=> Building biology/xmolwt Started : Wednesday, 5 DEC 2018 at 11:31:17 UTC Platform: 5.5-DEVELOPMENT DragonFly v5.5.0.25.g9bb66-DEVELOPMENT #33: Mon Dec 3 06:33:52 PST 2018 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for xmolwt-0.7_7: DOCS=on: Build and/or install documentation GTK2=off: GTK+ 2 GUI toolkit support ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- MAKE=gmake GLIB_CONFIG="/usr/local/bin/glib-config" GTK_CONFIG="/usr/local/bin/gtk-config" XDG_DATA_HOME=/construction/biology/xmolwt XDG_CONFIG_HOME=/construction/biology/xmolwt HOME=/construction/biology/xmolwt TMPDIR="/tmp" PATH=/construction/biology/xmolwt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- GTKCONFIG="/usr/local/bin/gtk-config" GLIB_CONFIG="/usr/local/bin/glib-config" GTK_CONFIG="/usr/local/bin/gtk-config" XDG_DATA_HOME=/construction/biology/xmolwt XDG_CONFIG_HOME=/construction/biology/xmolwt HOME=/construction/biology/xmolwt TMPDIR="/tmp" PATH=/construction/biology/xmolwt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing -std=gnu89 " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/xmolwt/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/xmolwt" EXAMPLESDIR="share/examples/xmolwt" DATADIR="share/xmolwt" WWWDIR="www/xmolwt" ETCDIR="etc/xmolwt" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/xmolwt DOCSDIR=/usr/local/share/doc/xmolwt EXAMPLESDIR=/usr/local/share/examples/xmolwt WWWDIR=/usr/local/www/xmolwt ETCDIR=/usr/local/etc/xmolwt -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.2 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> NOTICE: The xmolwt port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses obsolete glib12. It is scheduled to be removed on or after 2018-12-20. -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> xmolwt-0.7_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz Installing pkg-1.10.5_5... Extracting pkg-1.10.5_5: .......... done ===> xmolwt-0.7_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of xmolwt-0.7_7 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> NOTICE: The xmolwt port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses obsolete glib12. It is scheduled to be removed on or after 2018-12-20. ===> Fetching all distfiles required by xmolwt-0.7_7 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> NOTICE: The xmolwt port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses obsolete glib12. It is scheduled to be removed on or after 2018-12-20. ===> Fetching all distfiles required by xmolwt-0.7_7 for building => SHA256 Checksum OK for xmolwt-0.7.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> NOTICE: The xmolwt port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses obsolete glib12. It is scheduled to be removed on or after 2018-12-20. ===> Fetching all distfiles required by xmolwt-0.7_7 for building ===> Extracting for xmolwt-0.7_7 => SHA256 Checksum OK for xmolwt-0.7.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for xmolwt-0.7_7 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> xmolwt-0.7_7 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... `-- Installing gettext-runtime-0.19.8.1_2... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gettext-runtime-0.19.8.1_2: .......... done Extracting gmake-4.2.1_3: .......... done ===> xmolwt-0.7_7 depends on executable: gmake - found ===> Returning to build of xmolwt-0.7_7 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> xmolwt-0.7_7 depends on shared library: libglib.so - not found ===> Installing existing package /packages/All/glib12-1.2.10_16.txz Installing glib12-1.2.10_16... Extracting glib12-1.2.10_16: .......... done Message from glib12-1.2.10_16: ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Obsolete. It is scheduled to be removed on or after 2018-12-20. ===> xmolwt-0.7_7 depends on shared library: libglib.so - found (/usr/local/lib/libglib.so) ===> Returning to build of xmolwt-0.7_7 ===> xmolwt-0.7_7 depends on shared library: libgtk.so - not found ===> Installing existing package /packages/All/gtk12-1.2.10_28.txz Installing gtk12-1.2.10_28... `-- Installing libICE-1.0.9_3,1... `-- Extracting libICE-1.0.9_3,1: .......... done `-- Installing libSM-1.2.3,1... `-- Extracting libSM-1.2.3,1: .......... done `-- Installing libX11-1.6.6_1,1... | `-- Installing libXau-1.0.8_5... | `-- Extracting libXau-1.0.8_5: .......... done | `-- Installing libXdmcp-1.1.2_2... | | `-- Installing xorgproto-2018.4... | | `-- Extracting xorgproto-2018.4: .......... done | `-- Extracting libXdmcp-1.1.2_2: ......... done | `-- Installing libxcb-1.13.1... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: .... done | | `-- Installing libxml2-2.9.7... | | `-- Extracting libxml2-2.9.7: .......... done | `-- Extracting libxcb-1.13.1: .......... done `-- Extracting libX11-1.6.6_1,1: .......... done `-- Installing libXext-1.3.3_3,1... `-- Extracting libXext-1.3.3_3,1: .......... done `-- Installing libXi-1.7.9_2,1... | `-- Installing libXfixes-5.0.3_2... | `-- Extracting libXfixes-5.0.3_2: .......... done `-- Extracting libXi-1.7.9_2,1: .......... done Extracting gtk12-1.2.10_28: .......... done Message from gtk12-1.2.10_28: ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses obsolete glib12. It is scheduled to be removed on or after 2018-12-20. ===> xmolwt-0.7_7 depends on shared library: libgtk.so - found (/usr/local/lib/libgtk.so) ===> Returning to build of xmolwt-0.7_7 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for xmolwt-0.7_7 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for xmolwt-0.7_7 gmake[1]: Entering directory '/construction/biology/xmolwt/xmolwt-0.7' cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` molwt.c -c cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` usage.c -c cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` element.c -c cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` reduce.c -c cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` count.c -c count.c: In function 'count': count.c:14:30: warning: unused variable 'i0' [-Wunused-variable] int nbraket=0, i, j, n, k, i0; ^~ cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` calculate.c -c cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` initwidget.c -c cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` allowcase.c -c cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` inputformula.c -c cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` addtolist.c -c cc -pipe -O2 -fno-strict-aliasing -std=gnu89 -Wall -DGTK `/usr/local/bin/gtk-config --cflags` atomicnumber.c -c cc `/usr/local/bin/gtk-config --libs` molwt.o usage.o element.o reduce.o count.o calculate.o initwidget.o allowcase.o inputformula.o addtolist.o atomicnumber.o -o gmolwt gmake[1]: Leaving directory '/construction/biology/xmolwt/xmolwt-0.7' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for xmolwt-0.7_7 ===> Generating temporary packing list install -s -m 555 /construction/biology/xmolwt/xmolwt-0.7/gmolwt /construction/biology/xmolwt/stage/usr/local/bin ln -sf gmolwt /construction/biology/xmolwt/stage/usr/local/bin/molwt (cd /construction/biology/xmolwt/xmolwt-0.7 && install -m 0644 Howtouse.* Readme Xmolwt dot.gtkrc *.html *.gif /construction/biology/xmolwt/stage/usr/local/share/doc/xmolwt) ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for xmolwt-0.7_7 file sizes/checksums [10]: . done packing files [10]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 5 DEC 2018 at 11:31:31 UTC Duration: 00:00:14