=> Building biology/ncbi-blast+ Started : Sunday, 7 JUL 2019 at 04:26:35 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/biology/ncbi-blast+ XDG_CONFIG_HOME=/construction/biology/ncbi-blast+ HOME=/construction/biology/ncbi-blast+ TMPDIR="/tmp" PATH=/construction/biology/ncbi-blast+/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- AR="ar cr" --without-boost --libdir=/usr/local/lib/ncbi-tools++ --with-lmdb=/usr/local --with-lzo=/usr/local --with-sqlite3=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/ncbi-blast+ XDG_CONFIG_HOME=/construction/biology/ncbi-blast+ HOME=/construction/biology/ncbi-blast+ TMPDIR="/tmp" PATH=/construction/biology/ncbi-blast+/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="gcc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="g++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/ncbi-blast+/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.2 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 PROFILE="@comment " DOCSDIR="share/doc/ncbi-blast+" EXAMPLESDIR="share/examples/ncbi-blast+" DATADIR="share/ncbi-blast+" WWWDIR="www/ncbi-blast+" ETCDIR="etc/ncbi-blast+" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-blast+ DOCSDIR=/usr/local/share/doc/ncbi-blast+ EXAMPLESDIR=/usr/local/share/examples/ncbi-blast+ WWWDIR=/usr/local/www/ncbi-blast+ ETCDIR=/usr/local/etc/ncbi-blast+ -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License PD accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> ncbi-blast+-2.9.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> ncbi-blast+-2.9.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.9.0 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.9.0 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.9.0 for building => SHA256 Checksum OK for ncbi-blast-2.9.0+-src.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.9.0 for building ===> Extracting for ncbi-blast+-2.9.0 ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.9.0 for building => SHA256 Checksum OK for ncbi-blast-2.9.0+-src.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for ncbi-blast+-2.9.0 ===> Applying ports patches for ncbi-blast+-2.9.0 ===> Applying dragonfly patches for ncbi-blast+-2.9.0 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> ncbi-blast+-2.9.0 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... `-- Installing gettext-runtime-0.20.1... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gettext-runtime-0.20.1: .......... done Extracting gmake-4.2.1_3: .......... done ===> ncbi-blast+-2.9.0 depends on executable: gmake - found ===> Returning to build of ncbi-blast+-2.9.0 ===> ncbi-blast+-2.9.0 depends on file: /usr/local/bin/python3.6 - not found ===> Installing existing package /packages/All/python36-3.6.8_2.txz Installing python36-3.6.8_2... `-- Installing expat-2.2.6_1... `-- Extracting expat-2.2.6_1: .......... done `-- Installing libffi-3.2.1_3... `-- Extracting libffi-3.2.1_3: .......... done `-- Installing libressl-2.9.2... `-- Extracting libressl-2.9.2: .......... done `-- Installing ncurses-6.1.20190525... `-- Extracting ncurses-6.1.20190525: .......... done `-- Installing readline-8.0.0... `-- Extracting readline-8.0.0: .......... done Extracting python36-3.6.8_2: .......... done Message from python36-3.6.8_2: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== ===> ncbi-blast+-2.9.0 depends on file: /usr/local/bin/python3.6 - found ===> Returning to build of ncbi-blast+-2.9.0 ===> ncbi-blast+-2.9.0 depends on package: perl5>=5.28.r1<5.29 - not found ===> Installing existing package /packages/All/perl5-5.28.2.txz Installing perl5-5.28.2... Extracting perl5-5.28.2: .......... done Message from perl5-5.28.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> ncbi-blast+-2.9.0 depends on package: perl5>=5.28.r1<5.29 - found ===> Returning to build of ncbi-blast+-2.9.0 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> ncbi-blast+-2.9.0 depends on shared library: libpcre.so - not found ===> Installing existing package /packages/All/pcre-8.43_1.txz Installing pcre-8.43_1... Extracting pcre-8.43_1: .......... done ===> ncbi-blast+-2.9.0 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so) ===> Returning to build of ncbi-blast+-2.9.0 ===> ncbi-blast+-2.9.0 depends on shared library: liblmdb.so - not found ===> Installing existing package /packages/All/lmdb-0.9.23,1.txz Installing lmdb-0.9.23,1... Extracting lmdb-0.9.23,1: .......... done ===> ncbi-blast+-2.9.0 depends on shared library: liblmdb.so - found (/usr/local/lib/liblmdb.so) ===> Returning to build of ncbi-blast+-2.9.0 ===> ncbi-blast+-2.9.0 depends on shared library: liblzo2.so - not found ===> Installing existing package /packages/All/lzo2-2.10_1.txz Installing lzo2-2.10_1... Extracting lzo2-2.10_1: .......... done ===> ncbi-blast+-2.9.0 depends on shared library: liblzo2.so - found (/usr/local/lib/liblzo2.so) ===> Returning to build of ncbi-blast+-2.9.0 ===> ncbi-blast+-2.9.0 depends on shared library: libgnutls.so - not found ===> Installing existing package /packages/All/gnutls-3.6.8.txz Installing gnutls-3.6.8... `-- Installing ca_root_nss-3.44... `-- Extracting ca_root_nss-3.44: ........ done `-- Installing gmp-6.1.2_1... `-- Extracting gmp-6.1.2_1: .......... done `-- Installing libidn2-2.2.0... | `-- Installing libunistring-0.9.10_1... | `-- Extracting libunistring-0.9.10_1: .......... done `-- Extracting libidn2-2.2.0: .......... done `-- Installing libtasn1-4.13_1... `-- Extracting libtasn1-4.13_1: .......... done `-- Installing nettle-3.4.1_1... `-- Extracting nettle-3.4.1_1: .......... done `-- Installing p11-kit-0.23.15... `-- Extracting p11-kit-0.23.15: .......... done `-- Installing trousers-0.3.14_2... | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. `-- Extracting trousers-0.3.14_2: .......... done Extracting gnutls-3.6.8: .......... done Message from ca_root_nss-3.44: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===> ncbi-blast+-2.9.0 depends on shared library: libgnutls.so - found (/usr/local/lib/libgnutls.so) ===> Returning to build of ncbi-blast+-2.9.0 ===> ncbi-blast+-2.9.0 depends on shared library: libtspi.so - found (/usr/local/lib/libtspi.so) ===> ncbi-blast+-2.9.0 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so) ===> ncbi-blast+-2.9.0 depends on shared library: libidn2.so - found (/usr/local/lib/libidn2.so) ===> ncbi-blast+-2.9.0 depends on shared library: libnettle.so - found (/usr/local/lib/libnettle.so) ===> ncbi-blast+-2.9.0 depends on shared library: libhogweed.so - found (/usr/local/lib/libhogweed.so) ===> ncbi-blast+-2.9.0 depends on shared library: libtasn1.so - found (/usr/local/lib/libtasn1.so) ===> ncbi-blast+-2.9.0 depends on shared library: libp11-kit.so - found (/usr/local/lib/libp11-kit.so) ===> ncbi-blast+-2.9.0 depends on shared library: libgcrypt.so - not found ===> Installing existing package /packages/All/libgcrypt-1.8.4_1.txz Installing libgcrypt-1.8.4_1... `-- Installing libgpg-error-1.36... `-- Extracting libgpg-error-1.36: .......... done Extracting libgcrypt-1.8.4_1: .......... done ===> ncbi-blast+-2.9.0 depends on shared library: libgcrypt.so - found (/usr/local/lib/libgcrypt.so) ===> Returning to build of ncbi-blast+-2.9.0 ===> ncbi-blast+-2.9.0 depends on shared library: libgpg-error.so - found (/usr/local/lib/libgpg-error.so) ===> ncbi-blast+-2.9.0 depends on shared library: libsqlite3.so - not found ===> Installing existing package /packages/All/sqlite3-3.28.0.txz Installing sqlite3-3.28.0... 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(cached) yes checking for getnameinfo... (cached) yes checking for freehostent... yes checking for gethostent_r... yes checking for getipnodebyaddr... yes checking for getipnodebyname... yes checking for inet_ntop... (cached) yes checking for socketpair... (cached) yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... -lrpcsvc checking for library containing setkey... no checking for library containing dlopen... none required checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for clock_gettime... (cached) yes checking for nanosleep... yes checking for pthread_cond_timedwait_relative_np... no checking for pthread_condattr_setclock... yes checking for sched_yield... (cached) yes checking whether CLOCK_MONOTONIC is declared... yes checking whether CLOCK_SGI_CYCLE is declared... no checking whether CLOCK_REALTIME is declared... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libdw... no checking for libbackward... no checking for libz... yes checking for libbz2... yes checking for liblzo2 in /usr/local... yes checking for libpcre in /usr/local... yes configure: using local mbedTLS copy in connect/mbedtls checking for libgmp... no checking for libgcrypt-config... (cached) no checking for libhogweed... no checking for libgnutls-config... (cached) no checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... /usr/local/bin/python3.6 checking for usable Python 3.6 libraries... yes checking for python2.5... no checking for python2.6... no checking for python2.7... no checking for python3... no checking for perl... (cached) /usr/local/bin/perl checking for usable Perl libraries... yes checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for wx-config... no checking for wxWidgets... no checking for FastCGI libraries... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories... no checking for ORBacus... no checking for ICU... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for libexslt... no checking for Xerces-C++... no checking for Xalan-C++... no checking for Zorba... no checking for libsqlite3 in /usr/local... yes checking sqlite3async.h usability... no checking sqlite3async.h presence... no checking for sqlite3async.h... no checking for sqlite3_unlock_notify... yes 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Accelerate/Accelerate.h usability... no checking Accelerate/Accelerate.h presence... no checking for Accelerate/Accelerate.h... no checking for liblapack... no checking for liblmdb in /usr/local... yes checking for libuv... no checking for libssh2... no checking for libcassandra... no checking for libnghttp2... no checking for libh2o... no checking for libxlsxwriter... no checking for libprotobuf... no checking for the Guideline Support Library... no checking for libaws-cpp-sdk-s3... no configure: looking for configurables below /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++... configure: ...done configure: updating cache config.cache configure: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/config.status config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/Makefile config.status: creating 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/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dustmasker/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/bitset/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdbxx/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/./Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc/common/ncbi_build_ver.h config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc/ncbiconf_unix.h config.status: executing default commands /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib/ncbicfg.c is updated /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc/common/ncbi_build_ver.h is updated gmake[2]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/helpers TMPL=run_with_lock -kw all gmake[3]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/helpers' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/helpers/run_with_lock.c. gcc -c -g -O2 /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc run_with_lock.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lm -lpthread -o run_with_lock strip run_with_lock /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f run_with_lock /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/run_with_lock gmake[3]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[2]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/helpers' Prebuilt project_tree_builder not found =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O LIBRARIES: build as static by default FEATURES: GCC MT LFS DLL unix WinMain PACKAGES: enabled: Iconv Z BZ2 LZO PCRE MBEDTLS PYTHON PERL SQLITE3 MAGIC LMDB disabled: UUID FUSE LIBUNWIND LIBDW BACKWARD_CPP LocalZ LocalBZ2 LocalPCRE GMP GCRYPT NETTLE GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON25 PYTHON26 PYTHON27 PYTHON3 Boost.Chrono Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM GL2PS FreeType FTGL MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 GMOCK LAPACK LocalLMDB LIBUV LIBSSH2 CASSANDRA NGHTTP2 H2O LIBXLSXWRITER PROTOBUF GRPC MSGSL AWS_SDK PROJECTS: enabled: cgi serial objects dbapi app algo disabled: local_lbsm connext ncbi_crypt bdb ctools gui gbench Tools / flags / paths: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.mk Configuration header: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc/ncbiconf_unix.h To build everything: cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build && /usr/local/bin/gmake all_r or simply run /usr/local/bin/gmake in the current directory ******* CONFIGURATION SUCCESSFUL ******* -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for ncbi-blast+-2.9.0 gmake[2]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++' if test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build && gmake -f Makefile.flat; \ elif test -s ""; then \ cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build && gmake -w -j5 --jobserver-auth=3,4 all_p; \ else \ cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build && gmake -w -j5 --jobserver-auth=3,4 all_r; \ fi gmake[3]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[3]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/ctools/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/sra/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/gui/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/sample/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/internal/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/sample/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/sample/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/internal/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/internal/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/gui/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/gui/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/sra/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/sra/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/ctools/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/ctools/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT sra/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT gui/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT sample/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT internal/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ctools/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/sample/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/sra/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/ctools/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/gui/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/internal/Makefile /usr/local/bin/gmake -C corelib -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake[6] (Makefile.precompile): Nothing to be done for `all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib TMPL=corelib -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib TMPL=test_mt -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: *** No rule to make target '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib TMPL=corelib -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_system.cpp: In function 'bool ncbi::SetMemoryLimitHard(size_t, ncbi::TLimitsPrintHandler, ncbi::TLimitsPrintParameter)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_system.cpp:386:25: warning: comparison of integer expressions of different signedness: 'rlim_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rl.rlim_cur > max_size) { ~~~~~~~~~~~~^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_system.cpp:405:27: warning: comparison of integer expressions of different signedness: 'rlim_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rlas.rlim_cur > cur_soft_limit) { ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiapp.cpp: In member function 'void ncbi::CNcbiApplication::x_TryMain(ncbi::EAppDiagStream, const char*, int*, bool*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiapp.cpp:470:20: warning: catching polymorphic type 'class ncbi::CArgHelpException' by value [-Wcatch-value=] catch (CArgHelpException) { ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiapp.cpp: In member function 'int ncbi::CNcbiApplication::AppMain(int, const char* const*, const char* const*, ncbi::EAppDiagStream, const char*, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiapp.cpp:809:20: warning: catching polymorphic type 'class ncbi::CArgException' by value [-Wcatch-value=] catch (CArgException) { ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiargs.cpp: In member function 'bool ncbi::CArgDescriptions::x_CreateArg(const string&, const string&, bool, const string&, unsigned int, ncbi::CArgs&, bool, ncbi::CArgValue**) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiargs.cpp:2978:12: warning: catching polymorphic type 'class ncbi::CArgException' by value [-Wcatch-value=] catch (CArgException) { ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:877:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbidiag.hpp:1813:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:1813:16: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:1861:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:1924:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:1949:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:1981:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In function 'bool ncbi::s_GetLogConfigBool(ncbi::CTempString, bool, ncbi::CNcbiRegistry*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:3433:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:3574:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbifile.hpp:48, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:39: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiapp.hpp:362:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'bool ncbi::SDiagMessage::x_ParseExtraArgs(const string&, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:4734:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:4746:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'bool ncbi::SDiagMessage::ParseMessage(const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:4833:20: warning: catching polymorphic type 'class ncbi::CTimeException' by value [-Wcatch-value=] catch (CTimeException) { ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:5019:28: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:5105:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp: In member function 'virtual void ncbi::CFileHandleDiagHandler::Reopen(ncbi::CDiagHandler::TReopenFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:6386:16: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbi_process.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list, std::__cxx11::basic_string > >; ncbi::CStringPairs::TStrPairs = std::__cxx11::list, std::__cxx11::basic_string > >; EOwnership = ENcbiOwnership]': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:4491:9: required from 'void ncbi::CStringPairs::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list, std::__cxx11::basic_string > >]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp:4732:52: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:4531:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbifile.cpp: In function 'void ncbi::s_GetFileSystemInfo(const string&, ncbi::CFileUtil::SFileSystemInfo*, ncbi::TFileSystemInfo)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbifile.cpp:5020:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbitime.cpp: In member function 'bool ncbi::CTime::x_Init(const string&, const ncbi::CTimeFormat&, ncbi::CTime::EErrAction)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbitime.cpp:696:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbitime.cpp:715:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/request_ctx.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/request_ctx.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::map, std::__cxx11::basic_string, ncbi::PNocase_Generic > >; ncbi::CStringPairs::TStrPairs = std::map, std::__cxx11::basic_string, ncbi::PNocase_Generic > >; EOwnership = ENcbiOwnership]': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/request_ctx.cpp:846:43: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:4531:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiapp.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/resource_info.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap, std::__cxx11::basic_string >; ncbi::CStringPairs::TStrPairs = std::multimap, std::__cxx11::basic_string >; EOwnership = ENcbiOwnership]': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:4491:9: required from 'void ncbi::CStringPairs::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap, std::__cxx11::basic_string >]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/resource_info.cpp:326:43: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:4531:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_url.cpp: In member function 'void ncbi::CUrl::SetUrl(const string&, const ncbi::IUrlEncoder*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_url.cpp:460:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_cookies.cpp: In member function 'bool ncbi::CHttpCookie::Validate() const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_cookies.cpp:327:12: warning: catching polymorphic type 'class ncbi::CHttpCookieException' by value [-Wcatch-value=] catch (CHttpCookieException) { ^~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/guard.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/expr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/version.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_os_unix.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/request_status.cpp -o request_status.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xncbi.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib TMPL=test_mt -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/test_mt.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.test_mt.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: *** No rule to make target '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib/test' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C util -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/diff/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/image/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/qparse/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/qparse/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/test/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/demo/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/diff/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT qparse/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT demo/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT diff/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/image/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/image/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT image/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/qparse/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/image/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/diff/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/demo/Makefile gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util TMPL=util -w -j5 --jobserver-auth=7,8 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util TMPL=util -w -j5 --jobserver-auth=7,8 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/format_guess.cpp: In member function 'bool ncbi::CFormatGuess::TestFormatNewick(ncbi::CFormatGuess::EMode)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/format_guess.cpp:1007:24: warning: 'char* strncpy(char*, const char*, size_t)' accessing 12 bytes at offsets 0 and [0, 16397] may overlap up to 12 bytes at offset 11 [-Wrestrict] strncpy(test_buf, test_buf + num_read, check_size); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp: In static member function 'static void ncbi::CDictionaryUtil::Stem(const string&, std::__cxx11::string*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [5]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [4]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [4]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [4]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [6]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [6]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [8]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [5]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is below array bounds of 'const char [8]' [-Warray-bounds] const char* end2 = p - 1; ^~~~ gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/stream_source.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/cache_async.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/table_printer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/util_misc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/rangelist.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/distribution.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/scheduler.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/itransaction.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/uttp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/util_exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/line_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/miscmath.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/static_set.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/dictionary.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/unicode.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/md5.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/ascii85.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/format_guess.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/logrotate.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/strsearch.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/smalldns.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/itree.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/checksum.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/utf8.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/random_gen.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/util_exception.cpp -o util_exception.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/uttp.cpp -o uttp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/multi_writer.cpp -o multi_writer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/itransaction.cpp -o itransaction.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/thread_pool.cpp -o thread_pool.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/scheduler.cpp -o scheduler.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/distribution.cpp -o distribution.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/rangelist.cpp -o rangelist.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/util_misc.cpp -o util_misc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/table_printer.cpp -o table_printer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/stream_source.cpp -o stream_source.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/cache_async.cpp -o cache_async.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xutil.dep gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C regexp -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/regexp TMPL=regexp -w -j5 --jobserver-auth=11,12 mark-as-disabled gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -C xregexp -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp TMPL=xregexp -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp TMPL=xregexp -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp/regexp.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xregexp.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -C compress -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -C bzip2 -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j5 --jobserver-auth=13,14 mark-as-disabled gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -C zlib -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/zlib TMPL=zlib -w -j5 --jobserver-auth=13,14 mark-as-disabled gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -C api -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api TMPL=compress -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api TMPL=compress -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/archive_zip.cpp:45: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/miniz/miniz.c: In function 'ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/miniz/miniz.c: In function 'void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/miniz/miniz.c:2327:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/miniz/miniz.c:2327:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; ^ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/compress.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xcompress.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/compress' /usr/local/bin/gmake -C diff -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/diff' /usr/local/bin/gmake -C image -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/image' /usr/local/bin/gmake -C tables -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/tables/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/tables/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/tables TMPL=tables -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/tables TMPL=tables -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/tables/raw_scoremat.c. /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.tables.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C creaders -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/creaders TMPL=creaders -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/creaders TMPL=creaders -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. In function 's_RemoveBasePairCountCommentsFromData', inlined from 's_ProcessAlignFileRawForMarkedIDs' at /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/creaders/alnread.c:4456:5, inlined from 'ReadAlignmentFileEx2' at /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/creaders/alnread.c:6123:9: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/creaders/alnread.c:4422:25: warning: 'strcpy' accessing 1 byte at offsets 0 and [0, 9223372036854775807] may overlap 1 byte at offset 0 [-Wrestrict] strcpy (lip->data, cp); ^~~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/creaders/alnread.c. /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.a .libcreaders.a.stamp ar cr libcreaders.a alnread.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libcreaders.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libcreaders.a /bin/ln -f .creaders.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.creaders.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -C sequtil -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil TMPL=sequtil -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil TMPL=sequtil -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.sequtil.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -C bitset -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/bitset/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/bitset/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/bitset/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/bitset/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/bitset' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/bitset/test' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/bitset' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/bitset' /usr/local/bin/gmake -C qparse -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/qparse' /usr/local/bin/gmake -C lmdb -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: *** No rule to make target '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdb' /usr/local/bin/gmake -C lmdbxx -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/lmdbxx/example.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/lmdbxx -I/usr/local/include -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/util/lmdbxx/example.cpp -o example.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O example.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -L/usr/local/lib -llmdb -lpthread -lm -lpthread -o lmdbxx_sample strip lmdbxx_sample /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/test' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util/demo' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C connect -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ext/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/daemons/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/test/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ext/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ext/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/daemons/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT daemons/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/ext/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/daemons/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=connssl -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=connect -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=xxconnect -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=xconnect -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=xthrserv -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=connssl -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/md_wrap.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_gnutls.c. /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/aesni.c -o mbedtls/aesni.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/arc4.c -o mbedtls/arc4.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/asn1parse.c -o mbedtls/asn1parse.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/asn1write.c -o mbedtls/asn1write.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/base64.c -o mbedtls/base64.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/bignum.c -o mbedtls/bignum.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/blowfish.c -o mbedtls/blowfish.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/camellia.c -o mbedtls/camellia.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ccm.c -o mbedtls/ccm.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/cipher.c -o mbedtls/cipher.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/cipher_wrap.c -o mbedtls/cipher_wrap.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/cmac.c -o mbedtls/cmac.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ctr_drbg.c -o mbedtls/ctr_drbg.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/des.c -o mbedtls/des.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/dhm.c -o mbedtls/dhm.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ecdh.c -o 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-std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/threading.c -o mbedtls/threading.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/timing.c -o mbedtls/timing.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/mbedtls_version.c -o mbedtls/mbedtls_version.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/version_features.c -o mbedtls/version_features.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/xtea.c -o mbedtls/xtea.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/certs.c -o mbedtls/certs.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/pkcs11.c -o mbedtls/pkcs11.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509.c -o mbedtls/x509.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509_create.c -o mbedtls/x509_create.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509_crl.c -o mbedtls/x509_crl.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.connssl.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=connect -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_heapmgr.c:341:68: warning: variable 'p' set but not used [-Wunused-but-set-variable] const SHEAP_HeapBlock* b = (const SHEAP_HeapBlock*) base, *p = 0; ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_namerd.c: In function 's_ParseResponse': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_namerd.c:637:49: warning: ':' directive writing 1 byte into a region of size between 0 and 19 [-Wformat-overflow=] sprintf(now_str, "%d-%02d-%02dT%02d:%02d:%02dZ", ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_namerd.c:637:26: note: directive argument in the range [0, 60] sprintf(now_str, "%d-%02d-%02dT%02d:%02d:%02dZ", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_namerd.c:637:9: note: 'sprintf' output between 18 and 37 bytes into a destination of size 32 sprintf(now_str, "%d-%02d-%02dT%02d:%02d:%02dZ", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ now_year, now_mon, now_mday, now_hour, now_min, now_sec); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/parson.c: In function 'remove_comments': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/parson.c:281:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (i = 0; i < (ptr - string) + end_token_len; i++) ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' string = ptr + end_token_len - 1; ^~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/parson.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_lbsmd_stub.c. /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/parson.c -o parson.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.connect.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=xxconnect -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_socket_cxx.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=xconnect -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xconnect.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect TMPL=xthrserv -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/threaded_server.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/threaded_server.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/server.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/threaded_server.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/server.cpp -o server.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C services -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services TMPL=xconnserv -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services TMPL=xconnserv -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_worker.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/util.cpp -o util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/clparser.cpp -o clparser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_worker.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 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-std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include 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/usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/clparser.cpp -o clparser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/neticache_client.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libncbi_xcache_netcache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC neticache_client.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/blob_storage_netcache.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C ext -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/test' /usr/local/bin/gmake -C daemons -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect/daemons' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C cgi -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi TMPL=cgi -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi TMPL=fcgi -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi TMPL=cgi -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgiapp.cpp: In member function 'bool ncbi::CCgiApplication::x_ProcessVersionRequest()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgiapp.cpp:1885:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbicgi.cpp: In member function 'void ncbi::CCgiRequest::GetCGIEntries(ncbi::CEntryCollector_Base&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbicgi.cpp:1676:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbicgi.cpp: In member function 'ncbi::CStringUTF8 ncbi::CCgiEntry::GetValueAsUTF8(ncbi::CCgiEntry::EOnCharsetError) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbicgi.cpp:1933:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbicgi.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xcgi.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi TMPL=fcgi -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/fcgi_run.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -DNCBI_XFCGI_EXPORTS /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi/test' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C html -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html/test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html/demo/Makefile gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html TMPL=html -w -j5 --jobserver-auth=7,8 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html TMPL=html -w -j5 --jobserver-auth=7,8 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/html_exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/indentstream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/components.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/selection.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/pager.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/page.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/html.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/node.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xhtml.dep gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html/test' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html/demo' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C build-system -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -C helpers -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake[5] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake -C project_tree_builder -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/local/lib -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/project_tree_builder gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/local/lib -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/project_tree_builder gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -C msbuild -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j5 --jobserver-auth=13,14 mark-as-disabled gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/build-system' /usr/local/bin/gmake -C serial -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/soap/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/test/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/soap/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT soap/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/soap/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial TMPL=serial -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial TMPL=cserial -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial TMPL=serial -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/serializable.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objstack.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objlist.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objhook.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/serial.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/iterator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objostr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objistr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/choice.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/variant.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/member.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/memberid.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/continfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/typemap.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/typeref.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objectio.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/hookdata.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xser.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial TMPL=cserial -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/asntypes.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/asntypes.cpp -o asntypes.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xcser.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C datatool -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool TMPL=datatool -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/stdstr.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/stdstr.hpp: In constructor 'ncbi::CBitStringTypeStrings::CBitStringTypeStrings(const string&, const ncbi::CComments&, ncbi::CTypeStrings*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/stdstr.hpp:133:27: warning: 'ncbi::CBitStringTypeStrings::m_BitNames' will be initialized after [-Wreorder] AutoPtr m_BitNames; ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/stdstr.cpp:201:56: warning: base 'ncbi::CStdTypeStrings' [-Wreorder] : m_BitNames(bitNames), CParent(type,comments,false) ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/stdstr.cpp:199:1: warning: when initialized here [-Wreorder] CBitStringTypeStrings::CBitStringTypeStrings(const string& type, ^~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/datatool.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include 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jsdparser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f datatool /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/test' /usr/local/bin/gmake -C soap -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial/soap' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C db -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/db/bdb/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/db/bdb/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT bdb/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/bdb/Makefile /usr/local/bin/gmake -C sqlite -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -C bdb -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db/bdb' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/db' /usr/local/bin/gmake -C dbapi -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/simple/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/lang_bind/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/test/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/lang_bind/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT lang_bind/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/simple/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT simple/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/simple/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/test/Makefile gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi TMPL=dbapi -w -j5 --jobserver-auth=7,8 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi TMPL=dbapi -w -j5 --jobserver-auth=7,8 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp:118:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] buf_size); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:269:27: note: declared here virtual CNcbiOstream& GetBlobOStream(size_t blob_size, ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp:126:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] buf_size); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:294:27: note: declared here virtual CNcbiOstream& GetBlobOStream(IConnection *conn, ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp:156:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] buf_size); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp:163:72: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] (log_it == eDisableLog) ? fBOS_SkipLogging : 0); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:621:22: note: declared here virtual IWriter* GetBlobWriter(unsigned int col, ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp: In member function 'void ncbi::CResultSet::x_CacheItems(int)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:261:59: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver_mgr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/stmt_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/public.hpp:541:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(); ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:329:66: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] return IResultSet::GetBlobOStream(blob_size, log_it, buf_size); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/stmt_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:274:27: note: declared here virtual CNcbiOstream& GetBlobOStream(size_t blob_size, ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:330:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:325:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:337:72: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] return IResultSet::GetBlobOStream(conn, blob_size, log_it, buf_size); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/stmt_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:300:27: note: declared here virtual CNcbiOstream& GetBlobOStream(IConnection *conn, ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:338:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:332:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:355:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:348:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:365:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:357:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp: In member function 'ncbi::CNcbiOstream& ncbi::CResultSet::xGetBlobOStream(ncbi::CDB_Connection*, size_t, ncbi::TBlobOStreamFlags, size_t, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:384:63: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver_mgr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/stmt_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/public.hpp:541:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(); ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/blobstream.cpp: In constructor 'ncbi::CBlobOStream::CBlobOStream(ncbi::CDB_CursorCmd*, unsigned int, size_t, std::streamsize, ncbi::TBlobOStreamFlags, ncbi::CDB_Connection*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/blobstream.cpp:86:69: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] (flags & fBOS_SkipLogging) == 0)); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver_mgr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/bytestreambuf.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/blobstream.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/blobstream.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/public.hpp:890:30: note: declared here virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, ^~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rw_impl.cpp: In constructor 'ncbi::CxBlobWriter::CxBlobWriter(ncbi::CDB_CursorCmd*, unsigned int, size_t, ncbi::TBlobOStreamFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rw_impl.cpp:89:68: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] (flags & fBOS_SkipLogging) == 0); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver_mgr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rw_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rw_impl.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/public.hpp:890:30: note: declared here virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, ^~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:122:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:106:15: note: declared here CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:129:68: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] return ICursor::GetBlobOStream(col, blob_size, log_it, buf_size); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/conn_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:602:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:130:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:124:15: note: declared here CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:145:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] } ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:132:10: note: declared here IWriter* CCursor::GetBlobWriter(unsigned int col, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:151:57: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] return ICursor::GetBlobWriter(col, blob_size, log_it); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/conn_impl.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:626:22: note: declared here virtual IWriter* GetBlobWriter(unsigned int col, ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:152:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] } ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp:147:10: note: declared here IWriter* CCursor::GetBlobWriter(unsigned int col, ^~~~~~~ gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/variant.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE 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-D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.dbapi.dep gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C driver -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds64/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/util/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds64/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds64/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/mysql/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/samples/Makefile.in` /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT util/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/mysql/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/samples/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ctlib/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ftds64/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ftds100/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT mysql/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT samples/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ftds95/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds64/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'bool ncbi::I_CursorCmd::UpdateTextImage(unsigned int, ncbi::CDB_Stream&, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/interfaces.cpp:248:45: warning: 'virtual bool ncbi::I_CursorCmd::UpdateBlob(unsigned int, ncbi::CDB_Stream&, bool)' is deprecated [-Wdeprecated-declarations] return UpdateBlob(item_num, data, log_it); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/interfaces.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/interfaces.hpp:561:18: note: declared here virtual bool UpdateBlob(unsigned int item_num, CDB_Stream& data, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'ncbi::I_BlobDescriptor* ncbi::I_Result::GetImageOrTextDescriptor()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/interfaces.cpp:276:30: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::I_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] return GetBlobDescriptor(); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/interfaces.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/driver/interfaces.hpp:769:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(void) = 0; ^~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/handle_stack.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/public.cpp -o public.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/types.cpp -o types.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libdbapi_driver-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C util -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/local/bin/gmake -C ctlib -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/local/bin/gmake -C ftds64 -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' /usr/local/bin/gmake -C ftds95 -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' /usr/local/bin/gmake -C ftds100 -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /usr/local/bin/gmake -C ftds-default -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/local/bin/gmake -C mysql -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/local/bin/gmake -C odbc -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w -j5 --jobserver-auth=13,14 mark-as-disabled gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -C samples -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C simple -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/simple' /usr/local/bin/gmake -C cache -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/admintool/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/admintool/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/admintool/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT admintool/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache/admintool/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache/test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp: In member function 'ncbi::ERW_Result ncbi::CDBAPI_CacheIWriter::x_SaveBlob(ncbi::ICursor&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:436:65: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] ostream& out = cur.GetBlobOStream(1, m_BytesInBuffer); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:441:69: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] ostream& out = cur.GetBlobOStream(1, (size_t)total_bytes); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp: In member function 'bool ncbi::CDBAPI_Cache::x_UpdateBlob(ncbi::IStatement&, const string&, int, const string&, const void*, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:1246:51: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] ostream& out = cur->GetBlobOStream(1, size); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o /bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp /bin/rm -f libncbi_xcache_dbapi-dll.so .libncbi_xcache_dbapi-dll.so.stamp ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libncbi_xcache_dbapi-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -ldbapi -ldbapi_driver-dll -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi.a /bin/ln -f .ncbi_xcache_dbapi.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi.dep /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi-dll.so /bin/ln -f .ncbi_xcache_dbapi-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi-dll.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache/test' /usr/local/bin/gmake -C admintool -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/cache' /usr/local/bin/gmake -C lang_bind -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C objects -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/Makefile.sources builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/local/bin/gmake -w -j5 --jobserver-auth=12,14"; export MAKE; \ ( cd $i && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w -j5 --jobserver-auth=12,14" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit/seqsplit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars/medlars.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqblock/seqblock.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres/seqres.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqblock' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. Warning: (810.1) No service name provided for CTrackMgrClient gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: warning: -jN forced in submake: disabling jobserver mode. PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtable' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtable' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit/submit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid' /usr/local/bin/gmake -w -j5 --jobserver-auth=12,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C general -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/unit_test/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general/test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh general all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general TMPL=general -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general TMPL=general -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.general.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general/test' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C biblio -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh biblio all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio TMPL=biblio -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio TMPL=biblio -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.biblio.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -C medline -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh medline all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline TMPL=medline -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline TMPL=medline -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.medline.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -C pub -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh pub all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub TMPL=pub -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub TMPL=pub -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.pub.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -C seqcode -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh seqcode all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode TMPL=seqcode -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode TMPL=seqcode -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode/seqcode__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode/seqcode___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seqcode.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -C seq -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/test/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq/test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/Makefile.sources builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/local/bin/gmake -w -j5 --jobserver-auth=14,16"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../$x ; \ (cd $d && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -j5 --jobserver-auth=14,16 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -w -j5 --jobserver-auth=14,16 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqblock' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -w -j5 --jobserver-auth=14,16 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -w -j5 --jobserver-auth=14,16 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -w -j5 --jobserver-auth=14,16 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres' /usr/local/bin/gmake -w -j5 --jobserver-auth=14,16 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtable' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtable' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh seq all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqblock/seqblock.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres/seqres.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq TMPL=seq -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq TMPL=seq -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqblock/seqblock.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres/seqres.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, from seqfeat__.cpp:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::IsCorrectDateFormat(const string&, bool&, bool&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:435:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException ) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:457:22: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:487:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_tree.cpp:2864:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if ( row_n == p_row ) { ~~~~~~^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1651:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=] catch (CAnnotMapperException) { ^~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/sofa_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/sofa_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq/test' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C seqset -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh seqset all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset TMPL=seqset -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset TMPL=seqset -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seqset.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seqset.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C submit -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh submit all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit TMPL=submit -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit TMPL=submit -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit/submit__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.submit.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -C seqedit -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh seqedit all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit TMPL=seqedit -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit TMPL=seqedit -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit/seqedit__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit/seqedit___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seqedit.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit/seqedit__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit/seqedit___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seqedit.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -C seqsplit -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh seqsplit all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -C id1 -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1 && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh id1 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1 TMPL=id1 -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1 TMPL=id1cli -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1 TMPL=id1 -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/id1__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.id1.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1 TMPL=id1cli -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/id1_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/id1_client.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.id1cli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C id2 -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2 && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh id2 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit/seqsplit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2 TMPL=id2 -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2 TMPL=id2cli -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2 TMPL=id2 -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqsplit/seqsplit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.id2.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2 TMPL=id2cli -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2_client.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.id2cli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2_client.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.id2cli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -C entrez2 -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2 && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh entrez2 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/entrez2__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.entrez2.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/entrez2_client.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C pubmed -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh pubmed all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed TMPL=pubmed -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed TMPL=pubmed -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.pubmed.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -C medlars -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh medlars all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars TMPL=medlars -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars TMPL=medlars -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars/medlars__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.medlars.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -C mla -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh mla all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars/medlars.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla TMPL=mla -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla TMPL=mlacli -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla TMPL=mla -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medlars/medlars.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla/mla__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.mla.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla TMPL=mlacli -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla/mla_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla/mla_client_.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.mlacli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -C proj -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh proj all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj TMPL=proj -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj TMPL=proj -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pubmed/pubmed.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj/proj__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj/proj___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.proj.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -C scoremat -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh scoremat all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat TMPL=scoremat -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat TMPL=scoremat -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.scoremat.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.scoremat.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -C blast -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh blast all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast TMPL=blast -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast TMPL=blast -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/blast__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/names.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/blastclient.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -C blastdb -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh blastdb all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb TMPL=blastdb -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb TMPL=blastdb -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb/blastdb__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb/blastdb___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.blastdb.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -C blastxml -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh blastxml all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml TMPL=blastxml -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml TMPL=blastxml -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml/blastxml__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.blastxml.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -C blastxml2 -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2 && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -C mmdb -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb/Makefile.sources builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/local/bin/gmake -w -j5 --jobserver-auth=14,16"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -w -j5 --jobserver-auth=14,16 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -w -j5 --jobserver-auth=14,16 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -w -j5 --jobserver-auth=14,16 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3' gmake[8]: Nothing to be done for 'all'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb TMPL=mmdb -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb TMPL=mmdb -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb1__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb1__.cpp -o mmdb1__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb2__.cpp -o mmdb2__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb3__.cpp -o mmdb3__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb1___.cpp -o mmdb1___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb2___.cpp -o mmdb2___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.mmdb.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb1__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb1__.cpp -o mmdb1__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb2__.cpp -o mmdb2__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb3__.cpp -o mmdb3__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb1___.cpp -o mmdb1___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb2___.cpp -o mmdb2___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.mmdb.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -C cn3d -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh cn3d all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d TMPL=cn3d -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d TMPL=cn3d -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.cn3d.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/bin/awk: can't open file make_cn3d.log.new source line number 4 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.cn3d.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -C cdd -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh cdd all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd TMPL=cdd -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd TMPL=cdd -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.cdd.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.cdd.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -C ncbimime -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh ncbimime all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biblio/biblio.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/medline/medline.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb1/mmdb1.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb2/mmdb2.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mmdb3/mmdb3.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cn3d/cn3d.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C pcsubstance -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -C pcassay -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh pcassay all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay TMPL=pcassay -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay TMPL=pcassay -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay/pcassay__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.pcassay.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -C gbseq -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh gbseq all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq TMPL=gbseq -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq TMPL=gbseq -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq/gbseq__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.gbseq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq/gbseq__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.gbseq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -C insdseq -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh insdseq all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq TMPL=insdseq -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq TMPL=insdseq -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq/insdseq__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.insdseq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -C tinyseq -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh tinyseq all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -C biotree -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh biotree all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree TMPL=biotree -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree TMPL=biotree -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree/biotree__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.biotree.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -C entrezgene -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh entrezgene all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/run_with_lock: Unable to rename log file make_entrezgene.log.new: No such file or directory. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -C omssa -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh omssa all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa TMPL=omssa -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa TMPL=omssa -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa/omssa__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.omssa.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -C remap -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh remap all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap TMPL=remap -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap TMPL=remapcli -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap TMPL=remap -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap/remap__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap/remap___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.remap.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap TMPL=remapcli -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap/remap_client.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.remapcli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -C seqtest -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh seqtest all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest TMPL=seqtest -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest TMPL=seqtest -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest/seqtest__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seqtest.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -C taxon1 -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1 && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh taxon1 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if( m_types.size() <= field_no ) { ~~~~~~~~~~~~~~~^~~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/taxon1__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.taxon1.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1 TMPL=local_taxon -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/local_taxon.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -C taxon3 -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3 && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh taxon3 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3/taxon3___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.taxon3.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -C gbproj -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh gbproj all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit/submit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj TMPL=gbproj -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj TMPL=gbproj -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqset/seqset.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/submit/submit.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj/gbproj__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.gbproj.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -C trackmgr -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh trackmgr all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/tms_exception.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -C valerr -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh valerr all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr TMPL=valerr -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr TMPL=valerr -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr/valerr__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.valerr.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -C valid -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh valid all /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid TMPL=valid -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid TMPL=valid -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid/valid__.cpp:3: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid/Comment_set.cpp: In static member function 'static std::vector > ncbi::objects::CComment_set::GetFieldNames(const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid/Comment_set.cpp:162:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException ) { ^~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid/valid__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid/valid___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.valid.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -C access -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh access all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access TMPL=access -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access TMPL=access -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access/access__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access/access__.cpp -o access__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.access.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -C docsum -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh docsum all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum TMPL=docsum -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum TMPL=docsum -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum/docsum__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.docsum.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum/docsum__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.docsum.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -C featdef -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh featdef all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef TMPL=featdef -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef TMPL=featdef -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef/featdef__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef/featdef___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.featdef.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -C genomecoll -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh genome_collection all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/make_asn.lock/usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' . Acquired /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/make_asn.lock for PID 330413 (make_asn) gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=11,12 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.19.1 gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -C gc_cli -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O gc_cli.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o gc_cli strip gc_cli /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/gc_cli gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -C homologene -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh homologene all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene TMPL=homologene -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene TMPL=homologene -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqalign/seqalign.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene/homologene__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.homologene.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -C mim -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh mim all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim TMPL=mim -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim TMPL=mim -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim/mim__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.mim.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' /usr/bin/awk: can't open file make_mim.log.new source line number 4 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim/mim__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.mim.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -C objprt -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh objprt all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt TMPL=objprt -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt TMPL=objprt -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt/objprt__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt/objprt___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.objprt.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -C variation -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh variation all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation TMPL=variation -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation TMPL=variation -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqfeat/seqfeat.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seqloc/seqloc.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/pub/pub.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation/variation__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.variation.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -C macro -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh macro all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro TMPL=macro -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro TMPL=macro -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro' In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::__cxx11::string&, const string&, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_ReplaceNocase(std::__cxx11::string&, const string&, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:158: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetConstraintString(ncbi::objects::CString_constraint::ECase) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp:479:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetCompareString(const ncbi::objects::CMatchString&, ncbi::objects::CString_constraint::ECase) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp:513:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.macro.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -C genesbyloc -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -C coords -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh objcoords all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords TMPL=objcoords -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords TMPL=objcoords -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords/objcoords__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.objcoords.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -C varrep -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh varrep all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep TMPL=varrep -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep TMPL=varrep -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=9,10 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep/varrep__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.varrep.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/varrep' /usr/local/bin/gmake -C variation_libs -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -C dbsnp -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -C search_by_rsid -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=13,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.19.1 gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=13,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/trackmgr/trackmgr.asn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.19.1 gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/local/bin/gmake -C tooltip_service -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. cd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=13,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.19.1 gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -w -j5 --jobserver-auth=13,14 -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src all gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool -oR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++ \ -opm /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.19.1 gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C objmgr -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/test/Makefile gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr TMPL=objmgr -w -j5 --jobserver-auth=7,8 export-headers gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr TMPL=objmgr -w -j5 --jobserver-auth=7,8 all gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_id_sort.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for 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-c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/test' /usr/local/bin/gmake -C util -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util TMPL=util -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util TMPL=util -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const ncbi::objects::CBioseq_Handle&, ncbi::objects::TWeights&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/weight.cpp:362:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TS2PFlags, ncbi::objects::CScope*, int*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/sequence.cpp:703:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::ProductToSource(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TP2SFlags, ncbi::objects::CScope*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/sequence.cpp:746:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/sequence.cpp:751:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CBioseqIndex::x_InitFeats()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp:1899:20: warning: variable 'sgx' set but not used [-Wunused-but-set-variable] CGapIndex* sgx = NULL; ^~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp:43: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/indexer.hpp: In constructor 'ncbi::objects::CGapIndex::CGapIndex(ncbi::TSeqPos, ncbi::TSeqPos, ncbi::TSeqPos, const string&, const std::vector >&, bool, bool, ncbi::objects::CBioseqIndex&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/indexer.hpp:798:10: warning: 'ncbi::objects::CGapIndex::m_IsAssemblyGap' will be initialized after [-Wreorder] bool m_IsAssemblyGap; ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/indexer.hpp:788:28: warning: 'ncbi::CWeakRef ncbi::objects::CGapIndex::m_Bsx' [-Wreorder] CWeakRef m_Bsx; ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp:2859:1: warning: when initialized here [-Wreorder] CGapIndex::CGapIndex (TSeqPos start, ^~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp:3372:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for (int i = 0; i < sizeof (mixedTags); i++) { ~~^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::__cxx11::string)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp:3449:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int i = 0; i < str.length(); i++) { ~~^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/sequence.cpp: In member function 'ncbi::CRef ncbi::objects::SRelLoc::Resolve(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*, ncbi::objects::SRelLoc::TFlags) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/sequence.cpp:4597:22: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] } catch (CObjmgrUtilException) { ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp: In function 'bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:1408:80: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:1408:80: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp: In function 'std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:2023:61: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:2023:61: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:2090:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:2294:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp: In function 'size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:2921:68: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:2921:68: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:2922:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (pos == idx + 2) { ~~~~^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffixIdx(const ncbi::objects::CBioseq_Handle&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:2977:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:2977:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:3130:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:3130:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/util/strsearch.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp:3557:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/objutil.cpp:1824:81: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1032:10: warning: unused variable 'added' [-Wunused-variable] bool added = false, rval = false; ^~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/weight.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C split -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split TMPL=id2_split -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split TMPL=id2_split -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/split_exceptions.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.id2_split.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C objtools -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname 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/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT manip/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT validator/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/test/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/lds2/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/manip/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT align/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT eutils/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT snputil/Makefile config.status: creating 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/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT writers/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/snputil/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/writers/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/variation/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/Makefile /usr/local/bin/gmake -C logging -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/logging TMPL=logging -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/logging TMPL=logging -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/logging/listener.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/logging/message.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/logging/message.cpp -o message.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xlogging.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/logging' /usr/local/bin/gmake -C unit_test_util -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' /usr/local/bin/gmake -C readers -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/app/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/test/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/unit_test/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/app/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT app/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers TMPL=xobjread -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers TMPL=xobjreadex -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers TMPL=xobjread -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_read.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnObjectChange()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:562:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch(CException e){ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/aln_reader.cpp:408:13: warning: comparison of integer expressions of different signedness: 'ncbi::CAlnReader::TNumrow' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (row > m_MiddleSections.size()) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/bed_reader.cpp:500:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (blockSizes.size() != blockCount) { ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/bed_reader.cpp:521:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (blockStarts.size() != blockCount) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::ILineReader&, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::objects::CReaderBase::TReaderFlags, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp: In destructor 'virtual ncbi::objects::CFastaReader::~CFastaReader()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:248:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:248:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp: In member function 'virtual void ncbi::objects::CFastaReader::ParseDefLine(const TStr&, ncbi::objects::ILineErrorListener*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = data.range_end - data.range_start; ^~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = data.range_end - data.range_start; ^~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/fasta.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/rm_reader.cpp:551:44: warning: enum constant in boolean context [-Wint-in-bool-context] if (fRemoveRedundancy && m_Library && ^~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeatureTableReader_Imp::EQual, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/readfeat.cpp:1268:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] } catch( CStringException ) { ^~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/readfeat.cpp: In member function 'void ncbi::objects::CFeatureTableReader_Imp::x_InitId(const string&, ncbi::objects::CFeatureTableReader_Imp::TFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/readfeat.cpp:3382:46: warning: enum constant in boolean context [-Wint-in-bool-context] (flags && CFeature_table_reader::fAllIdsAsLocal) ? CSeq_id::fParse_AnyLocal:CSeq_id::fParse_Default); ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/gtf_reader.cpp: In member function 'virtual bool ncbi::objects::CGtfReader::x_UpdateAnnotCds(const ncbi::objects::CGtfReadRecord&, ncbi::CRef)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/gtf_reader.cpp:241:10: warning: unused variable 'needXref' [-Wunused-variable] bool needXref = false; ^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/gff2_reader.cpp:1087:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/gff2_reader.cpp:1176:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] for (auto i=0; i)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/gff2_reader.cpp:1261:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] for (auto i=0; i, std::__cxx11::basic_string > >&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:879:20: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] for (int i=0; i&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:915:25: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for (auto i=0; i >&, std::vector >&, std::vector&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^~~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seqdb.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seqdb_demo.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o seqdb_demo strip seqdb_demo /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/seqdb_demo gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:148:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (ssize_t i = 0; i < oids2iterate.size(); i++) { ~~^~~~~~~~~~~~~~~~~~~~~ gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seqdb_perf.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -L/usr/local/lib -llmdb -lpthread -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/seqdb_perf gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C seqdb_writer -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.writedb.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C gene_info_reader -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.gene_info.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O gene_info_reader_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -L/usr/local/lib -llzo2 -lz -L/usr/local/lib -llmdb -lpthread -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/gene_info_reader gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C gene_info_writer -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /usr/local/bin/gmake -C services -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/services/blast_services.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.blast_services.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C blastdb_format -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp: In member function 'std::__cxx11::string ncbi::CBlastDBExtractor::ExtractLeafTaxIds()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:396:24: warning: variable 'taxids_iter' set but not used [-Wunused-but-set-variable] set::iterator taxids_iter = taxids.begin(); ^~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config /* = CSeqFormatterConfig() */) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/blast' /usr/local/bin/gmake -C lds2 -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/lds2' /usr/local/bin/gmake -C data_loaders -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT lds2/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT cdd/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT patcher/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /usr/local/bin/gmake -C genbank -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT pubseq2/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT pubseq/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libncbi_xreader-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libncbi_xloader_genbank-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC gbloader.o gbload_util.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C cache -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libncbi_xreader_cache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_cache.o writer_cache.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libncbi_xreader_cache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_cache.o writer_cache.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -C pubseq -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/local/bin/gmake -C id2 -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp ar cr libncbi_xreader_id2.a reader_id2.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libncbi_xreader_id2-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_id2.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f .ncbi_xreader_id2.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/ln -f libncbi_xreader_id2-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -C id1 -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp ar cr libncbi_xreader_id1.a reader_id1.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libncbi_xreader_id1-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_id1.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -C pubseq2 -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/local/bin/gmake -C gicache -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DataToGiData': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_LoadAdd': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_SetMeta': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_GetAccFreqTab': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GiDataIndex_New': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:205:71: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to access file (%s): %s\n", data_index->m_FileName, strerror(rc)); ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:205:4: note: 'snprintf' output 38 or more bytes (assuming 1061) into a destination of size 256 snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to access file (%s): %s\n", data_index->m_FileName, strerror(rc)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:240:71: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 222 [-Wformat-truncation=] snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to open LMDB db (%s): %s\n", data_index->m_FileName, mdb_strerror(rc)); ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:240:3: note: 'snprintf' output 39 or more bytes (assuming 1062) into a destination of size 256 snprintf(logmsg, sizeof(logmsg), "GI_CACHE: failed to open LMDB db (%s): %s\n", data_index->m_FileName, mdb_strerror(rc)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /usr/bin/g++ -std=gnu++11 -msse4.2 -shared -o libncbi_xreader_gicache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O -fPIC reader_gicache.o gicache.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -L/usr/local/lib -llmdb -lpthread /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.so /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C lds2 -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /usr/local/bin/gmake -C blastdb -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j5 --jobserver-auth=13,14 export-headers gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Nothing to be done for 'export-headers'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C patcher -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /usr/local/bin/gmake -C asn_cache -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /usr/local/bin/gmake -C cdd -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/data_loaders' /usr/local/bin/gmake -C simple -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/simple/simple_om.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -C alnmgr -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ~~~~^~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ match1->m_Score > match2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand1 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 != eNa_strand_minus)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare] if (start_its_i->second->first != -1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:38: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:752:44: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] while(start < start2 + len * width2) { ~~~~^~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::__cxx11::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::__cxx11::string&, const TSignedRange&, bool) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (translate && aln_range.GetLength() >= trim_from + trim_to) { ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C cddalignview -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cddalignview' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/test' /usr/local/bin/gmake -C manip -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/manip' /usr/local/bin/gmake -C edit -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/protein_match/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/protein_match/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/protein_match/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT protein_match/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit/protein_match/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit TMPL=edit -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit TMPL=edit -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] remove_trailingX); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/promote.cpp:52: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/sequence.hpp:934:17: note: declared here static void TranslateCdregion(string& prot, ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] remove_trailingX); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/promote.cpp:52: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/sequence.hpp:934:17: note: declared here static void TranslateCdregion(string& prot, ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:172:44: warning: array subscript has type 'char' [-Wchar-subscripts] while (descr_insert_order[index] != 0) ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:45: warning: array subscript has type 'char' [-Wchar-subscripts] if (descr_insert_order[index] >= size()) ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:47: warning: comparison of integer expressions of different signedness: 'char' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (descr_insert_order[index] >= size()) ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:175:52: warning: array subscript has type 'char' [-Wchar-subscripts] resize(descr_insert_order[index], kMax_Char); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:176:44: warning: array subscript has type 'char' [-Wchar-subscripts] at(descr_insert_order[index]) = index; ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1823:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ~~~~~~^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1825:74: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ~~~~~~^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1848:63: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ~~~~~~^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1850:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ~~~~~~^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] switch (seqmap_ci.GetType()) { ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] if (pos >= start && pos < start + len) { ~~~~^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] if (pos >= start && pos < start + len) { ~~~~^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2989:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] else if (seg_start < cut_from) { ~~~~~~~~~~^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2992:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] else if (seg_start >= cut_from && ~~~~~~~~~~^~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/dblink_field.cpp: In static member function 'static ncbi::objects::edit::CDBLinkField::EDBLinkFieldType ncbi::objects::edit::CDBLinkField::GetTypeForLabel(std::__cxx11::string)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/dblink_field.cpp:283:17: warning: variable 'normal' set but not used [-Wunused-but-set-variable] CTempString normal = GetNormalizedDBLinkFieldName(label); ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/struc_comm_field.cpp: In static member function 'static bool ncbi::objects::edit::CStructuredCommentField::IsValid(const ncbi::objects::CUser_object&, const string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:496:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/struc_comm_field.cpp: In static member function 'static void ncbi::objects::edit::CStructuredCommentField::ReorderFields(ncbi::objects::CUser_object&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:515:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] int best_fit_size = -1; ^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp: In member function 'bool ncbi::objects::edit::CLocationEditPolicy::ApplyPolicyToFeature(ncbi::objects::CSeq_feat&, ncbi::objects::CScope&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp:649:59: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/edit/cds_fix.hpp:67:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp:649:59: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/edit/cds_fix.hpp:67:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp: In function 'bool ncbi::objects::edit::ApplyPolicyToFeature(const ncbi::objects::edit::CLocationEditPolicy&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp:882:69: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/edit/cds_fix.hpp:70:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp:882:69: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp:35: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/edit/cds_fix.hpp:70:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustProteinFeaturePartialsToMatchCDS(ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_feat&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:411:63: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/edit/cds_fix.hpp:67:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:411:63: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/edit/cds_fix.hpp:67:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:484:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:484:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:490:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:490:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:550:56: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:451:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:550:56: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp:451:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/mail_report.cpp: In function 'void ncbi::objects::edit::MakeMailReportPostReport(ncbi::objects::CSeq_table&, ncbi::objects::CScope&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/mail_report.cpp:103:13: warning: unused variable 'taxid' [-Wunused-variable] int taxid = 0; ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int j = i + 1; j < spans.size(); j++) ~~^~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::__cxx11::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function] static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) ^~~~~~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/apply_mods.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/gene_utils.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/promote.cpp -o promote.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/apply_mods.cpp -o apply_mods.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o apply_mods.o text_object_description.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C protein_match -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit/protein_match' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C cleanup -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup.cpp:2701:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (abs((long int)this_start - (long int)prev_end) < min_len) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:909:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rslt[0] != start) ~~~~~~~~^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:948:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rslt[0] != start) ~~~~~~~~^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:975:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (rslt[0] != start) ~~~~~~~~^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5779:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { ~~~~~~~~~~^~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5793:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if( first_pos > last_pos ) { ~~~~~~~~~~^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7012:10: warning: unused variable 'changed' [-Wunused-variable] bool changed = false; ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_FixStructuredCommentKeywords(ncbi::objects::CBioseq&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:8762:22: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:8764:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C format -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format TMPL=xformat -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format TMPL=xformat -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::__cxx11::string&, const ncbi::objects::CUser_object&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/comment_item.cpp:374:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp: In member function 'void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp:1409:28: warning: unused variable 'cfg' [-Wunused-variable] const CFlatFileConfig& cfg = ctx.Config(); ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp:2049:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp: In static member function 'static std::__cxx11::string ncbi::objects::CFeatureItem::x_SeqIdWriteForTable(const ncbi::objects::CBioseq&, bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp:5378:20: warning: variable 'patent' set but not used [-Wunused-but-set-variable] const CSeq_id* patent = NULL; ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp:5379:20: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] const CSeq_id* pdb = NULL; ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/keywords_item.cpp: In member function 'virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/keywords_item.cpp:310:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException) { ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp:6230:13: warning: 'bool ncbi::objects::s_IsExactAndNonExactMatchOnNoteQuals(ncbi::objects::CFlatFeature::TQuals&, const string&)' defined but not used [-Wunused-function] static bool s_IsExactAndNonExactMatchOnNoteQuals(CFlatFeature::TQuals& qvec, const string& str) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/primary_item.cpp:218:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/primary_item.cpp:219:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (this_start < (15 + last_stop) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/source_item.cpp:182:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/source_item.cpp:387:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'unsigned int' [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/qualifiers.cpp:1115:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp:1114:34: warning: unused variable 'format' [-Wunused-variable] CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_CollectBioSources(ncbi::objects::CFlatGatherer::TSourceFeatSet&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp:1904:13: warning: unused variable 'scope' [-Wunused-variable] CScope* scope = &ctx.GetScope(); ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp: In lambda function: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp:2991:59: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] while (gap_data.has_gap && gap_data.gap_start < feat_start) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp:3005:56: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (gap_data.has_gap && gap_data.gap_start == feat_start && feat.GetFeatSubtype() == CSeqFeatData::eSubtype_gap) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp:2840:13: warning: 'bool ncbi::objects::s_IsExon(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] static bool s_IsExon(const CSeq_feat_Handle& feat) ^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp:2835:13: warning: 'bool ncbi::objects::s_IsSNP(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] static bool s_IsSNP(const CSeq_feat_Handle& feat) ^~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp:829:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_generator.cpp:331:10: warning: variable 'isNgNtNwNz' set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_generator.cpp:332:10: warning: variable 'isGED' set but not used [-Wunused-but-set-variable] bool isGED = false; ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_generator.cpp:333:10: warning: variable 'isTPA' set but not used [-Wunused-but-set-variable] bool isTPA = false; ^~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genbank_formatter.cpp:1983:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] } catch (CSeqVectorException) { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genbank_formatter.cpp:2024:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] } catch (CSeqVectorException) { ^~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genbank_formatter.cpp: At global scope: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::__cxx11::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function] static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gbseq_formatter.cpp: In member function 'virtual void ncbi::objects::CGBSeqFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:1025:23: warning: unused variable 'vec' [-Wunused-variable] const CSeqVector& vec = seq.GetSequence(); ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:1028:13: warning: unused variable 'base_count' [-Wunused-variable] TSeqPos base_count = from; ^~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for 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-O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xformat.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/accession_item.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xformat.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -C validator -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/validator' /usr/local/bin/gmake -C asniotest -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/asniotest' /usr/local/bin/gmake -C align -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align' /usr/local/bin/gmake -C seqmasks_io -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C eutils -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/eutils' /usr/local/bin/gmake -C align_format -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format TMPL=align_format -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format TMPL=align_format -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/showalign.cpp:2048:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] } catch (CException e){ ^ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/showalign.cpp:4388:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/showalign.cpp:4388:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/aln_printer.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/format_flags.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.align_format.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Nothing to be done for 'mark-as-disabled_r'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C snputil -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/snputil' /usr/local/bin/gmake -C uudutil -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/uudutil' /usr/local/bin/gmake -C variation -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/variation' /usr/local/bin/gmake -C writers -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/writers' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C pubseq_gateway -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objtools' /usr/local/bin/gmake -C ctools -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/ctools' /usr/local/bin/gmake -C sra -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/sra' /usr/local/bin/gmake -C algo -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/sequence/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/align/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/structure/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/ms/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/gnomon/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/gnomon/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/ms/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/ms/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/tree/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/phy_tree/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/phy_tree/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/sequence/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/structure/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/align/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/tree/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/seqqa/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/cobalt/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/text/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/volume_merge/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/primer/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/volume_merge/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/text/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/cobalt/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/seqqa/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/id_mapper/Makefile.in` /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT sequence/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT align/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT structure/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/primer/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ms/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/id_mapper/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/ms/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/structure/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT tree/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT phy_tree/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT seqqa/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/align/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/sequence/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/tree/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT text/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT volume_merge/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT primer/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/cobalt/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/text/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/primer/Makefile /usr/local/bin/gmake -C dustmask -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/dustmask/symdust.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -C winmask -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ~^~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_config.cpp: In static member function 'static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(type == eAny || type >= eGenerateMasksWithDuster) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' arg_desc.AddDefaultKey( "dust_level", "dust_level", ^~~~~~~~ gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -C sequence -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/sequence' /usr/local/bin/gmake -C blast -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT dbindex_search/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT blast_sra_input/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /usr/local/bin/gmake -C composition_adjustment -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^~~~~~~~~~~~~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -C core -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core TMPL=blast -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core TMPL=blast -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return 0; ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/link_hsps.c: In function 's_FwdCompareHSPs': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/link_hsps.c:133:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (h1->query.offset < h2->query.offset) ^~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/spliced_hits.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_program.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_posit.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/phi_lookup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/pattern.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_encoding.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/ncbi_math.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/ncbi_std.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/matrix_freq_ratios.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/lookup_wrap.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/lookup_util.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/link_hsps.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/aa_ungapped.c. /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/pattern.c -o pattern.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.blast.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -C dbindex -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C makeindex -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o mkindex_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o makembindex strip makembindex /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/makembindex gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C dbindex_search -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /usr/local/bin/gmake -C api -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api TMPL=xblast -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api TMPL=xblast -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function 'bool ncbi::blast::CBlastOptionsLocal::Validate() const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:387:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:396:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' return true; ^~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_aux.cpp. echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_spliced_hits.c. Updating dependency information for .core_hspfilter_mapper.c. Updating dependency information for .core_jumper.c. Updating dependency information for .core_boost_erf.c. Updating dependency information for .core_blast_hspstream_mt_utils.c. Updating dependency information for .core_blast_traceback_mt_priv.c. Updating dependency information for .core_index_ungapped.c. Updating dependency information for .core_gencode_singleton.c. Updating dependency information for .core_split_query.c. Updating dependency information for .core_blast_dynarray.c. Updating dependency information for .core_blast_sw.c. Updating dependency information for .core_blast_tune.c. Updating dependency information for .core_blast_query_info.c. Updating dependency information for .core_blast_program.c. Updating dependency information for .core_blast_posit.c. Updating dependency information for .core_blast_parameters.c. Updating dependency information for .core_phi_lookup.c. Updating dependency information for .core_phi_gapalign.c. Updating dependency information for .core_phi_extend.c. Updating dependency information for .core_pattern.c. Updating dependency information for .core_blast_encoding.c. Updating dependency information for .core_ncbi_math.c. Updating dependency information for .core_ncbi_std.c. Updating dependency information for .core_matrix_freq_ratios.c. Updating dependency information for .core_lookup_wrap.c. Updating dependency information for .core_lookup_util.c. Updating dependency information for .core_link_hsps.c. Updating dependency information for .core_hspfilter_culling.c. Updating dependency information for .core_hspfilter_besthit.c. Updating dependency information for .core_hspfilter_collector.c. Updating dependency information for .core_greedy_align.c. Updating dependency information for .core_gapinfo.c. Updating dependency information for .core_blast_util.c. Updating dependency information for .core_blast_traceback.c. Updating dependency information for .core_blast_stat.c. Updating dependency information for .core_blast_setup.c. Updating dependency information for .core_blast_seqsrc.c. Updating dependency information for .core_blast_seg.c. Updating dependency information for .core_blast_psi_priv.c. Updating dependency information for .core_na_ungapped.c. Updating dependency information for .core_blast_psi.c. Updating dependency information for .core_blast_options.c. Updating dependency information for .core_blast_message.c. Updating dependency information for .core_blast_nascan.c. Updating dependency information for .core_blast_nalookup.c. Updating dependency information for .core_blast_aascan.c. Updating dependency information for .core_blast_aalookup.c. Updating dependency information for .core_blast_lookup.c. Updating dependency information for .core_blast_kappa.c. Updating dependency information for .core_blast_itree.c. Updating dependency information for .core_blast_hspstream.c. Updating dependency information for .core_blast_hits.c. Updating dependency information for .core_blast_gapalign.c. Updating dependency information for .core_blast_filter.c. Updating dependency information for .core_blast_extend.c. Updating dependency information for .core_blast_engine.c. Updating dependency information for .core_blast_diagnostics.c. Updating dependency information for .core_aa_ungapped.c. rm .core_blast_nascan.c .core_blast_diagnostics.c .core_split_query.c .core_hspfilter_collector.c .core_blast_program.c .core_blast_query_info.c .core_blast_traceback_mt_priv.c .core_jumper.c .core_blast_util.c .core_blast_aascan.c .core_blast_dynarray.c .core_blast_posit.c .core_na_ungapped.c .core_blast_stat.c .core_blast_hits.c .core_blast_traceback.c .core_phi_gapalign.c .core_matrix_freq_ratios.c .core_ncbi_std.c .core_boost_erf.c .core_link_hsps.c .core_phi_lookup.c .core_blast_message.c .core_blast_extend.c .core_blast_lookup.c .core_blast_psi.c .core_blast_itree.c .core_spliced_hits.c .core_blast_gapalign.c .core_pattern.c .core_blast_tune.c .core_blast_hspstream.c .core_blast_psi_priv.c .core_phi_extend.c .core_lookup_wrap.c .core_blast_filter.c .core_blast_sw.c .core_index_ungapped.c .core_blast_encoding.c .core_aa_ungapped.c .core_hspfilter_mapper.c .core_blast_engine.c .core_hspfilter_culling.c .core_gencode_singleton.c .core_blast_seqsrc.c .core_blast_options.c .core_blast_parameters.c .core_blast_setup.c .core_blast_aalookup.c .core_ncbi_math.c .core_greedy_align.c .core_blast_hspstream_mt_utils.c .core_hspfilter_besthit.c .core_gapinfo.c .core_lookup_util.c .core_blast_seg.c .core_blast_nalookup.c .core_blast_kappa.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c echo '#include "/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include 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-fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blastIn file included from .core_blast_util.c:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_util.c: In function 'BlastProgram2Number': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return 0; ^~~~~~ In file included from .core_link_hsps.c:1: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/link_hsps.c: In function 's_FwdCompareHSPs': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/link_hsps.c:133:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/../core/link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (h1->query.offset < h2->query.offset) ^~ +/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_aa_ungapped.c -o .core_aa_ungapped.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_diagnostics.c -o .core_blast_diagnostics.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_engine.c -o .core_blast_engine.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_extend.c -o .core_blast_extend.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_phi_gapalign.c -o .core_phi_gapalign.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_phi_lookup.c -o .core_phi_lookup.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_parameters.c -o .core_blast_parameters.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_posit.c -o .core_blast_posit.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_program.c -o .core_blast_program.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_query_info.c -o .core_blast_query_info.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_tune.c -o .core_blast_tune.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_sw.c -o .core_blast_sw.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_dynarray.c -o .core_blast_dynarray.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_split_query.c -o .core_split_query.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_gencode_singleton.c -o .core_gencode_singleton.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_index_ungapped.c -o .core_index_ungapped.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_boost_erf.c -o .core_boost_erf.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_jumper.c -o .core_jumper.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include .core_spliced_hits.c -o .core_spliced_hits.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_diagnostics.c .core_blast_aascan.c .core_blast_itree.c .core_phi_gapalign.c .core_boost_erf.c .core_split_query.c .core_blast_psi.c .core_blast_hspstream_mt_utils.c .core_blast_psi_priv.c .core_blast_seqsrc.c .core_blast_filter.c .core_hspfilter_culling.c .core_lookup_util.c .core_blast_parameters.c .core_gencode_singleton.c .core_blast_options.c .core_blast_traceback.c .core_blast_seg.c .core_blast_kappa.c .core_blast_encoding.c .core_greedy_align.c .core_blast_sw.c .core_blast_traceback_mt_priv.c .core_gapinfo.c .core_blast_dynarray.c .core_blast_posit.c .core_blast_hits.c .core_matrix_freq_ratios.c .core_blast_extend.c .core_spliced_hits.c .core_blast_lookup.c .core_index_ungapped.c .core_ncbi_std.c .core_blast_gapalign.c .core_blast_query_info.c .core_blast_message.c .core_lookup_wrap.c .core_hspfilter_besthit.c .core_hspfilter_mapper.c .core_blast_nalookup.c .core_phi_extend.c .core_jumper.c .core_blast_hspstream.c .core_link_hsps.c .core_blast_stat.c .core_blast_setup.c .core_na_ungapped.c .core_aa_ungapped.c .core_blast_aalookup.c .core_ncbi_math.c .core_blast_engine.c .core_blast_program.c .core_blast_nascan.c .core_hspfilter_collector.c .core_phi_lookup.c .core_blast_util.c .core_pattern.c .core_blast_tune.c gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -C proteinkmer -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:91: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:98: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (hits.size() < numHashes) ~~~~~~~~~~~~^~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (last_oid == *i) ~~~~~~~~~^~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: *** No rule to make target '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -C format -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/object_manager.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbimisc.hpp:1122:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/tempstr.hpp:38, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/objmgr/object_manager.hpp:45, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbimisc.hpp:1122:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp:49: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp:51: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'rapidjson::GenericValue* rapidjson::GenericValue::Erase(rapidjson::GenericValue::ConstValueIterator, rapidjson::GenericValue::ConstValueIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::GenericValue::ValueIterator = rapidjson::GenericValue >*; rapidjson::GenericValue::ConstValueIterator = const rapidjson::GenericValue >*]': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1433:73: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:1702:21: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class rapidjson::GenericValue >' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] std::memmove(pos, last, static_cast(End() - last) * sizeof(GenericValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: 'class rapidjson::GenericValue >' declared here class GenericValue { ^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'rapidjson::GenericValue::MemberIterator rapidjson::GenericValue::EraseMember(rapidjson::GenericValue::ConstMemberIterator, rapidjson::GenericValue::ConstMemberIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::GenericValue::MemberIterator = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >*; rapidjson::GenericValue::ConstMemberIterator = const rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >*]': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1761:80: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:1498:21: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >' with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] std::memmove(&*pos, &*last, static_cast(MemberEnd() - last) * sizeof(Member)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >' declared here struct GenericMember { ^~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetObjectRaw(rapidjson::GenericValue::Member*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::GenericValue::Member = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >; rapidjson::SizeType = unsigned int]': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2501:9: required from 'bool rapidjson::GenericDocument::EndObject(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1721:18: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(rapidjson::GenericReader::IterativeParsingState, rapidjson::GenericReader::Token, rapidjson::GenericReader::IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:22: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2295:85: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2024:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] std::memcpy(m, members, count * sizeof(Member)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} declared here struct GenericMember { ^~~~~~~~~~~~~ In file included from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetArrayRaw(rapidjson::GenericValue*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::SizeType = unsigned int]': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2509:9: required from 'bool rapidjson::GenericDocument::EndArray(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1751:18: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(rapidjson::GenericReader::IterativeParsingState, rapidjson::GenericReader::Token, rapidjson::GenericReader::IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:22: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2295:85: required from here /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2009:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'class rapidjson::GenericValue >' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] std::memcpy(e, values, count * sizeof(GenericValue)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: 'class rapidjson::GenericValue >' declared here class GenericValue { ^~~~~~~~~~~~ /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:122:28: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (m_ResultsMap.size() != currNum) ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_async_format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -C blastinput -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE 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-Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include 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-I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.blastinput.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C unit_test -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /usr/local/bin/gmake -C demo -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C blast_sra_input -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /usr/local/bin/gmake -C igblast -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/igblast/igblast.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.igblast.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -C gumbel_params -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /usr/local/bin/gmake -C unit_tests -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -C blast_format -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /usr/local/bin/gmake -C blastdb -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /usr/local/bin/gmake -C seqdb_reader -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Nothing to be done for 'mark-as-disabled_r'. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /usr/local/bin/gmake -C api -w -j5 --jobserver-auth=11,12 all_r || exit 5 gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[9]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: warning: -jN forced in submake: disabling jobserver mode. gmake[9]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: warning: -jN forced in submake: disabling jobserver mode. gmake[9]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j5 --jobserver-auth=15,16 mark-as-disabled gmake[9]: warning: -jN forced in submake: disabling jobserver mode. gmake[9]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: warning: -jN forced in submake: disabling jobserver mode. gmake[9]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: warning: -jN forced in submake: disabling jobserver mode. gmake[9]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j5 --jobserver-auth=15,16 mark-as-disabled gmake[9]: warning: -jN forced in submake: disabling jobserver mode. gmake[9]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[9]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/blast' /usr/local/bin/gmake -C segmask -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j5 --jobserver-auth=9,10 export-headers gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/segmask/segmask.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -C align -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/align' /usr/local/bin/gmake -C structure -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/structure' /usr/local/bin/gmake -C ms -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/ms' /usr/local/bin/gmake -C gnomon -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/gnomon' /usr/local/bin/gmake -C tree -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/tree' /usr/local/bin/gmake -C phy_tree -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/phy_tree' /usr/local/bin/gmake -C seqqa -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/seqqa' /usr/local/bin/gmake -C cobalt -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/cobalt' /usr/local/bin/gmake -C text -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/text' /usr/local/bin/gmake -C volume_merge -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/volume_merge' /usr/local/bin/gmake -C primer -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/primer' /usr/local/bin/gmake -C id_mapper -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/algo' /usr/local/bin/gmake -C misc -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/clog/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/grid_cgi/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/xmlwrapp/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/eutils_client/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/hydra_client/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/hydra_client/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/eutils_client/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/grid_cgi/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/clog/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/discrepancy/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/xmlreaders/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/hgvs/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/xmlreaders/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/hgvs/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/netstorage/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/xmlwrapp/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/biosample_util/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/data_loaders_util/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/netstorage/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/biosample_util/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/lapackwrapp/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/data_loaders_util/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/lapackwrapp/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/grpc_integration/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/pmcidconv_client/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/fix_pub/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/cgi_redirect/Makefile.in` /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT clog/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/discrepancy/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/cgi_redirect/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT grid_cgi/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT xmlwrapp/Makefile test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/grpc_integration/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/grpc_integration/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/fix_pub/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/misc/fix_pub/Makefile.in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT eutils_client/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT hydra_client/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/clog/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT discrepancy/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT xmlreaders/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT hgvs/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT biosample_util/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT data_loaders_util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/hgvs/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT pmcidconv_client/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT grpc_integration/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT fix_pub/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/fix_pub/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/grpc_integration/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile /usr/local/bin/gmake -C third_party -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/third_party' /usr/local/bin/gmake -C third_party_static -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/third_party_static' /usr/local/bin/gmake -C clog -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/clog' /usr/local/bin/gmake -C grid_cgi -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/grid_cgi' /usr/local/bin/gmake -C xmlwrapp -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' /usr/local/bin/gmake -C eutils_client -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/eutils_client' /usr/local/bin/gmake -C hydra_client -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/hydra_client' /usr/local/bin/gmake -C discrepancy -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/discrepancy' /usr/local/bin/gmake -C xmlreaders -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/xmlreaders' /usr/local/bin/gmake -C hgvs -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/hgvs' /usr/local/bin/gmake -C netstorage -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/netstorage' /usr/local/bin/gmake -C jsonwrapp -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. /usr/local/bin/gmake -C test -w -j5 --jobserver-auth=9,10 all_r || exit 5 gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: *** No rule to make target '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: *** No rule to make target '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp10" due to unmet requirements gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' /usr/local/bin/gmake -C biosample_util -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/biosample_util' /usr/local/bin/gmake -C data_loaders_util -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' /usr/local/bin/gmake -C lapackwrapp -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' /usr/local/bin/gmake -C pmcidconv_client -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client' /usr/local/bin/gmake -C grpc_integration -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/grpc_integration' /usr/local/bin/gmake -C fix_pub -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/fix_pub' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C cgi_redirect -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/misc' /usr/local/bin/gmake -C gui -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/gui' /usr/local/bin/gmake -C app -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn2asn/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn2fasta/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn2flat/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asnval/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn_cleanup/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn_cleanup/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn_cleanup/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn2asn/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn2fasta/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asnval/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/id1_fetch/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/asn2flat/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/convert_seq/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/id1_fetch/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/id1_fetch/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/nmer_repeats/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/objmgr/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/gi2taxid/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/objmgr/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/objmgr/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/netschedule/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/grid/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/nmer_repeats/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/nmer_repeats/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/netstorage/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/convert_seq/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/convert_seq/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/igblast/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/netstorage/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/netstorage/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/vecscreen/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/igblast/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/igblast/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/gi2taxid/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/gi2taxid/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/netschedule/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/netschedule/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/vecscreen/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/vecscreen/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/grid/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/grid/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/agpconvert/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/id2_fetch/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/agp_validate/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/objextract/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/agp_validate/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/agp_validate/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/id2_fetch/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/id2_fetch/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/agpconvert/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/agpconvert/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/bdb_env_keeper/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/nw_aligner/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/objextract/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/objextract/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/speedtest/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/idmapper/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/idmapper/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/idmapper/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/speedtest/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/speedtest/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/formatguess/Makefile.in` /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/multireader/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/nw_aligner/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/nw_aligner/Makefile.in test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/formatguess/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/formatguess/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/read_blast_result/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/bdb_env_keeper/Makefile.in || /bin/cp -p /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/bdb_env_keeper/Makefile.in /bin/mkdir -p `/usr/bin/dirname /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/splign/Makefile.in` test -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/read_blast_result/Makefile.in || /bin/cp -p 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/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/multireader/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/idmapper/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/agp_validate/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT hfilter/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT annotwriter/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/read_blast_result/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/splign/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT compart/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/annotwriter/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/hfilter/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/compart/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT streamtest/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT lds2_indexer/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/lds2_indexer/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/streamtest/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT discrepancy_report/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT biosample_chk/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT gap_stats/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT table2asn/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT srcchk/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/discrepancy_report/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/table2asn/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT tableval/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/srcchk/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/gap_stats/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/biosample_chk/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ncbi_encrypt/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT ssub_fork/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/tableval/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT asn_cache/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT magicblast/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT multipattern/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/multipattern/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/ssub_fork/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/asn_cache/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT prt2fsm/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT pub_report/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT prot_match/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/magicblast/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT gff_deconcat/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT sub_fuse/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/prt2fsm/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/prot_match/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT split_cache/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT wig2table/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/pub_report/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/sub_fuse/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT netcache/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT rmblastn/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/gff_deconcat/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT dblb/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/wig2table/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT tls/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/netcache/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/tls/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT idfetch/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/rmblastn/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dblb/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/split_cache/Makefile /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile config.status: creating /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/idfetch/Makefile /usr/local/bin/gmake -C asn2asn -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/asn2asn' /usr/local/bin/gmake -C asn2fasta -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/asn2fasta' /usr/local/bin/gmake -C asn2flat -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/asn2flat' /usr/local/bin/gmake -C asnval -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/asnval' /usr/local/bin/gmake -C asn_cleanup -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/asn_cleanup' /usr/local/bin/gmake -C id1_fetch -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/id1_fetch' /usr/local/bin/gmake -C blast -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/legacy_blast.pl /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/legacy_blast.pl /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/update_blastdb.pl /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/update_blastdb.pl /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast -w -j5 --jobserver-auth=13,14 all gmake[8]: warning: -jN forced in submake: disabling jobserver mode. gmake[8]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/get_species_taxids.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/get_species_taxids.sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[8]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=blast_app_util -w -j5 --jobserver-auth=11,12 export-headers gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Nothing to be done for 'export-headers'. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=blast_app_util -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blast_app_util.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=blastp -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blastp_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastp_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastp strip blastp /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastp /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastp gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=blastn -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blastn_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastn_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastn strip blastn /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastn gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=blastx -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blastx_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastx_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastx strip blastx /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastx /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastx gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blastx_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastx_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastx strip blastx /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastx /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastx gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=tblastn -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/tblastn_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O tblastn_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o tblastn strip tblastn /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/tblastn gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=tblastx -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/tblastx_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O tblastx_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o tblastx strip tblastx /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/tblastx gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=psiblast -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/psiblast_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O psiblast_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o psiblast strip psiblast /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/psiblast gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=rpsblast -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/rpsblast_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O rpsblast_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o rpsblast strip rpsblast /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/rpsblast gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=rpstblastn -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/rpstblastn_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O rpstblastn_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o rpstblastn strip rpstblastn /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/rpstblastn gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=blast_formatter -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blast_formatter.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blast_formatter.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blast_formatter strip blast_formatter /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blast_formatter gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=blast_report -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blast_report.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blast_report.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blast_report strip blast_report /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_report /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blast_report gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=deltablast -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/deltablast_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O deltablast_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o deltablast strip deltablast /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/deltablast gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast TMPL=seedtop -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/seedtop_app.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O seedtop_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o seedtop strip seedtop /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/seedtop gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -C convert_seq -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/convert_seq' /usr/local/bin/gmake -C nmer_repeats -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/nmer_repeats' /usr/local/bin/gmake -C objmgr -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/objmgr' /usr/local/bin/gmake -C gi2taxid -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/gi2taxid' /usr/local/bin/gmake -C netschedule -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/netschedule' /usr/local/bin/gmake -C grid -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/grid' /usr/local/bin/gmake -C netstorage -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/netstorage' /usr/local/bin/gmake -C igblast -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/igblast' /usr/local/bin/gmake -C winmasker -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker TMPL=winmasker -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker/main.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o win_mask_app.o win_mask_sdust_masker.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o windowmasker strip windowmasker /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/windowmasker gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -C dustmasker -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/dustmasker TMPL=dustmasker -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/dustmasker/main.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O main.o dust_mask_app.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o dustmasker strip dustmasker /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/dustmasker gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -C segmasker -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/segmasker TMPL=segmasker -w -j5 --jobserver-auth=9,10 all gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/segmasker/segmasker.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O segmasker.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o segmasker strip segmasker /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/segmasker gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/segmasker/segmasker.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O segmasker.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o segmasker strip segmasker /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/segmasker gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -C blastdb -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[6]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[6]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb TMPL=blastdbcmd -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdbcmd.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcmd.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdbcmd strip blastdbcmd /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastdbcmd gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb TMPL=makeblastdb -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/makeblastdb.cpp. Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/masked_range_set.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O makeblastdb.o masked_range_set.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o makeblastdb strip makeblastdb /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/makeblastdb gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdb_aliastool.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdb_aliastool strip blastdb_aliastool /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb TMPL=blastdbcheck -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdbcheck.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcheck.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdbcheck strip blastdbcheck /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastdbcheck gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb TMPL=convert2blastmask -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/convert2blastmask.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O convert2blastmask.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -L/usr/local/lib -llzo2 -lz -L/usr/local/lib -llmdb -lpthread -lm -lpthread -o convert2blastmask strip convert2blastmask /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/convert2blastmask gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb TMPL=blastdbcp -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdbcp.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdbcp.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjedit -lxobjread -lvariation -lcreaders -lsubmit -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdbcp strip blastdbcp /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastdbcp gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb TMPL=makeprofiledb -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/makeprofiledb.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O makeprofiledb.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o makeprofiledb strip makeprofiledb /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/makeprofiledb gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb TMPL=blastdb_convert -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdb_convert.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdb_convert.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdb_convert strip blastdb_convert /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_convert /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastdb_convert gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb TMPL=blastdb_path -w -j5 --jobserver-auth=11,12 all gmake[7]: warning: -jN forced in submake: disabling jobserver mode. gmake[7]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdb_path.cpp. /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -pipe -O2 -fno-strict-aliasing -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include -I/usr/local/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /usr/bin/g++ -std=gnu++11 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O blastdb_path.o -L/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L/usr/local/lib -llmdb -lpthread -lz -lbz2 -L/usr/local/lib -llzo2 -lz -lm -lpthread -o blastdb_path strip blastdb_path /bin/sh /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_path /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/blastdb_path gmake[7]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[6]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -C vecscreen -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/vecscreen' /usr/local/bin/gmake -C agpconvert -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/agpconvert' /usr/local/bin/gmake -C id2_fetch -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/id2_fetch' /usr/local/bin/gmake -C agp_validate -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/agp_validate' /usr/local/bin/gmake -C objextract -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/objextract' /usr/local/bin/gmake -C bdb_env_keeper -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /usr/local/bin/gmake -C nw_aligner -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/nw_aligner' /usr/local/bin/gmake -C speedtest -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/speedtest' /usr/local/bin/gmake -C idmapper -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/idmapper' /usr/local/bin/gmake -C formatguess -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/formatguess' /usr/local/bin/gmake -C multireader -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/multireader' /usr/local/bin/gmake -C read_blast_result -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/read_blast_result' /usr/local/bin/gmake -C splign -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/splign' /usr/local/bin/gmake -C hfilter -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/hfilter' /usr/local/bin/gmake -C annotwriter -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/annotwriter' /usr/local/bin/gmake -C compart -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/compart' /usr/local/bin/gmake -C streamtest -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/streamtest' /usr/local/bin/gmake -C lds2_indexer -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/lds2_indexer' /usr/local/bin/gmake -C discrepancy_report -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/discrepancy_report' /usr/local/bin/gmake -C biosample_chk -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/biosample_chk' /usr/local/bin/gmake -C gap_stats -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/gap_stats' /usr/local/bin/gmake -C table2asn -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/table2asn' /usr/local/bin/gmake -C srcchk -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/srcchk' /usr/local/bin/gmake -C tableval -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/tableval' /usr/local/bin/gmake -C ncbi_encrypt -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /usr/local/bin/gmake -C ssub_fork -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/ssub_fork' /usr/local/bin/gmake -C asn_cache -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/asn_cache' /usr/local/bin/gmake -C magicblast -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/magicblast' /usr/local/bin/gmake -C multipattern -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/multipattern' /usr/local/bin/gmake -C prt2fsm -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/prt2fsm' /usr/local/bin/gmake -C pub_report -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/pub_report' /usr/local/bin/gmake -C prot_match -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/prot_match' /usr/local/bin/gmake -C gff_deconcat -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/gff_deconcat' /usr/local/bin/gmake -C sub_fuse -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/sub_fuse' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C split_cache -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C wig2table -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C netcache -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C rmblastn -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C dblb -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C tls -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C idfetch -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C pubseq_gateway -w -j5 --jobserver-auth=7,8 all_r || exit 5 gmake[5]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' gmake[5]: warning: -jN forced in submake: disabling jobserver mode. gmake[5]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/app' /usr/local/bin/gmake -C sample -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/sample' /usr/local/bin/gmake -C internal -w -j5 --jobserver-auth=5,6 all_r || exit 5 gmake[4]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[4]: warning: -jN forced in submake: disabling jobserver mode. gmake[4]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/internal' gmake[3]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[2]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> ncbi-blast+-2.9.0 depends on package: p5-List-MoreUtils>=0 - not found ===> Installing existing package /packages/All/p5-List-MoreUtils-0.428.txz Installing p5-List-MoreUtils-0.428... `-- Installing p5-Exporter-Tiny-1.002001... `-- Extracting p5-Exporter-Tiny-1.002001: .......... done `-- Installing p5-List-MoreUtils-XS-0.428... `-- Extracting p5-List-MoreUtils-XS-0.428: ....... done Extracting p5-List-MoreUtils-0.428: .......... done ===> ncbi-blast+-2.9.0 depends on package: p5-List-MoreUtils>=0 - found ===> Returning to build of ncbi-blast+-2.9.0 ===> ncbi-blast+-2.9.0 depends on package: p5-JSON>=0 - not found ===> Installing existing package /packages/All/p5-JSON-2.97.001.txz Installing p5-JSON-2.97.001... Extracting p5-JSON-2.97.001: .......... done ===> ncbi-blast+-2.9.0 depends on package: p5-JSON>=0 - found ===> Returning to build of ncbi-blast+-2.9.0 ===> ncbi-blast+-2.9.0 depends on file: /usr/local/bin/python3.6 - found ===> ncbi-blast+-2.9.0 depends on package: perl5>=5.28.r1<5.29 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for ncbi-blast+-2.9.0 ===> Generating temporary packing list gmake[2]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++' if test -d /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/gbench; then \ gmake -w install-gbench; \ else \ gmake -w install-toolkit; \ fi gmake[3]: Entering directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++' /bin/rm -rf /construction/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c -d /construction/biology/ncbi-blast+/stage/usr/local/bin /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++ /construction/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/* /construction/biology/ncbi-blast+/stage/usr/local/bin /usr/bin/install -c -m 644 /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/*.* /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++ if test -d /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/ncbi; then \ cp -pPR /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/ncbi /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++/; \ fi rm -f /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++/lib*-static.a cd /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++ && \ for x in *.a; do \ /bin/ln -s "$x" "`/usr/bin/basename \"$x\" .a`-static.a"; \ done for d in /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/include /construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc; do \ cd $d && find * -name .svn -prune -o -print | \ cpio -pd /construction/biology/ncbi-blast+/stage/usr/local/include/ncbi-tools++ ; \ done 56680 blocks 73 blocks gmake[3]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++' gmake[2]: Leaving directory '/construction/biology/ncbi-blast+/ncbi-blast-2.9.0+-src/c++' /usr/bin/strip /construction/biology/ncbi-blast+/stage/usr/local/lib/ncbi-tools++/*.so ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for ncbi-blast+-2.9.0 file sizes/checksums [4263]: .......... done packing files [4263]: .......... done packing directories [1]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 7 JUL 2019 at 06:42:52 UTC Duration: 02:16:17