=> Building science/atompaw Started : Sunday, 7 JUL 2019 at 22:57:36 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for atompaw-4.1.0.5_2: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/construction/science/atompaw XDG_CONFIG_HOME=/construction/science/atompaw HOME=/construction/science/atompaw TMPDIR="/tmp" PATH=/construction/science/atompaw/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/atompaw XDG_CONFIG_HOME=/construction/science/atompaw HOME=/construction/science/atompaw TMPDIR="/tmp" PATH=/construction/science/atompaw/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/atompaw/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/atompaw" EXAMPLESDIR="share/examples/atompaw" DATADIR="share/atompaw" WWWDIR="www/atompaw" ETCDIR="etc/atompaw" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/atompaw DOCSDIR=/usr/local/share/doc/atompaw EXAMPLESDIR=/usr/local/share/examples/atompaw WWWDIR=/usr/local/www/atompaw ETCDIR=/usr/local/etc/atompaw -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> atompaw-4.1.0.5_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> atompaw-4.1.0.5_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of atompaw-4.1.0.5_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by atompaw-4.1.0.5_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by atompaw-4.1.0.5_2 for building => SHA256 Checksum OK for atompaw-4.1.0.5.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by atompaw-4.1.0.5_2 for building ===> Extracting for atompaw-4.1.0.5_2 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by atompaw-4.1.0.5_2 for building => SHA256 Checksum OK for atompaw-4.1.0.5.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for atompaw-4.1.0.5_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> atompaw-4.1.0.5_2 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_2.txz Installing gcc8-8.3.0_2... `-- Installing binutils-2.32_1,1... | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.20.1: .......... done `-- Extracting binutils-2.32_1,1: .......... done `-- Installing gmp-6.1.2_1... `-- Extracting gmp-6.1.2_1: .......... done `-- Installing mpc-1.1.0_2... | `-- Installing mpfr-4.0.2... | `-- Extracting mpfr-4.0.2: .......... done `-- Extracting mpc-1.1.0_2: ......... done Extracting gcc8-8.3.0_2: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> atompaw-4.1.0.5_2 depends on executable: gfortran8 - found ===> Returning to build of atompaw-4.1.0.5_2 ===> atompaw-4.1.0.5_2 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... Extracting gmake-4.2.1_3: .......... done ===> atompaw-4.1.0.5_2 depends on executable: gmake - found ===> Returning to build of atompaw-4.1.0.5_2 ===> atompaw-4.1.0.5_2 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> atompaw-4.1.0.5_2 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.5.0_7.txz Installing lapack-3.5.0_7... `-- Installing blas-3.5.0_5... `-- Extracting blas-3.5.0_5: ....... done Extracting lapack-3.5.0_7: .......... done ===> atompaw-4.1.0.5_2 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of atompaw-4.1.0.5_2 ===> atompaw-4.1.0.5_2 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for atompaw-4.1.0.5_2 configure: loading site script /xports/Templates/config.site configure: regenerating the VERSION file checking build system type... x86_64-portbld-dragonfly5.4 checking host system type... x86_64-portbld-dragonfly5.4 checking target system type... x86_64-portbld-dragonfly5.4 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for gawk... (cached) /usr/bin/awk checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for dvipdf... no checking for latex... no checking for pdflatex... no checking for perl... no checking for gfortran8... /usr/local/bin/gfortran8 checking whether the Fortran compiler works... yes checking for Fortran compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU Fortran compiler... yes checking whether gfortran8 accepts -g... yes checking which type of Fortran compiler we have... gnu 8.3 checking fortran 90 modules extension... mod checking for Fortran flag to compile .F90 files... none configure: determining Fortran module case checking whether Fortran modules are upper-case... no checking whether the Fortran compiler provides the iso_c_binding module... yes checking whether the Fortran compiler accepts flush()... yes checking whether the Fortran compiler accepts flush_()... no checking how to print strings... printf checking for style of include used by gmake... GNU checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking how to convert x86_64-portbld-dragonfly5.4 file names to x86_64-portbld-dragonfly5.4 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly5.4 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly5.4 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran8 option to produce PIC... -fPIC checking if gfortran8 PIC flag -fPIC works... yes checking if gfortran8 static flag -static works... yes checking if gfortran8 supports -c -o file.o... yes checking if gfortran8 supports -c -o file.o... (cached) yes checking whether the gfortran8 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly5.4 ld.so checking how to hardcode library paths into programs... immediate configure: configure: ===== Looking for Linear Algebra libraries configure: ...Linear Algebra: trying with current environment checking for library containing zhpev... none required checking for library containing zgemm... none required configure: => Linear Algebra libraries were found on the system checking whether Linear Algebra libraries work... yes configure: ===== Linear Algebra libraries OK for use configure: configure: FC = gfortran8 configure: CPPFLAGS = configure: FCFLAGS = -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 configure: LDFLAGS = -lblas -llapack -lblas -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin configure: LIBS = -lblas -llapack -lblas checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/pkginfo.f90 config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for atompaw-4.1.0.5_2 gmake[2]: Entering directory '/construction/science/atompaw/atompaw-4.1.0.5' gmake all-recursive gmake[3]: Entering directory '/construction/science/atompaw/atompaw-4.1.0.5' Making all in src gmake[4]: Entering directory '/construction/science/atompaw/atompaw-4.1.0.5/src' /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -pipe -O2 -fno-strict-aliasing -MT libxc_tools.lo -MD -MP -MF .deps/libxc_tools.Tpo -c -o libxc_tools.lo libxc_tools.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -pipe -O2 -fno-strict-aliasing -MT libxc_tools.lo -MD -MP -MF .deps/libxc_tools.Tpo -c libxc_tools.c -o libxc_tools.o mv -f .deps/libxc_tools.Tpo .deps/libxc_tools.Plo /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o tools_mod.lo tools_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c tools_mod.F90 -o tools_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o atomdata.lo atomdata.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c atomdata.F90 -o atomdata.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o globalmath.lo globalmath.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c globalmath.F90 -o globalmath.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o gridmod.lo gridmod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c gridmod.F90 -o gridmod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o search_sort.lo search_sort.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c search_sort.F90 -o search_sort.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o blockdavidson_mod.lo blockdavidson_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c blockdavidson_mod.F90 -o blockdavidson_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o numerov_mod.lo numerov_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c numerov_mod.F90 -o numerov_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o radialdirac.lo radialdirac.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c radialdirac.F90 -o radialdirac.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o radialsr.lo radialsr.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c radialsr.F90 -o radialsr.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o general_mod.lo general_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c general_mod.F90 -o general_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o libxc_mod.lo libxc_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c libxc_mod.F90 -o libxc_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o excor.lo excor.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c excor.F90 -o excor.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o anderson_driver.lo anderson_driver.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c anderson_driver.F90 -o anderson_driver.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o exxdata.lo exxdata.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c exxdata.F90 -o exxdata.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o fock.lo fock.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c fock.F90 -o fock.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o report_mod.lo report_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c report_mod.F90 -o report_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o hf_mod.lo hf_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c hf_mod.F90 -o hf_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o exx_mod.lo exx_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c exx_mod.F90 -o exx_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o ldagga_mod.lo ldagga_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c ldagga_mod.F90 -o ldagga_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o aeatom.lo aeatom.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c aeatom.F90 -o aeatom.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o pseudodata.lo pseudodata.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c pseudodata.F90 -o pseudodata.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o pseudo_sub.lo pseudo_sub.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c pseudo_sub.F90 -o pseudo_sub.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o exx_pseudo.lo exx_pseudo.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c exx_pseudo.F90 -o exx_pseudo.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o paw_sub.lo paw_sub.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c paw_sub.F90 -o paw_sub.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o hf_pseudo.lo hf_pseudo.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c hf_pseudo.F90 -o hf_pseudo.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o interpolation_mod.lo interpolation_mod.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c interpolation_mod.F90 -o interpolation_mod.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o pseudo.lo pseudo.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c pseudo.F90 -o pseudo.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o pkginfo.lo pkginfo.f90 libtool: compile: gfortran8 -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c pkginfo.f90 -o pkginfo.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o abinitinterface.lo abinitinterface.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c abinitinterface.F90 -o abinitinterface.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o pwscfinterface.lo pwscfinterface.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c pwscfinterface.F90 -o pwscfinterface.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o xmlinterface.lo xmlinterface.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c xmlinterface.F90 -o xmlinterface.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o atompaw_report.lo atompaw_report.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c atompaw_report.F90 -o atompaw_report.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o graphatom_report.lo graphatom_report.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c graphatom_report.F90 -o graphatom_report.o /bin/sh ../libtool --tag=FC --mode=compile gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o atompaw_lib.lo atompaw_lib.F90 libtool: compile: gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c atompaw_lib.F90 -o atompaw_lib.o /bin/sh ../libtool --tag=FC --mode=link gfortran8 -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -version-info 0:0:0 -lblas -llapack -lblas -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o libatompaw.la -rpath /usr/local/lib libxc_tools.lo tools_mod.lo general_mod.lo globalmath.lo search_sort.lo aeatom.lo anderson_driver.lo atomdata.lo blockdavidson_mod.lo excor.lo exx_mod.lo exx_pseudo.lo exxdata.lo fock.lo gridmod.lo hf_mod.lo hf_pseudo.lo interpolation_mod.lo ldagga_mod.lo libxc_mod.lo numerov_mod.lo paw_sub.lo pseudo_sub.lo pseudo.lo pseudodata.lo radialdirac.lo radialsr.lo report_mod.lo abinitinterface.lo pwscfinterface.lo xmlinterface.lo atompaw_report.lo graphatom_report.lo atompaw_lib.lo pkginfo.lo -lblas -llapack -lblas libtool: link: /usr/local/bin/ar cru .libs/libatompaw.a libxc_tools.o tools_mod.o general_mod.o globalmath.o search_sort.o aeatom.o anderson_driver.o atomdata.o blockdavidson_mod.o excor.o exx_mod.o exx_pseudo.o exxdata.o fock.o gridmod.o hf_mod.o hf_pseudo.o interpolation_mod.o ldagga_mod.o libxc_mod.o numerov_mod.o paw_sub.o pseudo_sub.o pseudo.o pseudodata.o radialdirac.o radialsr.o report_mod.o abinitinterface.o pwscfinterface.o xmlinterface.o atompaw_report.o graphatom_report.o atompaw_lib.o pkginfo.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: /usr/local/bin/ranlib .libs/libatompaw.a libtool: link: ( cd ".libs" && rm -f "libatompaw.la" && ln -s "../libatompaw.la" "libatompaw.la" ) gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o atompaw_prog.o atompaw_prog.F90 /bin/sh ../libtool --tag=FC --mode=link gfortran8 -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -lblas -llapack -lblas -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o atompaw atompaw_prog.o libatompaw.la -lblas -llapack -lblas libtool: link: gfortran8 -Wl,-rpath=/usr/local/lib/gcc8 -Wl,-rpath=/usr/local/lib/gcc8 -B/usr/local/bin -o atompaw atompaw_prog.o -L/usr/local/lib -L/usr/local/lib/gcc8 ./.libs/libatompaw.a -llapack -lblas gfortran8 -DHAVE_CONFIG_H -I. -I.. -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -c -o graphatom.o graphatom.F90 /bin/sh ../libtool --tag=FC --mode=link gfortran8 -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -lblas -llapack -lblas -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o graphatom graphatom.o libatompaw.la -lblas -llapack -lblas libtool: link: gfortran8 -Wl,-rpath=/usr/local/lib/gcc8 -Wl,-rpath=/usr/local/lib/gcc8 -B/usr/local/bin -o graphatom graphatom.o -L/usr/local/lib -L/usr/local/lib/gcc8 ./.libs/libatompaw.a -llapack -lblas gmake[4]: Leaving directory '/construction/science/atompaw/atompaw-4.1.0.5/src' gmake[4]: Entering directory '/construction/science/atompaw/atompaw-4.1.0.5' gmake[4]: Nothing to be done for 'all-am'. gmake[4]: Leaving directory '/construction/science/atompaw/atompaw-4.1.0.5' gmake[3]: Leaving directory '/construction/science/atompaw/atompaw-4.1.0.5' gmake[2]: Leaving directory '/construction/science/atompaw/atompaw-4.1.0.5' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> atompaw-4.1.0.5_2 depends on executable: gfortran8 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for atompaw-4.1.0.5_2 ===> Generating temporary packing list gmake[2]: Entering directory '/construction/science/atompaw/atompaw-4.1.0.5' Making install in src gmake[3]: Entering directory '/construction/science/atompaw/atompaw-4.1.0.5/src' gmake[4]: Entering directory '/construction/science/atompaw/atompaw-4.1.0.5/src' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libatompaw.la '/construction/science/atompaw/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libatompaw.lai /construction/science/atompaw/stage/usr/local/lib/libatompaw.la libtool: install: /usr/bin/install -c .libs/libatompaw.a /construction/science/atompaw/stage/usr/local/lib/libatompaw.a libtool: install: chmod 644 /construction/science/atompaw/stage/usr/local/lib/libatompaw.a libtool: install: /usr/local/bin/ranlib /construction/science/atompaw/stage/usr/local/lib/libatompaw.a libtool: install: warning: remember to run `libtool --finish /usr/local/lib' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/bin' /bin/sh ../libtool --mode=install install -s -m 555 atompaw graphatom '/construction/science/atompaw/stage/usr/local/bin' libtool: install: install -m 555 -s atompaw /construction/science/atompaw/stage/usr/local/bin/atompaw libtool: install: install -m 555 -s graphatom /construction/science/atompaw/stage/usr/local/bin/graphatom gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/science/atompaw/atompaw-4.1.0.5/src' gmake[3]: Leaving directory '/construction/science/atompaw/atompaw-4.1.0.5/src' gmake[3]: Entering directory '/construction/science/atompaw/atompaw-4.1.0.5' gmake[4]: Entering directory '/construction/science/atompaw/atompaw-4.1.0.5' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/share/doc/atompaw' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/Na/outputdata' install -m 0644 example/Na/outputdata/in example/Na/outputdata/Na.atomicdata example/Na/outputdata/Na.LDA-PW-paw.abinit example/Na/outputdata/Na.LDA-PW-paw.UPF '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/Na/outputdata' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/F/lda' install -m 0644 example/F/lda/F.input example/F/lda/F.atomicdata example/F/lda/F.LDA-PW-paw.abinit example/F/lda/F.LDA-PW-paw.UPF '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/F/lda' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/Li/lda' install -m 0644 example/Li/lda/Li.input example/Li/lda/Li.atomicdata example/Li/lda/Li.LDA-PW-paw.abinit example/Li/lda/Li.LDA-PW-paw.UPF '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/Li/lda' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/doc/scripts' install -m 0644 doc/scripts/explorelogderiv doc/scripts/explorewfn doc/scripts/plotdensity doc/scripts/plotlogderiv doc/scripts/plotpotential doc/scripts/plotwfn '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/doc/scripts' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/Li/hf' install -m 0644 example/Li/hf/Li.input example/Li/hf/Li.atomicdata '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/Li/hf' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/F/hf' install -m 0644 example/F/hf/F.input example/F/hf/F.atomicdata '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/example/F/hf' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/doc' install -m 0644 doc/atompaw-usersguide.pdf doc/atompaw-usersguide.doc doc/ATOMPAW_Explore_Userguide.pdf doc/ATOMPAW_Explore_Userguide.odt '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/doc' /bin/mkdir -p '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/doc/exploresetup' install -m 0644 doc/exploresetup/ParameterExplore.cpp doc/exploresetup/ParameterExploreReadMe.txt '/construction/science/atompaw/stage/usr/local/share/doc/atompaw/doc/exploresetup' gmake[4]: Leaving directory '/construction/science/atompaw/atompaw-4.1.0.5' gmake[3]: Leaving directory '/construction/science/atompaw/atompaw-4.1.0.5' gmake[2]: Leaving directory '/construction/science/atompaw/atompaw-4.1.0.5' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for atompaw-4.1.0.5_2 file sizes/checksums [34]: . done packing files [34]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 7 JUL 2019 at 22:58:15 UTC Duration: 00:00:39