=> Building science/apbs Started : Tuesday, 9 JUL 2019 at 18:13:24 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/apbs XDG_CONFIG_HOME=/construction/science/apbs HOME=/construction/science/apbs TMPDIR="/tmp" PATH=/construction/science/apbs/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/apbs XDG_CONFIG_HOME=/construction/science/apbs HOME=/construction/science/apbs TMPDIR="/tmp" PATH=/construction/science/apbs/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/apbs/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- CMAKE_BUILD_TYPE="release" OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/apbs" EXAMPLESDIR="share/examples/apbs" DATADIR="share/apbs" WWWDIR="www/apbs" ETCDIR="etc/apbs" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/apbs DOCSDIR=/usr/local/share/doc/apbs EXAMPLESDIR=/usr/local/share/examples/apbs WWWDIR=/usr/local/www/apbs ETCDIR=/usr/local/etc/apbs -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License MIT accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> apbs-1.5.102 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> apbs-1.5.102 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of apbs-1.5.102 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by apbs-1.5.102 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by apbs-1.5.102 for building => SHA256 Checksum OK for Electrostatics-apbs-pdb2pqr-apbs-1.5-102-g500c1473_GH0.tar.gz. => SHA256 Checksum OK for Electrostatics-FETK-0c6fdea_GH0.tar.gz. => SHA256 Checksum OK for Electrostatics-geoflow_c-e8ce510_GH0.tar.gz. => SHA256 Checksum OK for lwwilson1-TABIPB-7e3a407_GH0.tar.gz. => SHA256 Checksum OK for lwwilson1-mesh_routines-ddb75cb_GH0.tar.gz. => SHA256 Checksum OK for davas301-pb_solvers-4858465_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by apbs-1.5.102 for building ===> Extracting for apbs-1.5.102 => SHA256 Checksum OK for Electrostatics-apbs-pdb2pqr-apbs-1.5-102-g500c1473_GH0.tar.gz. => SHA256 Checksum OK for Electrostatics-FETK-0c6fdea_GH0.tar.gz. => SHA256 Checksum OK for Electrostatics-geoflow_c-e8ce510_GH0.tar.gz. => SHA256 Checksum OK for lwwilson1-TABIPB-7e3a407_GH0.tar.gz. => SHA256 Checksum OK for lwwilson1-mesh_routines-ddb75cb_GH0.tar.gz. => SHA256 Checksum OK for davas301-pb_solvers-4858465_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for apbs-1.5.102 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> apbs-1.5.102 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.14.5.txz Installing cmake-3.14.5... `-- Installing curl-7.65.1... | `-- Installing ca_root_nss-3.44... | `-- Extracting ca_root_nss-3.44: ........ done | `-- Installing libnghttp2-1.39.1... | `-- Extracting libnghttp2-1.39.1: .......... done | `-- Installing libressl-2.9.2... | `-- Extracting libressl-2.9.2: .......... done `-- Extracting curl-7.65.1: .......... done `-- Installing expat-2.2.6_1... `-- Extracting expat-2.2.6_1: .......... done `-- Installing jsoncpp-1.8.1_6... `-- Extracting jsoncpp-1.8.1_6: .......... done `-- Installing libarchive-3.3.3,1... | `-- Installing liblz4-1.9.1,1... | `-- Extracting liblz4-1.9.1,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.3,1: .......... done `-- Installing libuv-1.29.1... `-- Extracting libuv-1.29.1: .......... done `-- Installing ncurses-6.1.20190525... `-- Extracting ncurses-6.1.20190525: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.14.5: .......... done Message from ca_root_nss-3.44: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> apbs-1.5.102 depends on file: /usr/local/bin/cmake - found ===> Returning to build of apbs-1.5.102 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for apbs-1.5.102 ===> Performing out-of-source build /bin/mkdir -p /construction/science/apbs/.build -- The C compiler identification is GNU 8.1.0 -- The CXX compiler identification is GNU 8.1.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machine epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found -- Setting project paths -- Setting lookup paths for headers and libraries -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of mode_t -- Check size of mode_t - done -- Check size of pid_t -- Check size of pid_t - done -- Check size of size_t -- Check size of size_t - done -- Looking for 4 include files stdlib.h, ..., float.h -- Looking for 4 include files stdlib.h, ..., float.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/socket.h -- Looking for include file sys/socket.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file sys/un.h -- Looking for include file sys/un.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file netinet/in.h -- Looking for include file netinet/in.h - found -- Looking for include file arpa/inet.h -- Looking for include file arpa/inet.h - found -- Looking for include file netdb.h -- Looking for include file netdb.h - found -- Looking for include file rpc/rpc.h -- Looking for include file rpc/rpc.h - found -- Looking for getcwd -- Looking for getcwd - found -- Looking for O_NONBLOCK -- Looking for O_NONBLOCK - found -- With sources: base/maloc_base.c;psh/psh.c;psh/vcom.c;psh/vmp.c;psh/vmpi.c;vsh/vlex.c;vsh/vpars.c;vsh/vpup.c;vsh/vsh.c;vsh/vyacc.c;vsys/vio.c;vsys/viofb.c;vsys/vmem.c;vsys/vnm.c;vsys/vnmfb.c;vsys/vpred.c;vsys/vset.c;vsys/ziofb.c -- With external headers: base/maloc/maloc.h;base/maloc/maloc_base.h;psh/maloc/psh.h;psh/maloc/vcom.h;psh/maloc/vmp.h;psh/maloc/vmpi.h;vsh/maloc/vsh.h;vsys/maloc/vio.h;vsys/maloc/vmem.h;vsys/maloc/vnm.h;vsys/maloc/vset.h;vsys/maloc/vsys.h;vsys/maloc/vpred.h -- With internal headers: base/maloc_base_p.h;psh/psh_p.h;psh/vcom_p.h;psh/vmpi_p.h;psh/vmp_p.h;vsh/vpup.h;vsh/vsh_p.h;vsh/vyacc.h;vsys/vio_p.h;vsys/vmem_p.h;vsys/vnm_p.h;vsys/vpred_p.h;vsys/vset_p.h -- Inline functions enabled -- Verbose debugging mode enabled -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies m;stdc++;maloc;apbs_generic;apbs_pmgc -- Added apbs_mg -- Adding apbs_routines -- With source files routines.c -- With external header files -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_routines -- -- -- APBS Libraries: m;stdc++;maloc -- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines -- -- -pipe -O2 -fno-strict-aliasing -- Supplemental tools enabled -- Building mesh -- libraries: apbs_generic;apbs_mg;apbs_pmgc -- Building manip -- libraries: apbs_generic;apbs_mg;apbs_pmgc -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/apbs/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for apbs-1.5.102 /usr/local/bin/cmake -S/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs -B/construction/science/apbs/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/apbs/.build/CMakeFiles /construction/science/apbs/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/all --- /usr/bin/make -f externals/fetk/maloc/src/CMakeFiles/maloc.dir/build.make externals/fetk/maloc/src/CMakeFiles/maloc.dir/depend --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/depend --- cd /construction/science/apbs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src /construction/science/apbs/.build /construction/science/apbs/.build/externals/fetk/maloc/src /construction/science/apbs/.build/externals/fetk/maloc/src/CMakeFiles/maloc.dir/DependInfo.cmake Scanning dependencies of target maloc /usr/bin/make -f externals/fetk/maloc/src/CMakeFiles/maloc.dir/build.make externals/fetk/maloc/src/CMakeFiles/maloc.dir/build --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/base/maloc_base.c.o --- --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/psh.c.o --- --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vcom.c.o --- --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmp.c.o --- --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmpi.c.o --- --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/psh.c.o --- [ 3%] Building C object externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/psh.c.o --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmp.c.o --- [ 3%] Building C object externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmp.c.o --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/base/maloc_base.c.o --- [ 3%] Building C object externals/fetk/maloc/src/CMakeFiles/maloc.dir/base/maloc_base.c.o cd /construction/science/apbs/.build/externals/fetk/maloc/src && /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/maloc.dir/base/maloc_base.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base/maloc_base.c --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmp.c.o --- cd /construction/science/apbs/.build/externals/fetk/maloc/src && /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/maloc.dir/psh/vmp.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh/vmp.c --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/psh.c.o --- cd /construction/science/apbs/.build/externals/fetk/maloc/src && /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/maloc.dir/psh/psh.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh/psh.c --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vcom.c.o --- [ 4%] Building C object externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vcom.c.o cd /construction/science/apbs/.build/externals/fetk/maloc/src && /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/maloc.dir/psh/vcom.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh/vcom.c --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmpi.c.o --- [ 5%] Building C object externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmpi.c.o cd /construction/science/apbs/.build/externals/fetk/maloc/src && /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/maloc.dir/psh/vmpi.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh/vmpi.c --- externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vlex.c.o --- [ 6%] Building C object externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vlex.c.o cd /construction/science/apbs/.build/externals/fetk/maloc/src && /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh 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src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend --- src/generic/CMakeFiles/apbs_generic.dir/all --- /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend --- src/CMakeFiles/apbs_routines.dir/all --- --- src/CMakeFiles/apbs_routines.dir/depend --- cd /construction/science/apbs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src /construction/science/apbs/.build /construction/science/apbs/.build/src /construction/science/apbs/.build/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --- src/generic/CMakeFiles/apbs_generic.dir/all --- --- src/generic/CMakeFiles/apbs_generic.dir/depend --- cd /construction/science/apbs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic /construction/science/apbs/.build /construction/science/apbs/.build/src/generic /construction/science/apbs/.build/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/depend --- cd /construction/science/apbs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc /construction/science/apbs/.build /construction/science/apbs/.build/src/pmgc /construction/science/apbs/.build/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --- src/CMakeFiles/apbs_routines.dir/all --- Scanning dependencies of target apbs_routines /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- Scanning dependencies of target apbs_pmgc /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build --- src/CMakeFiles/apbs_routines.dir/all --- --- src/CMakeFiles/apbs_routines.dir/routines.c.o --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o --- [ 19%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o --- src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o --- [ 20%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o --- src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o --- cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/buildAd.c --- src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o --- cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/buildBd.c --- src/CMakeFiles/apbs_routines.dir/all --- [ 21%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o cd /construction/science/apbs/.build/src && /usr/bin/cc -Dapbs_routines_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_routines.dir/routines.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/routines.c --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o --- [ 22%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/buildGd.c --- src/generic/CMakeFiles/apbs_generic.dir/all --- Scanning dependencies of target apbs_generic /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build --- src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o --- --- src/generic/CMakeFiles/apbs_generic.dir/all --- [ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /construction/science/apbs/.build/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic/nosh.c --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- [ 24%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/buildPd.c --- src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o --- [ 25%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/cgd.c --- src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o --- [ 26%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/gsd.c --- src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o --- [ 27%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/matvecd.c --- src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o --- [ 28%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mgcsd.c --- src/generic/CMakeFiles/apbs_generic.dir/all --- --- src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o --- [ 29%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /construction/science/apbs/.build/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic/mgparm.c --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o --- [ 30%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mgdrvd.c --- src/generic/CMakeFiles/apbs_generic.dir/all --- --- src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o --- [ 31%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o cd /construction/science/apbs/.build/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic/femparm.c --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- --- src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o --- [ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /construction/science/apbs/.build/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base 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-I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic/vparam.c --- src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o --- [ 53%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /construction/science/apbs/.build/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic/vgreen.c --- src/CMakeFiles/apbs_routines.dir/all --- --- lib/libapbs_routines.so --- [ 54%] Linking C shared library ../lib/libapbs_routines.so cd /construction/science/apbs/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/apbs_routines.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -shared -Wl,-soname,libapbs_routines.so -o ../lib/libapbs_routines.so CMakeFiles/apbs_routines.dir/routines.c.o -L/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-z,origin,-rpath,/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -lm -lstdc++ /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so [ 55%] Built target apbs_routines --- src/generic/CMakeFiles/apbs_generic.dir/all --- --- lib/libapbs_generic.so --- [ 56%] Linking C shared library ../../lib/libapbs_generic.so cd /construction/science/apbs/.build/src/generic && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -shared -Wl,-soname,libapbs_generic.so -o ../../lib/libapbs_generic.so CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbamparm.c.o CMakeFiles/apbs_generic.dir/pbsamparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/bemparm.c.o CMakeFiles/apbs_generic.dir/geoflowparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o -L/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-z,origin,-rpath,/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -lm -lstdc++ /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so [ 57%] Built target apbs_generic --- src/pmgc/CMakeFiles/apbs_pmgc.dir/all --- --- lib/libapbs_pmgc.so --- [ 58%] Linking C shared library ../../lib/libapbs_pmgc.so cd /construction/science/apbs/.build/src/pmgc && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/apbs_pmgc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -O2 -fno-strict-aliasing -O2 -g 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/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so [ 59%] Built target apbs_pmgc --- src/mg/CMakeFiles/apbs_mg.dir/all --- /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend --- src/mg/CMakeFiles/apbs_mg.dir/depend --- cd /construction/science/apbs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/mg /construction/science/apbs/.build /construction/science/apbs/.build/src/mg /construction/science/apbs/.build/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake Scanning dependencies of target apbs_mg /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build --- src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o --- --- src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o --- --- src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o --- --- 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/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so [ 65%] Built target apbs_mg --- src/CMakeFiles/apbs.dir/all --- --- tools/mesh/CMakeFiles/value.dir/all --- --- tools/mesh/CMakeFiles/mgmesh.dir/all --- --- tools/mesh/CMakeFiles/dxmath.dir/all --- --- tools/mesh/CMakeFiles/mergedx.dir/all --- --- src/CMakeFiles/apbs.dir/all --- /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend --- tools/mesh/CMakeFiles/value.dir/all --- /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend --- tools/mesh/CMakeFiles/mergedx.dir/all --- /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend --- tools/mesh/CMakeFiles/mgmesh.dir/all --- /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend --- tools/mesh/CMakeFiles/dxmath.dir/all --- /usr/bin/make -f 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target mgmesh --- tools/mesh/CMakeFiles/dxmath.dir/all --- Scanning dependencies of target dxmath --- tools/mesh/CMakeFiles/mergedx.dir/all --- /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build --- tools/mesh/CMakeFiles/mgmesh.dir/all --- /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build --- tools/mesh/CMakeFiles/value.dir/all --- /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build --- tools/mesh/CMakeFiles/dxmath.dir/all --- /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build --- tools/mesh/CMakeFiles/mgmesh.dir/all --- --- tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o --- --- src/CMakeFiles/apbs.dir/all --- Scanning dependencies of target apbs --- tools/mesh/CMakeFiles/dxmath.dir/all --- --- tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o --- --- src/CMakeFiles/apbs.dir/all --- /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build --- tools/mesh/CMakeFiles/value.dir/all --- --- tools/mesh/CMakeFiles/value.dir/value.c.o --- --- tools/mesh/CMakeFiles/mergedx.dir/all --- --- tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o --- --- tools/mesh/CMakeFiles/mgmesh.dir/all --- [ 66%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o --- tools/mesh/CMakeFiles/dxmath.dir/all --- [ 67%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o --- tools/mesh/CMakeFiles/mgmesh.dir/all --- cd /construction/science/apbs/.build/tools/mesh && /usr/bin/cc -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh 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-I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG -o CMakeFiles/apbs.dir/main.c.o -c /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/main.c --- tools/mesh/CMakeFiles/value.dir/all --- --- tools/bin/value --- [ 71%] Linking C executable ../bin/value cd /construction/science/apbs/.build/tools/mesh && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 /usr/bin/cc -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG CMakeFiles/value.dir/value.c.o -o ../bin/value -L/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-z,origin,-rpath,/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib:/construction/science/apbs/.build/lib ../../lib/libapbs_mg.so ../../lib/libapbs_pmgc.so ../../lib/libapbs_generic.so -lm -lstdc++ 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-L/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-z,origin,-rpath,/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib:/construction/science/apbs/.build/lib ../../lib/libapbs_mg.so ../../lib/libapbs_pmgc.so ../../lib/libapbs_generic.so -lm -lstdc++ /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so [ 78%] Built target multivalue --- tools/mesh/CMakeFiles/benchmark.dir/all --- /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend --- tools/mesh/CMakeFiles/benchmark.dir/depend --- cd /construction/science/apbs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/mesh /construction/science/apbs/.build 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/usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/mesh /construction/science/apbs/.build /construction/science/apbs/.build/tools/mesh /construction/science/apbs/.build/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --- tools/mesh/CMakeFiles/similarity.dir/all --- --- tools/bin/similarity --- [ 86%] Linking C executable ../bin/similarity cd /construction/science/apbs/.build/tools/mesh && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 /usr/bin/cc -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity -L/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-z,origin,-rpath,/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib:/construction/science/apbs/.build/lib 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/construction/science/apbs/.build/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake Scanning dependencies of target dx2uhbd /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build --- tools/mesh/CMakeFiles/dx2mol.dir/all --- --- tools/bin/dx2mol --- [ 87%] Linking C executable ../bin/dx2mol cd /construction/science/apbs/.build/tools/mesh && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 --- tools/mesh/CMakeFiles/dx2uhbd.dir/all --- --- tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o --- --- tools/mesh/CMakeFiles/dx2mol.dir/all --- /usr/bin/cc -pipe -O2 -fno-strict-aliasing -O2 -g -DNDEBUG CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../bin/dx2mol -L/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-z,origin,-rpath,/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib:/construction/science/apbs/.build/lib ../../lib/libapbs_mg.so 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cmake_depends "Unix Makefiles" /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/manip /construction/science/apbs/.build /construction/science/apbs/.build/tools/manip /construction/science/apbs/.build/tools/manip/CMakeFiles/born.dir/DependInfo.cmake Scanning dependencies of target born /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build --- tools/manip/CMakeFiles/born.dir/born.c.o --- [ 93%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o cd /construction/science/apbs/.build/tools/manip && /usr/bin/cc -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh 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-Wl,-z,origin,-rpath,/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib:/construction/science/apbs/.build/lib ../../lib/libapbs_mg.so ../../lib/libapbs_pmgc.so ../../lib/libapbs_generic.so -lm -lstdc++ /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so [ 94%] Built target del2dx --- tools/manip/CMakeFiles/coulomb.dir/all --- /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend --- tools/manip/CMakeFiles/coulomb.dir/depend --- cd /construction/science/apbs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs /construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/manip /construction/science/apbs/.build /construction/science/apbs/.build/tools/manip /construction/science/apbs/.build/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake Scanning dependencies of target coulomb /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build --- tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o --- --- tools/mesh/CMakeFiles/tensor2dx.dir/all --- --- tools/bin/tensor2dx --- --- tools/manip/CMakeFiles/coulomb.dir/all --- [ 95%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o cd /construction/science/apbs/.build/tools/manip && /usr/bin/cc -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/construction/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -I/construction/science/apbs/.build/src 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