=> Building biology/py-xenaPython@py36 Started : Sunday, 7 JUL 2019 at 04:46:46 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/biology/py-xenaPython XDG_CONFIG_HOME=/construction/biology/py-xenaPython HOME=/construction/biology/py-xenaPython TMPDIR="/tmp" PATH=/construction/biology/py-xenaPython/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-xenaPython XDG_CONFIG_HOME=/construction/biology/py-xenaPython HOME=/construction/biology/py-xenaPython TMPDIR="/tmp" PATH=/construction/biology/py-xenaPython/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/py-xenaPython/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/xenaPython" EXAMPLESDIR="share/examples/xenaPython" DATADIR="share/xenaPython" WWWDIR="www/xenaPython" ETCDIR="etc/xenaPython" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/xenaPython DOCSDIR=/usr/local/share/doc/xenaPython EXAMPLESDIR=/usr/local/share/examples/xenaPython WWWDIR=/usr/local/www/xenaPython ETCDIR=/usr/local/etc/xenaPython -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License APACHE20 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-xenaPython-1.0.10 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> py36-xenaPython-1.0.10 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-xenaPython-1.0.10 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py36-xenaPython-1.0.10 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py36-xenaPython-1.0.10 for building => SHA256 Checksum OK for xenaPython-1.0.10.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py36-xenaPython-1.0.10 for building ===> Extracting for py36-xenaPython-1.0.10 => SHA256 Checksum OK for xenaPython-1.0.10.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-xenaPython-1.0.10 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-xenaPython-1.0.10 depends on package: py36-setuptools>0 - not found ===> Installing existing package /packages/All/py36-setuptools-41.0.0.txz Installing py36-setuptools-41.0.0... `-- Installing python36-3.6.8_2... | `-- Installing expat-2.2.6_1... | `-- Extracting expat-2.2.6_1: .......... done | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Installing libffi-3.2.1_3... | `-- Extracting libffi-3.2.1_3: .......... done | `-- Installing libressl-2.9.2... | `-- Extracting libressl-2.9.2: .......... done | `-- Installing ncurses-6.1.20190525... | `-- Extracting ncurses-6.1.20190525: .......... done | `-- Installing readline-8.0.0... | `-- Extracting readline-8.0.0: .......... done `-- Extracting python36-3.6.8_2: .......... done Extracting py36-setuptools-41.0.0: .......... done Message from python36-3.6.8_2: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== ===> py36-xenaPython-1.0.10 depends on package: py36-setuptools>0 - found ===> Returning to build of py36-xenaPython-1.0.10 ===> py36-xenaPython-1.0.10 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-xenaPython-1.0.10 ['xenaPython'] running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-xenaPython-1.0.10 ['xenaPython'] running build running build_py creating build creating build/lib creating build/lib/xenaPython copying xenaPython/xenaAPI.py -> build/lib/xenaPython copying xenaPython/example.py -> build/lib/xenaPython copying xenaPython/__init__.py -> build/lib/xenaPython copying xenaPython/xenaQuery.py -> build/lib/xenaPython running egg_info writing xenaPython.egg-info/PKG-INFO writing dependency_links to xenaPython.egg-info/dependency_links.txt writing top-level names to xenaPython.egg-info/top_level.txt reading manifest file 'xenaPython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'xenaPython.egg-info/SOURCES.txt' creating build/lib/xenaPython/queries copying xenaPython/queries/allCohorts.xq -> build/lib/xenaPython/queries copying xenaPython/queries/allDatasets.xq -> build/lib/xenaPython/queries copying xenaPython/queries/allDatasetsN.xq -> build/lib/xenaPython/queries copying xenaPython/queries/allFieldMetadata.xq -> build/lib/xenaPython/queries copying xenaPython/queries/cohortSamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/cohortSummary.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetFetch.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetField.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetFieldExamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetFieldN.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetGeneProbeAvg.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetGeneProbesValues.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetList.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetMetadata.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetProbeSignature.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetProbeValues.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetSamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetSamplesNDenseMatrix.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetsNullRows.xq -> build/lib/xenaPython/queries copying xenaPython/queries/featureList.xq -> build/lib/xenaPython/queries copying xenaPython/queries/fieldCodes.xq -> build/lib/xenaPython/queries copying xenaPython/queries/fieldMetadata.xq -> build/lib/xenaPython/queries copying xenaPython/queries/geneTranscripts.xq -> build/lib/xenaPython/queries copying xenaPython/queries/matchFields.xq -> build/lib/xenaPython/queries copying xenaPython/queries/probeCount.xq -> build/lib/xenaPython/queries copying xenaPython/queries/probemapList.xq -> build/lib/xenaPython/queries copying xenaPython/queries/refGeneExons.xq -> build/lib/xenaPython/queries copying xenaPython/queries/refGenePosition.xq -> build/lib/xenaPython/queries copying xenaPython/queries/refGeneRange.xq -> build/lib/xenaPython/queries copying xenaPython/queries/segmentDataExamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/segmentedDataRange.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseData.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataExamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataMatchField.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataMatchFieldSlow.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataMatchPartialField.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataRange.xq -> build/lib/xenaPython/queries copying xenaPython/queries/transcriptExpression.xq -> build/lib/xenaPython/queries -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-xenaPython-1.0.10 depends on package: py36-setuptools>0 - found ===> py36-xenaPython-1.0.10 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-xenaPython-1.0.10 ===> Generating temporary packing list ['xenaPython'] running install running build running build_py running egg_info writing xenaPython.egg-info/PKG-INFO writing dependency_links to xenaPython.egg-info/dependency_links.txt writing top-level names to xenaPython.egg-info/top_level.txt reading manifest file 'xenaPython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'xenaPython.egg-info/SOURCES.txt' running install_lib creating /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6 creating /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages creating /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython copying build/lib/xenaPython/xenaQuery.py -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython creating /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/refGeneExons.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataExamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataMatchFieldSlow.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/allCohorts.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetSamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataMatchPartialField.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/refGenePosition.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/cohortSummary.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/transcriptExpression.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/segmentedDataRange.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/matchFields.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetSamplesNDenseMatrix.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/refGeneRange.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetProbeValues.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetFetch.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetFieldN.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/cohortSamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/allDatasets.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/probeCount.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseData.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/geneTranscripts.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetMetadata.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/fieldCodes.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/fieldMetadata.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/allFieldMetadata.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetGeneProbesValues.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/segmentDataExamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetGeneProbeAvg.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetField.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataMatchField.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetsNullRows.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetProbeSignature.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetList.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/allDatasetsN.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/featureList.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/probemapList.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataRange.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetFieldExamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/queries copying build/lib/xenaPython/example.py -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython copying build/lib/xenaPython/__init__.py -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython copying build/lib/xenaPython/xenaAPI.py -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython byte-compiling /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/xenaQuery.py to xenaQuery.cpython-36.pyc byte-compiling /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/example.py to example.cpython-36.pyc byte-compiling /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython/xenaAPI.py to xenaAPI.cpython-36.pyc writing byte-compilation script '/tmp/tmpku7bjjzl.py' /usr/local/bin/python3.6 /tmp/tmpku7bjjzl.py removing /tmp/tmpku7bjjzl.py running install_egg_info Copying xenaPython.egg-info to /construction/biology/py-xenaPython/stage/usr/local/lib/python3.6/site-packages/xenaPython-1.0.10-py3.6.egg-info running install_scripts writing list of installed files to '/construction/biology/py-xenaPython/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-xenaPython-1.0.10 file sizes/checksums [57]: . done packing files [57]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 7 JUL 2019 at 04:46:58 UTC Duration: 00:00:11