gzip -- Found FFMPEG: /usr/local/bin/ffmpeg -- Found VORO: /usr/local/lib/libvoro++.so -- Found LATTE: /usr/local/lib/liblatte.so -- Looking for C++ include cmath -- Looking for C++ include cmath - found -- Generating style_angle.h... -- Generating style_atom.h... -- Generating style_body.h... -- Generating style_bond.h... -- Generating style_command.h... -- Generating style_compute.h... -- Generating style_dihedral.h... -- Generating style_dump.h... -- Generating style_fix.h... -- Generating style_improper.h... -- Generating style_integrate.h... -- Generating style_kspace.h... -- Generating style_minimize.h... -- Generating style_nbin.h... -- Generating style_npair.h... -- Generating style_nstencil.h... -- Generating style_ntopo.h... -- Generating style_pair.h... -- Generating style_reader.h... -- Generating style_region.h... -- Generating packages_angle.h... -- Generating packages_atom.h... -- Generating packages_body.h... -- Generating packages_bond.h... -- Generating packages_command.h... -- Generating packages_compute.h... -- Generating packages_dihedral.h... -- Generating packages_dump.h... -- Generating packages_fix.h... -- Generating packages_improper.h... -- Generating packages_integrate.h... -- Generating packages_kspace.h... -- Generating packages_minimize.h... -- Generating packages_nbin.h... -- Generating packages_npair.h... -- Generating packages_nstencil.h... -- Generating packages_ntopo.h... -- Generating packages_pair.h... -- Generating packages_reader.h... -- Generating packages_region.h... -- Generating lmpinstalledpkgs.h... -- Building package: LATTE -- Building package: VORONOI -- The following packages have been found: * OpenMP * LAPACK * BLAS * JPEG * PNG * ZLIB * VORO * LATTE -- <<< Build configuration >>> Build type Release Install path /usr/local Compilers and Flags: C++ Compiler /usr/bin/c++ Type GNU Version 8.1.0 C++ Flags -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fopenmp -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include Defines LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LAMMPS_FFMPEG -- Fortran Compiler /usr/local/bin/gfortran8 Type GNU Version 8.3.0 Fortran Flags -O -Wl,-rpath=/usr/local/lib/gcc8 -O3 -DNDEBUG -O3 -- C Compiler /usr/bin/cc Type GNU Version 8.1.0 C Flags -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fopenmp -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -- Linker flags: Executable -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -- Static libraries -- Link libraries: mpi_stubs;/usr/local/lib/libjpeg.so;/usr/local/lib/libpng.so;/usr/lib/libz.so;/usr/local/lib/libvoro++.so;/usr/local/lib/liblatte.so;/usr/local/lib/libopenblas.so;m;gfortran;gcc_s;gcc;quadmath;c -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/lammps/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for lammps-2019.06.5 /usr/local/bin/cmake -S/construction/science/lammps/lammps-patch_5Jun2019/cmake -B/construction/science/lammps/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/lammps/.build/CMakeFiles /construction/science/lammps/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/msi2lmp.dir/all --- --- CMakeFiles/mpi_stubs.dir/all --- --- CMakeFiles/gitversion.dir/all --- --- CMakeFiles/msi2lmp.dir/all --- /usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/depend --- CMakeFiles/msi2lmp.dir/depend --- cd /construction/science/lammps/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/lammps/lammps-patch_5Jun2019/cmake /construction/science/lammps/lammps-patch_5Jun2019/cmake /construction/science/lammps/.build /construction/science/lammps/.build /construction/science/lammps/.build/CMakeFiles/msi2lmp.dir/DependInfo.cmake Scanning dependencies of target msi2lmp /usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make 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