=> Building biology/p5-Bio-Coordinate Started : Sunday, 7 JUL 2019 at 16:38:27 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/p5-Bio-Coordinate XDG_CONFIG_HOME=/construction/biology/p5-Bio-Coordinate HOME=/construction/biology/p5-Bio-Coordinate TMPDIR="/tmp" PATH=/construction/biology/p5-Bio-Coordinate/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- INSTALLDIRS="site" CC="cc" CCFLAGS="-pipe -O2 -fno-strict-aliasing " LD="cc" PREFIX="/usr/local" INSTALLPRIVLIB="/usr/local/lib" INSTALLARCHLIB="/usr/local/lib" -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/p5-Bio-Coordinate XDG_CONFIG_HOME=/construction/biology/p5-Bio-Coordinate HOME=/construction/biology/p5-Bio-Coordinate TMPDIR="/tmp" PATH=/construction/biology/p5-Bio-Coordinate/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/p5-Bio-Coordinate/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.2 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 PROFILE="@comment " DOCSDIR="share/doc/Bio-Coordinate" EXAMPLESDIR="share/examples/Bio-Coordinate" DATADIR="share/Bio-Coordinate" WWWDIR="www/Bio-Coordinate" ETCDIR="etc/Bio-Coordinate" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/Bio-Coordinate DOCSDIR=/usr/local/share/doc/Bio-Coordinate EXAMPLESDIR=/usr/local/share/examples/Bio-Coordinate WWWDIR=/usr/local/www/Bio-Coordinate ETCDIR=/usr/local/etc/Bio-Coordinate -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> p5-Bio-Coordinate-1.007001 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> p5-Bio-Coordinate-1.007001 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of p5-Bio-Coordinate-1.007001 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-Bio-Coordinate-1.007001 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-Bio-Coordinate-1.007001 for building => SHA256 Checksum OK for Bio-Coordinate-1.007001.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-Bio-Coordinate-1.007001 for building ===> Extracting for p5-Bio-Coordinate-1.007001 => SHA256 Checksum OK for Bio-Coordinate-1.007001.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for p5-Bio-Coordinate-1.007001 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> p5-Bio-Coordinate-1.007001 depends on package: p5-BioPerl>=1.007000 - not found ===> Installing existing package /packages/All/p5-BioPerl-1.007005.txz Installing p5-BioPerl-1.007005... `-- Installing p5-DBI-1.642... | `-- Installing perl5-5.28.2... | `-- Extracting perl5-5.28.2: .......... done `-- Extracting p5-DBI-1.642: .......... done `-- Installing p5-Data-Stag-0.14_2... | `-- Installing p5-IO-String-1.08_1... | `-- Extracting p5-IO-String-1.08_1: ....... done `-- Extracting p5-Data-Stag-0.14_2: .......... done `-- Installing p5-Error-0.17027... `-- Extracting p5-Error-0.17027: ......... done `-- Installing p5-GD-2.71... | `-- Installing libgd-2.2.5_1,1... | | `-- Installing fontconfig-2.12.6,1... | | `-- Installing expat-2.2.6_1... | | `-- Extracting expat-2.2.6_1: .......... done | | `-- Installing freetype2-2.10.0... | | `-- Extracting freetype2-2.10.0: .......... done | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing jpeg-turbo-2.0.2... | | `-- Extracting jpeg-turbo-2.0.2: .......... done | | `-- Installing png-1.6.37... | | `-- Extracting png-1.6.37: .......... done | | `-- Installing tiff-4.0.10_1... | | `-- Installing jbigkit-2.1_1... | | `-- Extracting jbigkit-2.1_1: .......... done | | `-- Extracting tiff-4.0.10_1: .......... done | | `-- Installing webp-1.0.2... | | `-- Installing giflib-5.1.9... | | `-- Extracting giflib-5.1.9: .......... done | | `-- Extracting webp-1.0.2: .......... done | `-- Extracting libgd-2.2.5_1,1: .......... done `-- Extracting p5-GD-2.71: .......... done `-- 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p5-XML-DOM-XPath-0.14_1: ....... done `-- Installing p5-XML-LibXML-2.0134,1... | `-- Installing libxml2-2.9.9... | `-- Extracting libxml2-2.9.9: .......... done | `-- Installing p5-XML-NamespaceSupport-1.12... | `-- Extracting p5-XML-NamespaceSupport-1.12: ....... done | `-- Installing p5-XML-SAX-1.02... | | `-- Installing p5-XML-SAX-Base-1.09... | | `-- Extracting p5-XML-SAX-Base-1.09: .......... done | `-- Extracting p5-XML-SAX-1.02: .......... done could not find ParserDetails.ini in /usr/local/lib/perl5/site_perl/XML/SAX `-- Extracting p5-XML-LibXML-2.0134,1: .......... done `-- Installing p5-XML-SAX-Writer-0.57... | `-- Installing p5-XML-Filter-BufferText-1.01_1... | `-- Extracting p5-XML-Filter-BufferText-1.01_1: ....... done `-- Extracting p5-XML-SAX-Writer-0.57: ......... done `-- Installing p5-XML-Twig-3.52... | `-- Installing p5-HTML-Tree-5.07... | `-- Extracting p5-HTML-Tree-5.07: .......... done | `-- Installing p5-Text-Iconv-1.7_3... | | `-- Installing libiconv-1.14_11... | | `-- Extracting libiconv-1.14_11: .......... done | `-- Extracting p5-Text-Iconv-1.7_3: ......... done | `-- Installing p5-Tie-IxHash-1.23_1... | `-- Extracting p5-Tie-IxHash-1.23_1: ....... done | `-- Installing p5-XML-XPath-1.44... | `-- Extracting p5-XML-XPath-1.44: .......... done `-- Extracting p5-XML-Twig-3.52: .......... done `-- Installing p5-XML-Writer-0.625_1... `-- Extracting p5-XML-Writer-0.625_1: ...... done `-- Installing p5-YAML-1.29... `-- Extracting p5-YAML-1.29: .......... done Extracting p5-BioPerl-1.007005: .......... done Message from perl5-5.28.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from freetype2-2.10.0: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). ===> p5-Bio-Coordinate-1.007001 depends on package: p5-BioPerl>=1.007000 - found ===> Returning to build of p5-Bio-Coordinate-1.007001 ===> p5-Bio-Coordinate-1.007001 depends on package: perl5>=5.28.r1<5.29 - found ===> p5-Bio-Coordinate-1.007001 depends on package: perl5>=5.28.r1<5.29 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for p5-Bio-Coordinate-1.007001 Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Coordinate Writing MYMETA.yml and MYMETA.json -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for p5-Bio-Coordinate-1.007001 --- blib/lib/Bio/.exists --- --- blib/arch/.exists --- --- blib/lib/auto/Bio/Coordinate/.exists --- --- blib/arch/auto/Bio/Coordinate/.exists --- --- blib/bin/.exists --- --- blib/script/.exists --- --- blib/man1/.exists --- --- blib/man3/.exists --- --- config --- --- subdirs --- --- dynamic --- --- pm_to_blib --- cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm cp lib/Bio/Coordinate/Pair.pm blib/lib/Bio/Coordinate/Pair.pm cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm cp lib/Bio/Coordinate.pm blib/lib/Bio/Coordinate.pm cp lib/Bio/Coordinate/Result.pm blib/lib/Bio/Coordinate/Result.pm cp lib/Bio/Coordinate/Utils.pm blib/lib/Bio/Coordinate/Utils.pm cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm cp lib/Bio/Coordinate/Graph.pm blib/lib/Bio/Coordinate/Graph.pm cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm --- blibdirs --- --- config --- --- dynamic --- --- linkext --- --- pure_all --- --- manifypods --- Manifying 13 pod documents --- all --- -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> p5-Bio-Coordinate-1.007001 depends on package: p5-BioPerl>=1.007000 - found ===> p5-Bio-Coordinate-1.007001 depends on package: perl5>=5.28.r1<5.29 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for p5-Bio-Coordinate-1.007001 ===> Generating temporary packing list Manifying 13 pod documents Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/MapperI.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/GeneMapper.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Result.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/ExtrapolatingPair.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Utils.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/ResultI.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Chain.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Pair.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Collection.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Graph.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Result/Match.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/Bio/Coordinate/Result/Gap.pm Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Graph.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Pair.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Result::Match.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::ExtrapolatingPair.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Chain.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Result::Gap.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Collection.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::ResultI.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Utils.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::GeneMapper.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::MapperI.3 Installing /construction/biology/p5-Bio-Coordinate/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Coordinate::Result.3 ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for p5-Bio-Coordinate-1.007001 file sizes/checksums [31]: . done packing files [31]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 7 JUL 2019 at 16:38:50 UTC Duration: 00:00:23