=> Building science/gabedit Started : Tuesday, 9 JUL 2019 at 19:03:40 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for gabedit-2.5.1_1: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- MAKE=gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/construction/science/gabedit XDG_CONFIG_HOME=/construction/science/gabedit HOME=/construction/science/gabedit TMPDIR="/tmp" PATH=/construction/science/gabedit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/gabedit XDG_CONFIG_HOME=/construction/science/gabedit HOME=/construction/science/gabedit TMPDIR="/tmp" PATH=/construction/science/gabedit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/gabedit/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/gabedit" EXAMPLESDIR="share/examples/gabedit" DATADIR="share/gabedit" WWWDIR="www/gabedit" ETCDIR="etc/gabedit" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gabedit DOCSDIR=/usr/local/share/doc/gabedit EXAMPLESDIR=/usr/local/share/examples/gabedit WWWDIR=/usr/local/www/gabedit ETCDIR=/usr/local/etc/gabedit -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License MIT accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> gabedit-2.5.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> gabedit-2.5.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gabedit-2.5.1_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by gabedit-2.5.1_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by gabedit-2.5.1_1 for building => SHA256 Checksum OK for GabeditSrc251_061218.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by gabedit-2.5.1_1 for building ===> Extracting for gabedit-2.5.1_1 => SHA256 Checksum OK for GabeditSrc251_061218.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for gabedit-2.5.1_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> gabedit-2.5.1_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... `-- Installing gettext-runtime-0.20.1... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gettext-runtime-0.20.1: .......... done Extracting gmake-4.2.1_3: .......... done ===> gabedit-2.5.1_1 depends on executable: gmake - found ===> Returning to build of gabedit-2.5.1_1 ===> gabedit-2.5.1_1 depends on executable: gtk-update-icon-cache - not found ===> Installing existing package /packages/All/gtk-update-icon-cache-2.24.32.txz Installing gtk-update-icon-cache-2.24.32... `-- Installing atk-2.28.1... | `-- Installing glib-2.56.3_5,1... | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing libiconv-1.14_11... | | `-- Extracting libiconv-1.14_11: .......... done | | `-- Installing libxml2-2.9.9... | | `-- Extracting libxml2-2.9.9: .......... done | | `-- Installing pcre-8.43_1... | | `-- Extracting pcre-8.43_1: .......... done | | `-- Installing python36-3.6.8_2... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing libressl-2.9.2... | | `-- Extracting libressl-2.9.2: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing readline-8.0.0... | | `-- Extracting readline-8.0.0: .......... done | | `-- Extracting python36-3.6.8_2: .......... done | `-- Extracting glib-2.56.3_5,1: .......... done No schema files found: doing nothing. `-- Extracting atk-2.28.1: .......... done `-- Installing gdk-pixbuf2-2.36.12... | `-- Installing jpeg-turbo-2.0.2... | `-- Extracting jpeg-turbo-2.0.2: .......... done | `-- Installing libX11-1.6.7,1... | | `-- Installing libXau-1.0.9... | | `-- Extracting libXau-1.0.9: .......... done | | `-- Installing libXdmcp-1.1.3... | | `-- Installing xorgproto-2018.4... | | `-- Extracting xorgproto-2018.4: .......... done | | `-- Extracting libXdmcp-1.1.3: ......... done | | `-- Installing libxcb-1.13.1... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: .... done | | `-- Extracting libxcb-1.13.1: .......... done | `-- Extracting libX11-1.6.7,1: .......... done | `-- Installing png-1.6.37... | `-- Extracting png-1.6.37: .......... done | `-- Installing shared-mime-info-1.10_1... | `-- Extracting shared-mime-info-1.10_1: .......... done | `-- Installing tiff-4.0.10_1... | | `-- Installing jbigkit-2.1_1... | | `-- Extracting jbigkit-2.1_1: .......... done | `-- Extracting tiff-4.0.10_1: .......... done `-- Extracting gdk-pixbuf2-2.36.12: .......... done `-- Installing hicolor-icon-theme-0.17... `-- Extracting hicolor-icon-theme-0.17: . done `-- Installing libXcomposite-0.4.5,1... | `-- Installing libXext-1.3.4,1... | `-- Extracting libXext-1.3.4,1: .......... done | `-- Installing libXfixes-5.0.3_2... | `-- Extracting libXfixes-5.0.3_2: .......... done `-- Extracting libXcomposite-0.4.5,1: .......... done `-- Installing libXcursor-1.2.0... | `-- Installing libXrender-0.9.10_2... | `-- Extracting libXrender-0.9.10_2: .......... done `-- Extracting libXcursor-1.2.0: .......... done `-- Installing libXdamage-1.1.5... `-- Extracting libXdamage-1.1.5: ......... done `-- Installing libXi-1.7.9_2,1... `-- Extracting libXi-1.7.9_2,1: .......... done `-- Installing libXinerama-1.1.4_2,1... `-- Extracting libXinerama-1.1.4_2,1: .......... done `-- Installing libXrandr-1.5.2... `-- Extracting libXrandr-1.5.2: .......... done `-- Installing pango-1.42.4_2... | `-- Installing cairo-1.16.0,2... | | `-- Installing fontconfig-2.12.6,1... | | `-- Installing freetype2-2.10.0... | | `-- Extracting freetype2-2.10.0: .......... done | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing mesa-libs-18.3.2... | | `-- Installing libXxf86vm-1.1.4_3... | | `-- Extracting libXxf86vm-1.1.4_3: .......... done | | `-- Installing libdrm-2.4.98... | | | `-- Installing libpciaccess-0.13.5... | | | `-- Installing pciids-20190418... | | | `-- Extracting pciids-20190418: ..... done | | | `-- Extracting libpciaccess-0.13.5: ......... done | | `-- Extracting libdrm-2.4.98: .......... done | | `-- Installing libelf-0.8.13_3... | | `-- Extracting libelf-0.8.13_3: .......... done | | `-- Installing libxshmfence-1.3... | | `-- Extracting libxshmfence-1.3: ......... done | | `-- Installing wayland-1.16.0... | | `-- Extracting wayland-1.16.0: .......... done | | `-- Extracting mesa-libs-18.3.2: .......... done | | `-- Installing pixman-0.34.0_1... | | `-- Extracting pixman-0.34.0_1: .......... done | `-- Extracting cairo-1.16.0,2: .......... done | `-- Installing encodings-1.0.5,1... | | `-- Installing font-util-1.3.1... | | `-- Extracting font-util-1.3.1: .......... done | `-- Extracting encodings-1.0.5,1: .......... done | `-- Installing fribidi-0.19.7... | `-- Extracting fribidi-0.19.7: .......... done | `-- Installing harfbuzz-2.5.1... | | `-- Installing graphite2-1.3.13... | | `-- Extracting graphite2-1.3.13: .......... done | `-- Extracting harfbuzz-2.5.1: .......... done | `-- Installing libXft-2.3.2_3... | `-- Extracting libXft-2.3.2_3: .......... done | `-- Installing xorg-fonts-truetype-7.7_1... | | `-- Installing dejavu-2.37_1... | | `-- Installing mkfontscale-1.2.1... | | | `-- Installing libfontenc-1.1.4... | | | `-- Extracting libfontenc-1.1.4: ......... done | | `-- Extracting mkfontscale-1.2.1: ....... done | | `-- Extracting dejavu-2.37_1: .......... done | | `-- Installing font-bh-ttf-1.0.3_4... | | `-- Extracting font-bh-ttf-1.0.3_4: .......... done | | `-- Installing font-misc-ethiopic-1.0.3_4... | | `-- Extracting font-misc-ethiopic-1.0.3_4: ... done | | `-- Installing font-misc-meltho-1.0.3_4... | | `-- Extracting font-misc-meltho-1.0.3_4: .......... done `-- Extracting pango-1.42.4_2: .......... done Extracting gtk-update-icon-cache-2.24.32: .... done Message from python36-3.6.8_2: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from freetype2-2.10.0: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Message from dejavu-2.37_1: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> gabedit-2.5.1_1 depends on executable: gtk-update-icon-cache - found ===> Returning to build of gabedit-2.5.1_1 ===> gabedit-2.5.1_1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.6.1,1.txz Installing pkgconf-1.6.1,1... Extracting pkgconf-1.6.1,1: .......... done ===> gabedit-2.5.1_1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of gabedit-2.5.1_1 ===> gabedit-2.5.1_1 depends on package: xorgproto>=0 - found ===> gabedit-2.5.1_1 depends on package: xorgproto>=0 - found ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/ice.pc - not found ===> Installing existing package /packages/All/libICE-1.0.9_3,1.txz Installing libICE-1.0.9_3,1... Extracting libICE-1.0.9_3,1: .......... done ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> Returning to build of gabedit-2.5.1_1 ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/sm.pc - not found ===> Installing existing package /packages/All/libSM-1.2.3,1.txz Installing libSM-1.2.3,1... Extracting libSM-1.2.3,1: .......... done ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> Returning to build of gabedit-2.5.1_1 ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - not found ===> Installing existing package /packages/All/libXmu-1.1.3,1.txz Installing libXmu-1.1.3,1... `-- Installing libXt-1.1.5_2,1... `-- Extracting libXt-1.1.5_2,1: .......... done Extracting libXmu-1.1.3,1: .......... done ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> Returning to build of gabedit-2.5.1_1 ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> gabedit-2.5.1_1 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> gabedit-2.5.1_1 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> gabedit-2.5.1_1 depends on shared library: libgtkglext-x11-1.0.so - not found ===> Installing existing package /packages/All/gtkglext-1.2.0_19.txz Installing gtkglext-1.2.0_19... `-- Installing gtk2-2.24.32... | `-- Installing cups-2.2.11... | | `-- Installing avahi-app-0.7_2... | | `-- Installing dbus-1.12.12... ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | `-- Extracting dbus-1.12.12: ......... done | | `-- Installing dbus-glib-0.110... | | `-- Extracting dbus-glib-0.110: .......... done | | `-- Installing gdbm-1.18.1_1... | | `-- Extracting gdbm-1.18.1_1: .......... done | | `-- Installing gnome_subr-1.0... | | `-- Extracting gnome_subr-1.0: .... done | | `-- Installing gobject-introspection-1.56.1,1... | | `-- Extracting gobject-introspection-1.56.1,1: .......... done | | `-- Installing libdaemon-0.14_1... | | `-- Extracting libdaemon-0.14_1: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | | `-- Extracting avahi-app-0.7_2: .......... done | | `-- Installing gnutls-3.6.8... | | `-- Installing ca_root_nss-3.44... | | `-- Extracting ca_root_nss-3.44: ........ done | | `-- Installing gmp-6.1.2_1... | | `-- Extracting gmp-6.1.2_1: .......... done | | `-- Installing libidn2-2.2.0... | | | `-- Installing libunistring-0.9.10_1... | | | `-- Extracting libunistring-0.9.10_1: .......... done | | `-- Extracting libidn2-2.2.0: .......... done | | `-- Installing libtasn1-4.13_1... | | `-- Extracting libtasn1-4.13_1: .......... done | | `-- Installing nettle-3.4.1_1... | | `-- Extracting nettle-3.4.1_1: .......... done | | `-- Installing p11-kit-0.23.15... | | `-- Extracting p11-kit-0.23.15: .......... done | | `-- Installing trousers-0.3.14_2... | | | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | `-- Extracting trousers-0.3.14_2: .......... done | | `-- Extracting gnutls-3.6.8: .......... done | | `-- Installing libpaper-1.1.24.4... | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | `-- Extracting cups-2.2.11: .......... done `-- Extracting gtk2-2.24.32: .......... done `-- Installing libGLU-9.0.0_3... `-- Extracting libGLU-9.0.0_3: ...... done `-- Installing pangox-compat-0.0.2_2... `-- Extracting pangox-compat-0.0.2_2: ....... done Extracting gtkglext-1.2.0_19: .......... done Message from ca_root_nss-3.44: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from gtkglext-1.2.0_19: ===> NOTICE: The gtkglext port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> gabedit-2.5.1_1 depends on shared library: libgtkglext-x11-1.0.so - found (/usr/local/lib/libgtkglext-x11-1.0.so) ===> Returning to build of gabedit-2.5.1_1 ===> gabedit-2.5.1_1 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> gabedit-2.5.1_1 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> gabedit-2.5.1_1 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> gabedit-2.5.1_1 depends on shared library: libatk-1.0.so - found (/usr/local/lib/libatk-1.0.so) ===> gabedit-2.5.1_1 depends on shared library: libcairo.so - found (/usr/local/lib/libcairo.so) ===> gabedit-2.5.1_1 depends on shared library: libgdk_pixbuf-2.0.so - found (/usr/local/lib/libgdk_pixbuf-2.0.so) ===> gabedit-2.5.1_1 depends on shared library: libglib-2.0.so - found (/usr/local/lib/libglib-2.0.so) ===> gabedit-2.5.1_1 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> gabedit-2.5.1_1 depends on shared library: libgtk-x11-2.0.so - found (/usr/local/lib/libgtk-x11-2.0.so) ===> gabedit-2.5.1_1 depends on shared library: libpango-1.0.so - found (/usr/local/lib/libpango-1.0.so) ===> gabedit-2.5.1_1 depends on shared library: libpangox-1.0.so - found (/usr/local/lib/libpangox-1.0.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for gabedit-2.5.1_1 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for gabedit-2.5.1_1 gmake[1]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218' make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Files' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FileChooser.c -o FileChooser.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Gaussian' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceBasis.c -o GInterfaceBasis.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Common' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gabedit.c -o Gabedit.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Display' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GeomOrbXYZ.c -o GeomOrbXYZ.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Geometry' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` EnergiesCurves.c -o EnergiesCurves.o Gabedit.c: In function 'main': Gabedit.c:50:8: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] gint ierr; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Help.c -o Help.o EnergiesCurves.c: In function 'destroy_widget_null': EnergiesCurves.c:546:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i<*k;i++) ^~~ EnergiesCurves.c:549:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' g_free(GeomConv); ^~~~~~ GInterfaceBasis.c: In function 'create_basis_interface': GInterfaceBasis.c:864:14: warning: variable 'vseparator' set but not used [-Wunused-but-set-variable] GtkWidget *vseparator; ^~~~~~~~~~ GeomOrbXYZ.c: In function 'gl_read_xyz_file': GeomOrbXYZ.c:520:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(j>=(gint)n) ^~ GeomOrbXYZ.c:522:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' progress_orb(scal,GABEDIT_PROGORB_READGEOM,FALSE); ^~~~~~~~~~~~ GInterfaceBasis.c: In function 'EditBasisT': GInterfaceBasis.c:629:25: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(pathString,"%d",i); ^ GInterfaceBasis.c:629:3: note: 'sprintf' output between 2 and 11 bytes into a destination of size 10 sprintf(pathString,"%d",i); ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Fragments.c -o Fragments.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FolderChooser.c -o FolderChooser.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Install.c -o Install.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceGeom.c -o GInterfaceGeom.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ListeFiles.c -o ListeFiles.o ListeFiles.c: In function 'create_remote_frame_popup': ListeFiles.c:986:14: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ ListeFiles.c: In function 'create_local_frame_popup': ListeFiles.c:1126:14: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ ListeFiles.c: In function 'create_remote_frame': ListeFiles.c:1305:14: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ ListeFiles.c: In function 'create_local_frame': ListeFiles.c:1442:14: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceLink.c -o GInterfaceLink.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Preferences.c -o Preferences.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceMethodeBase.c -o GInterfaceMethodeBase.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GabeditFolderChooser.c -o GabeditFolderChooser.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceRoute.c -o GInterfaceRoute.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GabeditFileChooser.c -o GabeditFileChooser.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Files' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include BondsOrb.c -o BondsOrb.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Printer.c -o Printer.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gaussian.c -o Gaussian.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Run.c -o Run.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GeomDraw.c -o GeomDraw.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GeomConversion.c -o GeomConversion.o GeomConversion.c: In function 'zmat_to_xyz': GeomConversion.c:552:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ GeomConversion.c:555:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' angle *= DEG_TO_RAD; ^~~~~ GeomConversion.c:594:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ GeomConversion.c:597:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' angle *= DEG_TO_RAD; ^~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Gaussian' make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Spectrum' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SpectrumWin.c -o SpectrumWin.o Run.c: In function 'run_local_gamess.isra.2': Run.c:4994:24: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(Command ,"%s&",cmdFileAllName); ^ Run.c:4994:3: note: 'sprintf' output between 2 and 1025 bytes into a destination of size 1024 sprintf(Command ,"%s&",cmdFileAllName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include TriangleDraw.c -o TriangleDraw.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IRSpectrum.c -o IRSpectrum.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsOrb.c -o UtilsOrb.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SplashScreen.c -o SplashScreen.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GeomXYZ.c -o GeomXYZ.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Basis.c -o Basis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` RamanSpectrum.c -o RamanSpectrum.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` TextEdit.c -o TextEdit.o Basis.c: In function 'DefineSphericalBasis': Basis.c:911:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i2) ^~ GeomZmatrix.c:2797:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(k>0) show_geom_in_list(i); ^~ GeomZmatrix.c: In function 'SelectAtom': GeomZmatrix.c:3023:21: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ECDSpectrum.c -o ECDSpectrum.o ECDSpectrum.c: In function 'read_firefly_file': ECDSpectrum.c:306:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` StockIcons.c -o StockIcons.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Grid.c -o Grid.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NMRSpectrum.c -o NMRSpectrum.o NMRSpectrum.c: In function 'computeNMRSpectrumWeaklyCoupled': NMRSpectrum.c:1090:7: warning: variable 'sizeMax' set but not used [-Wunused-but-set-variable] gint sizeMax; ^~~~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Common' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DOS.c -o DOS.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ImagesGeom.c -o ImagesGeom.o ImagesGeom.c: In function 'save_ppm': ImagesGeom.c:282:6: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] int ierr; ^~~~ ImagesGeom.c: In function 'save_bmp': ImagesGeom.c:430:6: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] int ierr; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` VASPSpectra.c -o VASPSpectra.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/MolecularMechanics' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Atom.c -o Atom.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Molecule.c -o Molecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IGVPT2Spectrum.c -o IGVPT2Spectrum.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ForceField.c -o ForceField.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Spectrum' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` InterfaceGeom.c -o InterfaceGeom.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolecularMechanics.c -o MolecularMechanics.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include IsoSurface.c -o IsoSurface.o MolecularMechanics.c: In function 'calculateGradientBendAmber': MolecularMechanics.c:1484:31: warning: variable 'cosTheta' set but not used [-Wunused-but-set-variable] gdouble thetaDeg, thetaRad, cosTheta; ^~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ViewOrb.c -o ViewOrb.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Molpro' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolproLib.c -o MolproLib.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GLArea.c -o GLArea.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Measure.c -o Measure.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ConjugateGradient.c -o ConjugateGradient.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsGamess.c -o OrbitalsGamess.o ConjugateGradient.c: In function 'inverseParabolicInterpolation': ConjugateGradient.c:676:26: warning: variable 'midAB' set but not used [-Wunused-but-set-variable] gdouble pointA, pointB, midAB; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SteepestDescent.c -o SteepestDescent.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsMolpro.c -o OrbitalsMolpro.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QuasiNewton.c -o QuasiNewton.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MInterfaceBasis.c -o MInterfaceBasis.o MInterfaceBasis.c: In function 'DialogueAdd': MInterfaceBasis.c:1020:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ MInterfaceBasis.c: In function 'AjoutePageBasis': MInterfaceBasis.c:1122:13: warning: variable 'window1' set but not used [-Wunused-but-set-variable] GtkWidget *window1; ^~~~~~~ OrbitalsMolpro.c: In function 'get_orbitals_from_strorbs': OrbitalsMolpro.c:797:7: warning: variable 'i' set but not used [-Wunused-but-set-variable] gint i; ^ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolecularMechanicsDlg.c -o MolecularMechanicsDlg.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MInterfaceComm.c -o MInterfaceComm.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Molcas' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Molcas.c -o Molcas.o MInterfaceComm.c: In function 'CreateListeComm': MInterfaceComm.c:1119:13: warning: variable 'window1' set but not used [-Wunused-but-set-variable] GtkWidget *window1; ^~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasGateWay.c -o MolcasGateWay.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MInterfaceGene.c -o MInterfaceGene.o MInterfaceGene.c: In function 'create_epilogue': MInterfaceGene.c:164:14: warning: variable 'vboxo' set but not used [-Wunused-but-set-variable] GtkWidget *vboxo; ^~~~~ MolcasGateWay.c: In function 'getMolcasGeometryListOfAtomsFromInputFile': MolcasGateWay.c:774:7: warning: variable 'gateWayPos' set but not used [-Wunused-but-set-variable] long gateWayPos = 0; ^~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsOrca.c -o OrbitalsOrca.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MInterfaceGeom.c -o MInterfaceGeom.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Molpro.c -o Molpro.o Molpro.c: In function 'GetInfoZmatrix': Molpro.c:489:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(Geom[i].Nentry>NUMBER_ENTRY_ANGLE) ^~ Molpro.c:492:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' line=g_strdup_printf("%s;\n",line); ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsQChem.c -o OrbitalsQChem.o OrbitalsQChem.c: In function 'DefineQChemSphericalBasis': OrbitalsQChem.c:368:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i:()\n", dump, functionals[i].name); ^~~~~ MPQCMole.c:722:5: note: 'sprintf' output 9 or more bytes (assuming 1032) into a destination of size 1024 sprintf(buffer,"%s\t\t<%s>:()\n", dump, functionals[i].name); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MPQCMole.c:726:21: warning: ' ] ' directive writing 4 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(buffer,"%s\t\t]\n", dump); ^~~~~~~ MPQCMole.c:726:3: note: 'sprintf' output between 5 and 1028 bytes into a destination of size 1024 sprintf(buffer,"%s\t\t]\n", dump); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AtomicOrbitals.c -o AtomicOrbitals.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DeMonMolecule.c -o DeMonMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildRoZPhi.c -o BuildRoZPhi.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCGuessWaveFunction.c -o MPQCGuessWaveFunction.o BuildRoZPhi.c: In function 'select_atom': BuildRoZPhi.c:195:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DeMonKeywords.c -o DeMonKeywords.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCMpqc.c -o MPQCMpqc.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Images.c -o Images.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolecularDynamics.c -o MolecularDynamics.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildPolyPeptide.c -o BuildPolyPeptide.o DeMonKeywords.c:870:13: warning: 'putDeMonMethodInfoInTextEditor' defined but not used [-Wunused-function] static void putDeMonMethodInfoInTextEditor() ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DeMonKeywords.c: In function 'putDeMonSCFKeywordsInfoInTextEditor': DeMonKeywords.c:832:22: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buffer,"%s ",selectedScfConvergence); ^ DeMonKeywords.c:832:3: note: 'sprintf' output between 2 and 1025 bytes into a destination of size 1024 sprintf(buffer,"%s ",selectedScfConvergence); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DeMonKeywords.c:838:22: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buffer,"%s ",selectedtight); ^ DeMonKeywords.c:838:3: note: 'sprintf' output between 2 and 1025 bytes into a destination of size 1024 sprintf(buffer,"%s ",selectedtight); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridPlans.c -o GridPlans.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DeMonGuess.c -o DeMonGuess.o BuildPolyPeptide.c: In function 'add_buttons': BuildPolyPeptide.c:1453:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ GridPlans.c: In function 'create_planegrid_frame_center_vector': GridPlans.c:417:13: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DeMonBasis.c -o DeMonBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCBasis.c -o MPQCBasis.o BuildPolyPeptide.c: In function 'build_polypeptide': BuildPolyPeptide.c:771:32: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:771:7: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:770:68: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:770:43: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:746:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:746:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:745:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:745:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:733:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:733:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:732:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:732:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:713:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:713:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:712:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:712:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:721:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:721:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:720:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:720:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c: In function 'undo': BuildPolyPeptide.c:621:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:621:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:620:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:620:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c: In function 'build_c_capping': BuildPolyPeptide.c:691:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:691:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:690:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:690:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:677:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:677:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:676:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:676:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:665:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:665:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:664:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:664:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Contours.c -o Contours.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/MolecularMechanics' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCLib.c -o MPQCLib.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/DeMon' make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Gamess' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gamess.c -o Gamess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FragmentsPPD.c -o FragmentsPPD.o Contours.c: In function 'create_contours_frame_plane': Contours.c:948:13: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FragmentsPSC.c -o FragmentsPSC.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessMolecule.c -o GamessMolecule.o FragmentsPPD.c: In function 'GetFragmentPPDCOOHTerminal': FragmentsPPD.c:1673:10: warning: variable 'sigma' set but not used [-Wunused-but-set-variable] gdouble sigma = 0; ^~~~~ FragmentsPPD.c:1649:7: warning: variable 'HO' set but not used [-Wunused-but-set-variable] gint HO = -1; ^~ FragmentsPPD.c:1648:7: warning: variable 'OH' set but not used [-Wunused-but-set-variable] gint OH = -1; ^~ FragmentsPPD.c: In function 'GetFragmentPPDNH2Terminal': FragmentsPPD.c:1803:10: warning: variable 'sigma' set but not used [-Wunused-but-set-variable] gdouble sigma = 0; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ContoursDraw.c -o ContoursDraw.o GamessMolecule.c: In function 'putGamessMoleculeInTextEditor': GamessMolecule.c:615:25: warning: ' ' directive writing 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] else sprintf(buffer,"%s\n\n",g); ^~~~ GamessMolecule.c:615:7: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 else sprintf(buffer,"%s\n\n",g); ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/NWChem' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChem.c -o NWChem.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCBasisLibrary.c -o MPQCBasisLibrary.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessControl.c -o GamessControl.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PreferencesOrb.c -o PreferencesOrb.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChemMolecule.c -o NWChemMolecule.o MPQCBasisLibrary.c: In function 'newAtom': MPQCBasisLibrary.c:607:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ MPQCBasisLibrary.c: In function 'selectAtom': MPQCBasisLibrary.c:684:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ MPQCBasisLibrary.c: In function 'newAtomDlg': MPQCBasisLibrary.c:735:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ MPQCBasisLibrary.c:734:7: warning: variable 'atomNumber' set but not used [-Wunused-but-set-variable] gint atomNumber; ^~~~~~~~~~ MPQCBasisLibrary.c: In function 'newBasisDlg': MPQCBasisLibrary.c:865:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridCube.c -o GridCube.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessBasis.c -o GamessBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChemKeywords.c -o NWChemKeywords.o GridCube.c: In function 'read_gauss_molpro_cube_orbitals_file': GridCube.c:1305:7: warning: variable 'type' set but not used [-Wunused-but-set-variable] gint type; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCFunctionals.c -o MPQCFunctionals.o NWChemKeywords.c: In function 'putNWChemHLKeywordsInfoInTextEditor': NWChemKeywords.c:796:22: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s\n",selectedMethod); ^~ NWChemKeywords.c:796:3: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s\n",selectedMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c: In function 'putNWChemMethodInfoInTextEditor': NWChemKeywords.c:751:25: warning: '%s' directive writing up to 1023 bytes into a region of size 1018 [-Wformat-overflow=] sprintf(buffer,"\ntask %s ",sMethod); ^~ ~~~~~~~ NWChemKeywords.c:751:2: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 sprintf(buffer,"\ntask %s ",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:783:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s ",selectedJob); ^ NWChemKeywords.c:783:4: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s ",selectedJob); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:775:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1018 [-Wformat-overflow=] sprintf(buffer,"\ntask %s ",sMethod); ^~ ~~~~~~~ NWChemKeywords.c:775:4: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 sprintf(buffer,"\ntask %s ",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:763:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1018 [-Wformat-overflow=] sprintf(buffer,"\ntask %s ",sMethod); ^~ ~~~~~~~ NWChemKeywords.c:763:4: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 sprintf(buffer,"\ntask %s ",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c: In function 'putNWChemSCFKeywordsInfoInTextEditor': NWChemKeywords.c:705:28: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=] sprintf(buffer," thresh %s\n",selectedScfConvergence); ^~ ~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:705:4: note: 'sprintf' output between 10 and 1033 bytes into a destination of size 1024 sprintf(buffer," thresh %s\n",selectedScfConvergence); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:686:40: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(buffer," convergence energy %s\n",selectedScfConvergence); ^~ ~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:686:4: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024 sprintf(buffer," convergence energy %s\n",selectedScfConvergence); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:689:22: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s\n",selectedMethod); ^~ NWChemKeywords.c:689:3: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s\n",selectedMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessGuess.c -o GamessGuess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChemGuess.c -o NWChemGuess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCOptimization.c -o MPQCOptimization.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessSCF.c -o GamessSCF.o NWChemGuess.c: In function 'putNWChemGuessMethodInfoInTextEditor': NWChemGuess.c:70:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=] sprintf(buffer," %s ",selectedGuessMethod); ^~ ~~~~~~~~~~~~~~~~~~~ NWChemGuess.c:70:3: note: 'sprintf' output between 4 and 1027 bytes into a destination of size 1024 sprintf(buffer," %s ",selectedGuessMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChemBasis.c -o NWChemBasis.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Gamess' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FragmentsPNA.c -o FragmentsPNA.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCProperties.c -o MPQCProperties.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Psicode' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Psicode.c -o Psicode.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/NWChem' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PsicodeMolecule.c -o PsicodeMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridAdfOrbitals.c -o GridAdfOrbitals.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/MPQC' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PsicodeKeywords.c -o PsicodeKeywords.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FragmentsCrystal.c -o FragmentsCrystal.o PsicodeKeywords.c: In function 'putPsicodeMethodInfoInTextEditor': PsicodeKeywords.c:752:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=] sprintf(buffer,"energy(\"%s\")\n",sMethod); ^~ ~~~~~~~ PsicodeKeywords.c:752:2: note: 'sprintf' output between 12 and 1035 bytes into a destination of size 1024 sprintf(buffer,"energy(\"%s\")\n",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:791:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s ",selectedJob); ^ PsicodeKeywords.c:791:4: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s ",selectedJob); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:786:34: warning: '%s' directive writing up to 1023 bytes into a region of size 1011 [-Wformat-overflow=] sprintf(buffer,"frequencies(\"%s\")\n",sMethod); ^~ ~~~~~~~ PsicodeKeywords.c:786:4: note: 'sprintf' output between 17 and 1040 bytes into a destination of size 1024 sprintf(buffer,"frequencies(\"%s\")\n",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:780:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buffer,"optimize(\"%s\")\n",sMethod); ^~ ~~~~~~~ PsicodeKeywords.c:780:4: note: 'sprintf' output between 14 and 1037 bytes into a destination of size 1024 sprintf(buffer,"optimize(\"%s\")\n",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:772:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1018 [-Wformat-overflow=] sprintf(buffer,"\ntask %s ",sMethod); ^~ ~~~~~~~ PsicodeKeywords.c:772:4: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 sprintf(buffer,"\ntask %s ",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:775:34: warning: '%s' directive writing up to 1023 bytes into a region of size 1011 [-Wformat-overflow=] sprintf(buffer,"frequencies(\"%s\")\n",sMethod); ^~ ~~~~~~~ PsicodeKeywords.c:775:4: note: 'sprintf' output between 17 and 1040 bytes into a destination of size 1024 sprintf(buffer,"frequencies(\"%s\")\n",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:761:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buffer,"optimize(\"%s\")\n",sMethod); ^~ ~~~~~~~ PsicodeKeywords.c:761:4: note: 'sprintf' output between 14 and 1037 bytes into a destination of size 1024 sprintf(buffer,"optimize(\"%s\")\n",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:763:34: warning: '%s' directive writing up to 1023 bytes into a region of size 1011 [-Wformat-overflow=] sprintf(buffer,"frequencies(\"%s\")\n",sMethod); ^~ ~~~~~~~ PsicodeKeywords.c:763:4: note: 'sprintf' output between 17 and 1040 bytes into a destination of size 1024 sprintf(buffer,"frequencies(\"%s\")\n",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c: In function 'putPsicodeHLKeywordsInfoInTextEditor': PsicodeKeywords.c:806:34: warning: '%s' directive writing up to 1023 bytes into a region of size 1010 [-Wformat-overflow=] sprintf(buffer,"property('eom-%s', properties=['oscillator_strength'])\n",selectedMethod); ^~ ~~~~~~~~~~~~~~ PsicodeKeywords.c:806:4: note: 'sprintf' output between 54 and 1077 bytes into a destination of size 1024 sprintf(buffer,"property('eom-%s', properties=['oscillator_strength'])\n",selectedMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c: In function 'putPsicodeSCFKeywordsInfoInTextEditor': PsicodeKeywords.c:706:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1002 [-Wformat-overflow=] sprintf(buffer,"set scf e_convergence=%s\n",selectedScfConvergence); ^~ ~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:706:4: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024 sprintf(buffer,"set scf e_convergence=%s\n",selectedScfConvergence); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:695:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1002 [-Wformat-overflow=] sprintf(buffer,"set scf e_convergence=%s\n",selectedScfConvergence); ^~ ~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:695:4: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024 sprintf(buffer,"set scf e_convergence=%s\n",selectedScfConvergence); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PsicodeKeywords.c:698:22: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s\n",selectedMethod); ^~ PsicodeKeywords.c:698:3: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s\n",selectedMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Orca' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Orca.c -o Orca.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PsicodeGuess.c -o PsicodeGuess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridAdfDensity.c -o GridAdfDensity.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Textures.c -o Textures.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` OrcaMolecule.c -o OrcaMolecule.o PsicodeGuess.c: In function 'putPsicodeGuessMethodInfoInTextEditor': PsicodeGuess.c:66:29: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buffer,"set guess %s\n",selectedGuessMethod); ^~ ~~~~~~~~~~~~~~~~~~~ PsicodeGuess.c:66:3: note: 'sprintf' output between 12 and 1035 bytes into a destination of size 1024 sprintf(buffer,"set guess %s\n",selectedGuessMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PsicodeBasis.c -o PsicodeBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` OrcaKeywords.c -o OrcaKeywords.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Dipole.c -o Dipole.o OrcaKeywords.c: In function 'putOrcaJobTypeInfoInTextEditor': OrcaKeywords.c:652:22: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s ",selectedJob); ^ OrcaKeywords.c:652:3: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s ",selectedJob); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ OrcaKeywords.c: In function 'putOrcaSCFKeywordsInfoInTextEditor': OrcaKeywords.c:680:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=] sprintf(buffer," %s ",selectedScfConvergence); ^~ ~~~~~~~~~~~~~~~~~~~~~~ OrcaKeywords.c:680:3: note: 'sprintf' output between 4 and 1027 bytes into a destination of size 1024 sprintf(buffer," %s ",selectedScfConvergence); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ OrcaKeywords.c: In function 'putOrcaMethodInfoInTextEditor': OrcaKeywords.c:688:21: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s ",selectedMethod); ^ OrcaKeywords.c:688:2: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s ",selectedMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Psicode' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` OrcaGuess.c -o OrcaGuess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AxisGL.c -o AxisGL.o OrcaGuess.c: In function 'putOrcaGuessMethodInfoInTextEditor': OrcaGuess.c:70:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=] sprintf(buffer," %s ",selectedGuessMethod); ^~ ~~~~~~~~~~~~~~~~~~~ OrcaGuess.c:70:3: note: 'sprintf' output between 4 and 1027 bytes into a destination of size 1024 sprintf(buffer," %s ",selectedGuessMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildPolySaccharide.c -o BuildPolySaccharide.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` OrcaBasis.c -o OrcaBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildPolyNucleicAcid.c -o BuildPolyNucleicAcid.o BuildPolySaccharide.c: In function 'add_buttons': BuildPolySaccharide.c:839:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildNanoTube.c -o BuildNanoTube.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildCrystal.c -o BuildCrystal.o BuildPolyNucleicAcid.c: In function 'setTorsionAngles': BuildPolyNucleicAcid.c:378:7: warning: variable 'deltaArray1' set but not used [-Wunused-but-set-variable] gint deltaArray1[20]; ^~~~~~~~~~~ BuildPolyNucleicAcid.c:377:7: warning: variable 'alphaArray' set but not used [-Wunused-but-set-variable] gint alphaArray[20]; ^~~~~~~~~~ BuildPolyNucleicAcid.c:368:7: warning: variable 'HO2' set but not used [-Wunused-but-set-variable] gint HO2 = -1, N1 = -1, O3P = -1; ^~~ BuildPolyNucleicAcid.c:367:68: warning: variable 'O2' set but not used [-Wunused-but-set-variable] gint C4 = -1, C3P = -1, H3P = -1, C2P = -1, H2P1 = -1, H2P2 = -1, O2 = -1; ^~ BuildPolyNucleicAcid.c:367:57: warning: variable 'H2P2' set but not used [-Wunused-but-set-variable] gint C4 = -1, C3P = -1, H3P = -1, C2P = -1, H2P1 = -1, H2P2 = -1, O2 = -1; ^~~~ BuildPolyNucleicAcid.c:367:46: warning: variable 'H2P1' set but not used [-Wunused-but-set-variable] gint C4 = -1, C3P = -1, H3P = -1, C2P = -1, H2P1 = -1, H2P2 = -1, O2 = -1; ^~~~ BuildPolyNucleicAcid.c:367:26: warning: variable 'H3P' set but not used [-Wunused-but-set-variable] gint C4 = -1, C3P = -1, H3P = -1, C2P = -1, H2P1 = -1, H2P2 = -1, O2 = -1; ^~~ BuildPolyNucleicAcid.c:366:17: warning: variable 'H4P' set but not used [-Wunused-but-set-variable] gint C4P = -1, H4P = -1, O4P = -1, C1P = -1, H1P = -1, N9 = -1, C2 = -1; ^~~ BuildPolyNucleicAcid.c:365:66: warning: variable 'H5P2' set but not used [-Wunused-but-set-variable] gint P = -1, O1P = -1, O2P = -1, O5P = -1, C5P = -1, H5P1 = -1, H5P2 = -1; ^~~~ BuildPolyNucleicAcid.c:365:55: warning: variable 'H5P1' set but not used [-Wunused-but-set-variable] gint P = -1, O1P = -1, O2P = -1, O5P = -1, C5P = -1, H5P1 = -1, H5P2 = -1; ^~~~ BuildPolyNucleicAcid.c:365:25: warning: variable 'O2P' set but not used [-Wunused-but-set-variable] gint P = -1, O1P = -1, O2P = -1, O5P = -1, C5P = -1, H5P1 = -1, H5P2 = -1; ^~~ BuildPolyNucleicAcid.c:365:15: warning: variable 'O1P' set but not used [-Wunused-but-set-variable] gint P = -1, O1P = -1, O2P = -1, O5P = -1, C5P = -1, H5P1 = -1, H5P2 = -1; ^~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PersonalFragments.c -o PersonalFragments.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PrincipalAxisGL.c -o PrincipalAxisGL.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Orca' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Vibration.c -o Vibration.o PersonalFragments.c: In function 'addFragment': PersonalFragments.c:424:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] gchar* name; ^~~~ Vibration.c: In function 'print_cchemi_qff_geometries': Vibration.c:1786:11: warning: variable 'link' set but not used [-Wunused-but-set-variable] gboolean link = FALSE; ^~~~ Vibration.c: In function 'read_gaussian_file_frequencies': Vibration.c:4528:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include VibrationDraw.c -o VibrationDraw.o Vibration.c: In function 'print_thermo': Vibration.c:7684:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(str); ^~ Vibration.c:7685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' { ^ Vibration.c: In function 'add_inputThermo': Vibration.c:7703:7: warning: variable 'j' set but not used [-Wunused-but-set-variable] gint j; ^ make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/QChem' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChem.c -o QChem.o At top level: Vibration.c:99:13: warning: 'normalize_modes' defined but not used [-Wunused-function] static void normalize_modes() ^~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemMolecule.c -o QChemMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SavePersonalFragments.c -o SavePersonalFragments.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemRem.c -o QChemRem.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` LoadPersonalFragments.c -o LoadPersonalFragments.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Mopac' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Mopac.c -o Mopac.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include VibrationLocal.c -o VibrationLocal.o QChemRem.c: In function 'putQChemExchangeInfoInTextEditor': QChemRem.c:255:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer," exchange %s\n",selectedExchangeMethod); ^~ ~~~~~~~~~~~~~~~~~~~~~~ QChemRem.c:255:3: note: 'sprintf' output between 14 and 1037 bytes into a destination of size 1024 sprintf(buffer," exchange %s\n",selectedExchangeMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QChemRem.c: In function 'putQChemCorrelationInfoInTextEditor': QChemRem.c:266:34: warning: '%s' directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=] sprintf(buffer," correlation %s\n",selectedCorrelationMethod); ^~ ~~~~~~~~~~~~~~~~~~~~~~~~~ QChemRem.c:266:3: note: 'sprintf' output between 17 and 1040 bytes into a destination of size 1024 sprintf(buffer," correlation %s\n",selectedCorrelationMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemGuess.c -o QChemGuess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MopacMolecule.c -o MopacMolecule.o QChemGuess.c: In function 'putQChemGuessMethodInfoInTextEditor': QChemGuess.c:87:34: warning: '%s' directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=] sprintf(buffer," scf_guess %s\n",selectedGuessMethod); ^~ ~~~~~~~~~~~~~~~~~~~ QChemGuess.c:87:3: note: 'sprintf' output between 17 and 1040 bytes into a destination of size 1024 sprintf(buffer," scf_guess %s\n",selectedGuessMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemBasis.c -o QChemBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemLib.c -o QChemLib.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FragmentsSelector.c -o FragmentsSelector.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` OpenBabel.c -o OpenBabel.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MenuToolBarGeom.c -o MenuToolBarGeom.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MopacRem.c -o MopacRem.o OpenBabel.c: In function 'disconnect_type': OpenBabel.c:452:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable] guint nh = 0; ^~ OpenBabel.c: In function 'create_babel_dialogue': OpenBabel.c:571:13: warning: variable 'vboxwin' set but not used [-Wunused-but-set-variable] GtkWidget *vboxwin; ^~~~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Mopac' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PreviewGeom.c -o PreviewGeom.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/NetWork' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Ftp.c -o Ftp.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/QChem' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FragmentsTree.c -o FragmentsTree.o PreviewGeom.c: In function 'draw_line': PreviewGeom.c:582:19: warning: variable 'colorgray' set but not used [-Wunused-but-set-variable] GdkColor colorgray; ^~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Process.c -o Process.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Utils' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditTextEdit.c -o GabeditTextEdit.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ColorMap.c -o ColorMap.o GabeditTextEdit.c: In function 'gabedit_text_search': GabeditTextEdit.c:198:15: warning: variable 'posEnd' set but not used [-Wunused-but-set-variable] GtkTextIter posEnd; ^~~~~~ make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Symmetry' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MoleculeSymmetry.c -o MoleculeSymmetry.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AtomsProp.c -o AtomsProp.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ExportGeom.c -o ExportGeom.o ColorMap.c: In function 'new_colorMap_min_max_unicolor': ColorMap.c:221:10: warning: 'color[0]' is used uninitialized in this function [-Wuninitialized] gdouble max = color[0]; ^~~ MoleculeSymmetry.c: In function 'getAbelianGroupSymbol': MoleculeSymmetry.c:256:7: warning: variable 'ix' set but not used [-Wunused-but-set-variable] gint ix = 0; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridMolcas.c -o GridMolcas.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MoleculeSymmetryInterface.c -o MoleculeSymmetryInterface.o AtomsProp.c: In function 'open_color_dlg_atoms': AtomsProp.c:848:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] gdouble v[3]; ^ AtomsProp.c: In function 'editedIsotope': AtomsProp.c:1081:7: warning: variable 'Nc' set but not used [-Wunused-but-set-variable] gint Nc = -1; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Rsh.c -o Rsh.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` TreeMolecule.c -o TreeMolecule.o GridMolcas.c: In function 'read_molcasgrid_density_file': GridMolcas.c:933:7: warning: variable 'nMO' set but not used [-Wunused-but-set-variable] gint nMO = 0; ^~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Ssh.c -o Ssh.o TreeMolecule.c: In function 'inGroupTreeMolecule': TreeMolecule.c:260:7: warning: variable 'end' set but not used [-Wunused-but-set-variable] gint end = FALSE; ^~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DrawGeomGL.c -o DrawGeomGL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Scp.c -o Scp.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Jacobi.c -o Jacobi.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridQChem.c -o GridQChem.o DrawGeomGL.c: In function 'show_hydrogen_atoms': DrawGeomGL.c:1350:7: warning: variable 'ni' set but not used [-Wunused-but-set-variable] gint ni; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FilesTransfer.c -o FilesTransfer.o DrawGeomGL.c: In function 'setSymbolOfselectedAtomsDlg': DrawGeomGL.c:3963:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ DrawGeomGL.c: In function 'adjust_hydrogens_connected_to_atoms': DrawGeomGL.c:4939:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(geometry0) g_free(geometry0); geometry0 = NULL; ^~ DrawGeomGL.c:4939:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(geometry0) g_free(geometry0); geometry0 = NULL; ^~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include QL.c -o QL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PolyHedralOperators.c -o PolyHedralOperators.o DrawGeomGL.c: In function 'add_a_fragment': DrawGeomGL.c:7593:9: warning: variable 'OC1' set but not used [-Wunused-but-set-variable] gint OC1 = -1; ^~~ DrawGeomGL.c: In function 'create_text_win': DrawGeomGL.c:7865:13: warning: variable 'vboxwin' set but not used [-Wunused-but-set-variable] GtkWidget *vboxwin; ^~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationRotation.c -o AnimationRotation.o DrawGeomGL.c: In function 'define_geometry_from_zmat': DrawGeomGL.c:8307:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ DrawGeomGL.c:8310:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' angle *= DEG_TO_RAD; ^~~~~ DrawGeomGL.c:8339:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ DrawGeomGL.c:8342:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' angle *= DEG_TO_RAD; ^~~~~ PolyHedralOperators.c: In function 'rotateAroundArbitraryAxes': PolyHedralOperators.c:193:10: warning: variable 'eps' set but not used [-Wunused-but-set-variable] gdouble eps = 1e-3; ^~~ DrawGeomGL.c: In function 'delete_one_atom': DrawGeomGL.c:9068:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(geometry0) g_free(geometry0); geometry0 = NULL; ^~ DrawGeomGL.c:9068:36: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(geometry0) g_free(geometry0); geometry0 = NULL; ^~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` RemoteCommand.c -o RemoteCommand.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ReducePolyHedralMolecule.c -o ReducePolyHedralMolecule.o DrawGeomGL.c: In function 'gl_build_geometry': DrawGeomGL.c:10506:7: warning: variable 'ni' set but not used [-Wunused-but-set-variable] gint ni, nj; ^~ DrawGeomGL.c:10505:14: warning: variable 'rayon' set but not used [-Wunused-but-set-variable] gdouble rayon; ^~~~~ DrawGeomGL.c:10504:11: warning: variable 'colorFrag' set but not used [-Wunused-but-set-variable] GdkColor colorFrag; ^~~~~~~~~ DrawGeomGL.c:10503:11: warning: variable 'colorYellow' set but not used [-Wunused-but-set-variable] GdkColor colorYellow; ^~~~~~~~~~~ DrawGeomGL.c:10502:11: warning: variable 'colorBlue' set but not used [-Wunused-but-set-variable] GdkColor colorBlue; ^~~~~~~~~ DrawGeomGL.c: In function 'gl_build_selection': DrawGeomGL.c:10578:7: warning: variable 'ni' set but not used [-Wunused-but-set-variable] gint ni, nj; ^~ DrawGeomGL.c: In function 'NewGeomDrawingArea': DrawGeomGL.c:11352:6: warning: variable 'k' set but not used [-Wunused-but-set-variable] int k = 0; ^ AnimationRotation.c: In function 'animationRotationDlg': AnimationRotation.c:505:13: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] GtkWidget *hbox; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Transformation.c -o Transformation.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PrincipalAxis.c -o PrincipalAxis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Batch.c -o Batch.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ReduceMolecule.c -o ReduceMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationIsoSurface.c -o AnimationIsoSurface.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SymmetryOperators.c -o SymmetryOperators.o SymmetryOperators.c: In function 'determineOrderOfZAxis': SymmetryOperators.c:105:10: warning: variable 'eps' set but not used [-Wunused-but-set-variable] gdouble eps = 1e-3; ^~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GenerateMolecule.c -o GenerateMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Utils.c -o Utils.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationContours.c -o AnimationContours.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/NetWork' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` AxesGeomGL.c -o AxesGeomGL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Element.c -o Element.o AnimationContours.c: In function 'animationContoursDlg': AnimationContours.c:865:13: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] GtkWidget *hbox; ^~~~ Utils.c: In function 'run_local_command': Utils.c:658:7: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] gint ierr = 0; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationPlanesMapped.c -o AnimationPlanesMapped.o Element.c: In function 'toString': Element.c:401:15: warning: ' n = ' directive writing 5 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(n,"%s n = %d",tmp,e->n); ^~~~~ Element.c:401:2: note: 'sprintf' output between 7 and 1040 bytes into a destination of size 1024 sprintf(n,"%s n = %d",tmp,e->n); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Utils.c: In function 'variable_name_valid': Utils.c:2688:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;iactive) ^~ AnimationGeomConv.c:774:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' fprintf(file,"# %s\n",supstr); ^~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SOperation.c -o SOperation.o SOperation.c: In function 'toString': SOperation.c:77:38: warning: '%d' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] if(operation->number>1) sprintf(n," %d",operation->number); ^~ SOperation.c:77:36: note: directive argument in the range [2, 2147483647] if(operation->number>1) sprintf(n," %d",operation->number); ^~~~~ SOperation.c:77:26: note: 'sprintf' output between 3 and 12 bytes into a destination of size 10 if(operation->number>1) sprintf(n," %d",operation->number); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SOperation.c:80:39: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] if(operation->degree>1) sprintf(m,"%d ",operation->degree); ^ SOperation.c:80:26: note: 'sprintf' output between 3 and 12 bytes into a destination of size 10 if(operation->degree>1) sprintf(m,"%d ",operation->degree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SOperation.c:83:28: warning: '%s' directive writing up to 9 bytes into a region of size between 1 and 10 [-Wformat-overflow=] sprintf(operation->str,"%s%s%s",n, operation->elementType, m); ^~ SOperation.c:83:2: note: 'sprintf' output between 1 and 28 bytes into a destination of size 10 sprintf(operation->str,"%s%s%s",n, operation->elementType, m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SOperations.c -o SOperations.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` HashMapSAtoms.c -o HashMapSAtoms.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PointGroupGabedit.c -o PointGroupGabedit.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationMD.c -o AnimationMD.o AnimationMD.c: In function 'read_MD_gaussian_file_step': AnimationMD.c:2194:11: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK = FALSE; ^~ AnimationMD.c: In function 'read_MD_gamess_trj_file_step': AnimationMD.c:2499:11: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK = FALSE; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PointGroups.c -o PointGroups.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SymmetryGabedit.c -o SymmetryGabedit.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Symmetry' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsInterface.c -o UtilsInterface.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/FireFly' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FireFly.c -o FireFly.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Vector3d.c -o Vector3d.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FireFlyMolecule.c -o FireFlyMolecule.o UtilsInterface.c: In function 'read_admp_dipole_dipole_file': UtilsInterface.c:3464:9: warning: variable 'mc' set but not used [-Wunused-but-set-variable] gint mc = 0; ^~ UtilsInterface.c: In function 'read_dipole_text_file': UtilsInterface.c:3622:9: warning: variable 'mc' set but not used [-Wunused-but-set-variable] gint mc = 0; ^~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Geometry' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Matrix3D.c -o Matrix3D.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/MultiGrid' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include DomainMG.c -o DomainMG.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PovrayGL.c -o PovrayGL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridMG.c -o GridMG.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/SemiEmpirical' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` AtomSE.c -o AtomSE.o FireFlyMolecule.c: In function 'putFireFlyMoleculeInTextEditor': FireFlyMolecule.c:671:25: warning: ' ' directive writing 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] else sprintf(buffer,"%s\n\n",g); ^~~~ FireFlyMolecule.c:671:7: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 else sprintf(buffer,"%s\n\n",g); ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FireFlyControl.c -o FireFlyControl.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MoleculeSE.c -o MoleculeSE.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ContoursPov.c -o ContoursPov.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include HydrogenBond.c -o HydrogenBond.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SemiEmpiricalModel.c -o SemiEmpiricalModel.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PlanesMappedDraw.c -o PlanesMappedDraw.o HydrogenBond.c: In function 'addAnAtomDlg': HydrogenBond.c:230:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PovrayUtils.c -o PovrayUtils.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FireFlyBasis.c -o FireFlyBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SemiEmpiricalMD.c -o SemiEmpiricalMD.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsGL.c -o UtilsGL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PlanesMapped.c -o PlanesMapped.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FireFlyGuess.c -o FireFlyGuess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FireFlySCF.c -o FireFlySCF.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ConvUtils.c -o ConvUtils.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PlanesMappedPov.c -o PlanesMappedPov.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/FireFly' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditXYPlot.c -o GabeditXYPlot.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include SurfacesPov.c -o SurfacesPov.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/VibrationalCorrections' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GabeditGaussianInput.c -o GabeditGaussianInput.o GabeditXYPlot.c: In function 'set_object_line_dialog': GabeditXYPlot.c:1303:15: warning: variable 'line_style' set but not used [-Wunused-but-set-variable] GdkLineStyle line_style = GDK_LINE_SOLID; ^~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SemiEmpirical.c -o SemiEmpirical.o GabeditXYPlot.c: In function 'read_data_1column': GabeditXYPlot.c:1982:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ GabeditXYPlot.c: In function 'read_data_2columns': GabeditXYPlot.c:2074:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ GabeditXYPlot.c: In function 'draw_points': GabeditXYPlot.c:7544:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditXYPlot.c: In function 'draw_hmajor_ticks_and_xlegends': GabeditXYPlot.c:7825:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditXYPlot.c: In function 'draw_vmajor_ticks_and_ylegends': GabeditXYPlot.c:7953:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include RingsPov.c -o RingsPov.o GabeditXYPlot.c: In function 'gabedit_xyplot_motion_notify': GabeditXYPlot.c:9145:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (y > (xyplot->plotting_rect.y + xyplot->plotting_rect.height)) ^~ GabeditXYPlot.c:9148:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' xyplot->distance_rect.x=xyplot->distance_point.x; ^~~~~~ GabeditXYPlot.c: In function 'gabedit_xyplot_set_x_label': GabeditXYPlot.c:10571:13: warning: variable 'widget' set but not used [-Wunused-but-set-variable] GtkWidget* widget = NULL; ^~~~~~ GabeditXYPlot.c: In function 'gabedit_xyplot_set_y_label': GabeditXYPlot.c:10594:13: warning: variable 'widget' set but not used [-Wunused-but-set-variable] GtkWidget* widget = NULL; ^~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include MenuToolBarGL.c -o MenuToolBarGL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SemiEmpiricalDlg.c -o SemiEmpiricalDlg.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/VibrationalCorrections' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include LabelsGL.c -o LabelsGL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PoissonMG.c -o PoissonMG.o SemiEmpiricalDlg.c:1312:13: warning: 'runGeneric' defined but not used [-Wunused-function] static void runGeneric(MoleculeSE* mol, char* fileName, char* keys, char* genericCommand) ^~~~~~~~~~ PoissonMG.c: In function 'smootherPoissonMG': PoissonMG.c:613:10: warning: variable 'rms' set but not used [-Wunused-but-set-variable] gdouble rms; ^~~ PoissonMG.c: In function 'solveCGPoissonMG': PoissonMG.c:687:10: warning: variable 'delta0' set but not used [-Wunused-but-set-variable] gdouble delta0; ^~~~~~ LabelsGL.c: In function 'showLabelSymbolsNumbersCharges': LabelsGL.c:125:21: warning: '%s' directive writing up to 1023 bytes into a region of size between 1015 and 1024 [-Wformat-overflow=] sprintf(buffer,"%s%s%s",bSymbol,bNumber,bCharge); ^~ ~~~~~~~ LabelsGL.c:125:3: note: 'sprintf' output between 1 and 1042 bytes into a destination of size 1024 sprintf(buffer,"%s%s%s",bSymbol,bNumber,bCharge); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/IsotopeDistribution' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IsotopeDistributionCalculator.c -o IsotopeDistributionCalculator.o IsotopeDistributionCalculator.c: In function 'compute_peaks': IsotopeDistributionCalculator.c:252:7: warning: variable 'nRemoved' set but not used [-Wunused-but-set-variable] gint nRemoved; ^~~~~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/MultiGrid' make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/QFF' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gabedit2MRQFF.c -o Gabedit2MRQFF.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include RingsOrb.c -o RingsOrb.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IsotopeDistributionCalculatorDlg.c -o IsotopeDistributionCalculatorDlg.o IsotopeDistributionCalculatorDlg.c: In function 'editedPeak': IsotopeDistributionCalculatorDlg.c:274:9: warning: variable 'peaks' set but not used [-Wunused-but-set-variable] GList* peaks; ^~~~~ IsotopeDistributionCalculatorDlg.c:273:7: warning: variable 'Nc' set but not used [-Wunused-but-set-variable] gint Nc = -1; ^~ RingsOrb.c: In function 'messagesNumberOfRings.isra.0': RingsOrb.c:702:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 1004 and 1014 [-Wformat-overflow=] sprintf(buffer,"I found %d %s\n",nR[i], buffer1); ^~ ~~~~~~~ RingsOrb.c:702:3: note: 'sprintf' output between 12 and 1045 bytes into a destination of size 1024 sprintf(buffer,"I found %d %s\n",nR[i], buffer1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/IsotopeDistribution' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditContoursPlot.c -o GabeditContoursPlot.o GabeditContoursPlot.c: In function 'create_contours_frame': GabeditContoursPlot.c:1651:13: warning: variable 'LabelMax' set but not used [-Wunused-but-set-variable] GtkWidget *LabelMax = NULL; ^~~~~~~~ GabeditContoursPlot.c:1650:13: warning: variable 'LabelMin' set but not used [-Wunused-but-set-variable] GtkWidget *LabelMin = NULL; ^~~~~~~~ GabeditContoursPlot.c: In function 'create_contours': GabeditContoursPlot.c:1741:13: warning: variable 'frame' set but not used [-Wunused-but-set-variable] GtkWidget *frame; ^~~~~ GabeditContoursPlot.c: In function 'set_object_line_dialog': GabeditContoursPlot.c:2455:15: warning: variable 'line_style' set but not used [-Wunused-but-set-variable] GdkLineStyle line_style = GDK_LINE_SOLID; ^~~~~~~~~~ GabeditContoursPlot.c: In function 'applyColorMapOptions': GabeditContoursPlot.c:5960:13: warning: variable 'buttonUniColor' set but not used [-Wunused-but-set-variable] GtkWidget* buttonUniColor; ^~~~~~~~~~~~~~ GabeditContoursPlot.c: In function 'draw_points': GabeditContoursPlot.c:7537:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditContoursPlot.c: In function 'draw_colormap': GabeditContoursPlot.c:7816:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditContoursPlot.c: In function 'draw_hmajor_ticks_and_xlegends': GabeditContoursPlot.c:7992:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditContoursPlot.c: In function 'draw_vmajor_ticks_and_ylegends': GabeditContoursPlot.c:8122:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditContoursPlot.c: In function 'gabedit_contoursplot_motion_notify': GabeditContoursPlot.c:9539:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (y > (contoursplot->plotting_rect.y + contoursplot->plotting_rect.height)) ^~ GabeditContoursPlot.c:9542:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' contoursplot->distance_rect.x=contoursplot->distance_point.x; ^~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ExportGL.c -o ExportGL.o GabeditContoursPlot.c: In function 'gabedit_contoursplot_set_x_label': GabeditContoursPlot.c:10979:13: warning: variable 'widget' set but not used [-Wunused-but-set-variable] GtkWidget* widget = NULL; ^~~~~~ GabeditContoursPlot.c: In function 'gabedit_contoursplot_set_y_label': GabeditContoursPlot.c:11002:13: warning: variable 'widget' set but not used [-Wunused-but-set-variable] GtkWidget* widget = NULL; ^~~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/QFF' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include CaptureOrbitals.c -o CaptureOrbitals.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsCairo.c -o UtilsCairo.o UtilsCairo.c: In function 'gabedit_cairo_string': UtilsCairo.c:63:2: warning: enumeration value 'PANGO_WEIGHT_SEMILIGHT' not handled in switch [-Wswitch] switch(weight) ^~~~~~ make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Crystallography' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Crystallo.c -o Crystallo.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include IntegralOrbitals.c -o IntegralOrbitals.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/SemiEmpirical' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Zlm.c -o Zlm.o Crystallo.c:51:13: warning: 'transposeMatrix3D' defined but not used [-Wunused-function] static void transposeMatrix3D(gdouble mat[][3]) ^~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsCIF.c -o UtilsCIF.o UtilsCIF.c:198:13: warning: 'print_block' defined but not used [-Wunused-function] static void print_block(GList* list) ^~~~~~~~~~~ make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/gl2ps' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include gl2ps.c -o gl2ps.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditSPG.c -o GabeditSPG.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditKPoints.c -o GabeditKPoints.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/spglib' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include arithmetic.c -o arithmetic.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include cell.c -o cell.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include debug.c -o debug.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include delaunay.c -o delaunay.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridCP.c -o GridCP.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include determination.c -o determination.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include hall_symbol.c -o hall_symbol.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include kgrid.c -o kgrid.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/gl2ps' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include MathFunctions.c -o MathFunctions.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include kpoint.c -o kpoint.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include mathfunc.c -o mathfunc.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Crystallography' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GTF.c -o GTF.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include niggli.c -o niggli.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include overlap.c -o overlap.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include pointgroup.c -o pointgroup.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include primitive.c -o primitive.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include TTables.c -o TTables.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include refinement.c -o refinement.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationGrids.c -o AnimationGrids.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include sitesym_database.c -o sitesym_database.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Interpolation.c -o Interpolation.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include site_symmetry.c -o site_symmetry.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Point3D.c -o Point3D.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spacegroup.c -o spacegroup.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsVASP.c -o UtilsVASP.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include NCI.c -o NCI.o UtilsVASP.c: In function 'read_atom_types_vasp_xml_file': UtilsVASP.c:113:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if(t[i]=='<') ^ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spg_database.c -o spg_database.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ReactivityIndices.c -o ReactivityIndices.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spglib.c -o spglib.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spglib_f.c -o spglib_f.o spglib_f.c: In function 'spg_get_international_': spglib_f.c:135:5: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] strncpy(symbol, symbol_c, length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spglib_f.c:134:14: note: length computed here length = strlen(symbol_c); ^~~~~~~~~~~~~~~~ spglib_f.c: In function 'spg_get_schoenflies_': spglib_f.c:177:5: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] strncpy(symbol, symbol_c, length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spglib_f.c:176:14: note: length computed here length = strlen(symbol_c); ^~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spin.c -o spin.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include symmetry.c -o symmetry.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Utils' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include tetrahedron_method.c -o tetrahedron_method.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/spglib' make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Display' mkdir -p tmp cp src/Common/*.o src/Spectrum/*.o src/Files/*.o src/DeMon/*.o src/Gamess/*.o src/Gaussian/*.o src/Geometry/*.o src/MolecularMechanics/*.o src/Molcas/*.o src/Molpro/*.o src/Mopac/*.o src/MPQC/*.o src/MultiGrid/*.o src/NetWork/*.o src/Display/*.o src/FireFly/*.o src/NWChem/*.o src/Psicode/*.o src/Orca/*.o src/QChem/*.o src/SemiEmpirical/*.o src/Utils/*.o src/Symmetry/*.o src/VibrationalCorrections/*.o src/QFF/*.o src/IsotopeDistribution/*.o src/Crystallography/*.o gl2ps/*.o spglib/*.o tmp cc tmp/*.o -o gabedit -lX11 `pkg-config gtk+-2.0 --libs` -lpangox-1.0 `pkg-config gtkglext-1.0 --libs` -L/usr/local/lib -lGL -L/usr/lib -lGLU -lpthread -L/usr/local/lib -lgomp -g -lm gmake[1]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> gabedit-2.5.1_1 depends on executable: gtk-update-icon-cache - found ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> gabedit-2.5.1_1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for gabedit-2.5.1_1 ===> Generating temporary packing list install -s -m 555 /construction/science/gabedit/GabeditSrc251_061218/gabedit /construction/science/gabedit/stage/usr/local/bin/ install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/utils/Others/gabedit.desktop /construction/science/gabedit/stage/usr/local/share/applications install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/icons/Gabedit16.png /construction/science/gabedit/stage/usr/local/share/icons/hicolor/16x16/apps/gabedit.png install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/icons/Gabedit24.png /construction/science/gabedit/stage/usr/local/share/icons/hicolor/24x24/apps/gabedit.png install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/icons/Gabedit32.png /construction/science/gabedit/stage/usr/local/share/icons/hicolor/32x32/apps/gabedit.png install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/icons/Gabedit48.png /construction/science/gabedit/stage/usr/local/share/icons/hicolor/48x48/apps/gabedit.png ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for gabedit-2.5.1_1 file sizes/checksums [9]: . done packing files [9]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Tuesday, 9 JUL 2019 at 19:06:00 UTC Duration: 00:02:20