=> Building biology/avida Started : Sunday, 7 JUL 2019 at 04:00:43 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.83.g49866-DEVELOPMENT #40: Sun Jun 30 03:00:04 PDT 2019 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.4-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.4-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for avida-2.12.4: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/avida XDG_CONFIG_HOME=/construction/biology/avida HOME=/construction/biology/avida TMPDIR="/tmp" PATH=/construction/biology/avida/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/avida XDG_CONFIG_HOME=/construction/biology/avida HOME=/construction/biology/avida TMPDIR="/tmp" PATH=/construction/biology/avida/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/avida/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" CMAKE_BUILD_TYPE="release" OSREL=5.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/avida" EXAMPLESDIR="share/examples/avida" DATADIR="share/avida" WWWDIR="www/avida" ETCDIR="etc/avida" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avida DOCSDIR=/usr/local/share/doc/avida EXAMPLESDIR=/usr/local/share/examples/avida WWWDIR=/usr/local/www/avida ETCDIR=/usr/local/etc/avida -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.4 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.28.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500400 OSVERSION=9999999 OSREL=5.4 _OSRELEASE=5.4-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> avida-2.12.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz Installing pkg-1.11.1... Extracting pkg-1.11.1: .......... done ===> avida-2.12.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of avida-2.12.4 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building => SHA256 Checksum OK for avida-2.12.4-src.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building ===> Extracting for avida-2.12.4 ===> NOTICE: The avida port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building => SHA256 Checksum OK for avida-2.12.4-src.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for avida-2.12.4 ===> Applying ports patches for avida-2.12.4 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> avida-2.12.4 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.14.5.txz Installing cmake-3.14.5... `-- Installing curl-7.65.1... | `-- Installing ca_root_nss-3.44... | `-- Extracting ca_root_nss-3.44: ........ done | `-- Installing libnghttp2-1.39.1... | `-- Extracting libnghttp2-1.39.1: .......... done | `-- Installing libressl-2.9.2... | `-- Extracting libressl-2.9.2: .......... done `-- Extracting curl-7.65.1: .......... done `-- Installing expat-2.2.6_1... `-- Extracting expat-2.2.6_1: .......... done `-- Installing jsoncpp-1.8.1_6... `-- Extracting jsoncpp-1.8.1_6: .......... done `-- Installing libarchive-3.3.3,1... | `-- Installing liblz4-1.9.1,1... | `-- Extracting liblz4-1.9.1,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.3,1: .......... done `-- Installing libuv-1.29.1... `-- Extracting libuv-1.29.1: .......... done `-- Installing ncurses-6.1.20190525... `-- Extracting ncurses-6.1.20190525: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.14.5: .......... done Message from ca_root_nss-3.44: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> avida-2.12.4 depends on file: /usr/local/bin/cmake - found ===> Returning to build of avida-2.12.4 ===> avida-2.12.4 depends on file: /usr/local/lib/libncurses.so.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for avida-2.12.4 ===> Performing out-of-source build /bin/mkdir -p /construction/biology/avida/.build -- The C compiler identification is GNU 8.1.0 -- The CXX compiler identification is GNU 8.1.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_FUSED_MADD -- Performing Test HAVE_FUSED_MADD - Success -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/biology/avida/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for avida-2.12.4 /usr/local/bin/cmake -S/construction/biology/avida/avida-2.12.4-src -B/construction/biology/avida/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/avida/.build/CMakeFiles /construction/biology/avida/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- avida-core/CMakeFiles/avidacore.dir/all --- --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- /usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make libs/apto/src/CMakeFiles/aptostatic.dir/depend --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- /usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make libs/apto/src/CMakeFiles/aptoshared.dir/depend --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- /usr/bin/make -f libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build.make libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/depend --- avida-core/CMakeFiles/avidacore.dir/all --- /usr/bin/make -f avida-core/CMakeFiles/avidacore.dir/build.make avida-core/CMakeFiles/avidacore.dir/depend --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- --- libs/apto/src/CMakeFiles/aptostatic.dir/depend --- cd /construction/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/avida/avida-2.12.4-src /construction/biology/avida/avida-2.12.4-src/libs/apto/src /construction/biology/avida/.build /construction/biology/avida/.build/libs/apto/src /construction/biology/avida/.build/libs/apto/src/CMakeFiles/aptostatic.dir/DependInfo.cmake --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/depend --- cd /construction/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/avida/avida-2.12.4-src /construction/biology/avida/avida-2.12.4-src/libs/apto/src /construction/biology/avida/.build /construction/biology/avida/.build/libs/apto/src /construction/biology/avida/.build/libs/apto/src/CMakeFiles/aptoshared.dir/DependInfo.cmake --- avida-core/CMakeFiles/avidacore.dir/all --- --- avida-core/CMakeFiles/avidacore.dir/depend --- cd /construction/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/avida/avida-2.12.4-src /construction/biology/avida/avida-2.12.4-src/avida-core /construction/biology/avida/.build /construction/biology/avida/.build/avida-core /construction/biology/avida/.build/avida-core/CMakeFiles/avidacore.dir/DependInfo.cmake --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- Scanning dependencies of target aptoshared /usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make libs/apto/src/CMakeFiles/aptoshared.dir/build --- libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o --- --- libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o --- --- libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o --- [ 0%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/FileSystem.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/depend --- --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- Scanning dependencies of target aptostatic /usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make libs/apto/src/CMakeFiles/aptostatic.dir/build --- libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o --- [ 0%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/FileSystem.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/FileSystem.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- cd /construction/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/avida/avida-2.12.4-src /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4 /construction/biology/avida/.build /construction/biology/avida/.build/libs/tcmalloc-1.4 /construction/biology/avida/.build/libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/DependInfo.cmake --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/FileSystem.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:34: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/FileSystem.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- Scanning dependencies of target tcmalloc-1.4 /usr/bin/make -f libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build.make libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o --- [ 1%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.cc --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:34: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/FileSystem.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:43:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:83:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:43:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc:83:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o --- [ 2%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o --- [ 2%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/central_freelist.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/RefCount.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/RefCount.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/RefCount.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o --- [ 2%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/Thread.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc:33:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc:33:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o --- [ 3%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/platform/Platform.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc:33:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc:35:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc:54:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc:60:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(UNIX) && defined(_SC_NPROCESSORS_ONLN) ^~~~~~~~~~~~~~~~~~ --- libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o --- [ 3%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o --- [ 4%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:40: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/all --- Scanning dependencies of target avidacore --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:47: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/all --- /usr/bin/make -f avida-core/CMakeFiles/avidacore.dir/build.make avida-core/CMakeFiles/avidacore.dir/build --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:47: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:50: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:52: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/all --- --- avida-core/CMakeFiles/avidacore.dir/source/actions/cActionLibrary.cc.o --- [ 4%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/actions/cActionLibrary.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/actions/cActionLibrary.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Feedback.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/common.cc.o --- [ 5%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/common.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/common.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/common.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/internal_logging.cc.o --- [ 5%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/internal_logging.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/internal_logging.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/internal_logging.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/malloc_extension.cc.o --- [ 6%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/malloc_extension.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/malloc_extension.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/page_heap.cc.o --- [ 6%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/page_heap.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/page_heap.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/page_heap.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/span.cc.o --- [ 7%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/span.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/span.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/span.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- --- libs/apto/src/CMakeFiles/aptostatic.dir/core/RefCount.cc.o --- [ 8%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/RefCount.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/RefCount.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/RefCount.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/RefCount.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/spinlock.cc.o --- --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- --- libs/apto/src/CMakeFiles/aptostatic.dir/core/Thread.cc.o --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- [ 8%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/spinlock.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/spinlock.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/spinlock.cc --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- [ 8%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/Thread.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/Thread.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/static_vars.cc.o --- --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- [ 9%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/static_vars.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/static_vars.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/static_vars.cc --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc:33:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/core/Thread.cc:33:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- --- libs/apto/src/CMakeFiles/aptostatic.dir/platform/Platform.cc.o --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o --- [ 9%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- [ 10%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/platform/Platform.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/platform/Platform.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc:33:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc:35:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc:54:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/platform/Platform.cc:60:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(UNIX) && defined(_SC_NPROCESSORS_ONLN) ^~~~~~~~~~~~~~~~~~ --- libs/apto/src/CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o --- [ 10%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/system-alloc.cc.o --- [ 11%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/system-alloc.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/system-alloc.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/system-alloc.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- --- libs/apto/src/CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o --- [ 12%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o cd /construction/biology/avida/.build/libs/apto/src && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:40: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:47: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:47: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:50: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:52: /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/src/../include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/tcmalloc.cc.o --- [ 12%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/tcmalloc.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/tcmalloc.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/tcmalloc.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/thread_cache.cc.o --- [ 13%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/thread_cache.cc.o cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/thread_cache.cc.o -c /construction/biology/avida/avida-2.12.4-src/libs/tcmalloc-1.4/src/thread_cache.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/all --- --- avida-core/CMakeFiles/avidacore.dir/source/actions/DriverActions.cc.o --- [ 14%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/actions/DriverActions.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/actions/DriverActions.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/DriverActions.cc:28: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/actions/EnvironmentActions.cc.o --- [ 15%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/actions/EnvironmentActions.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/actions/EnvironmentActions.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- --- lib/libtcmalloc-1.4.a --- --- avida-core/CMakeFiles/avidacore.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Feedback.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- [ 16%] Linking CXX static library ../../lib/libtcmalloc-1.4.a cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/local/bin/cmake -P CMakeFiles/tcmalloc-1.4.dir/cmake_clean_target.cmake cd /construction/biology/avida/.build/libs/tcmalloc-1.4 && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/tcmalloc-1.4.dir/link.txt --verbose=1 --- avida-core/CMakeFiles/avidacore.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:28: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/SmartPtr.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- /usr/bin/ar qc ../../lib/libtcmalloc-1.4.a CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o CMakeFiles/tcmalloc-1.4.dir/src/common.cc.o CMakeFiles/tcmalloc-1.4.dir/src/internal_logging.cc.o CMakeFiles/tcmalloc-1.4.dir/src/malloc_extension.cc.o CMakeFiles/tcmalloc-1.4.dir/src/page_heap.cc.o CMakeFiles/tcmalloc-1.4.dir/src/span.cc.o CMakeFiles/tcmalloc-1.4.dir/src/spinlock.cc.o CMakeFiles/tcmalloc-1.4.dir/src/static_vars.cc.o CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o CMakeFiles/tcmalloc-1.4.dir/src/system-alloc.cc.o CMakeFiles/tcmalloc-1.4.dir/src/tcmalloc.cc.o CMakeFiles/tcmalloc-1.4.dir/src/thread_cache.cc.o --- avida-core/CMakeFiles/avidacore.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- /usr/bin/ranlib ../../lib/libtcmalloc-1.4.a --- avida-core/CMakeFiles/avidacore.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/EnvironmentActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/all --- [ 16%] Built target tcmalloc-1.4 --- avida-core/CMakeFiles/avidacore.dir/all --- --- avida-core/CMakeFiles/avidacore.dir/source/actions/LandscapeActions.cc.o --- [ 16%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/actions/LandscapeActions.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/actions/LandscapeActions.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:30: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:30: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/LandscapeActions.cc:48: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/tAnalyzeJobBatch.h:33:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/actions/PopulationActions.cc.o --- [ 17%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/actions/PopulationActions.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/actions/PopulationActions.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Feedback.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:32: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PopulationActions.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/actions/PrintActions.cc.o --- [ 17%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/actions/PrintActions.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/actions/PrintActions.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:29: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:29: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- libs/apto/src/CMakeFiles/aptoshared.dir/all --- --- lib/libapto.so --- [ 17%] Linking CXX shared library ../../../lib/libapto.so cd /construction/biology/avida/.build/libs/apto/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/aptoshared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -L/usr/local/lib -Wl,-rpath=/usr/local/lib -shared -Wl,-soname,libapto.so -o ../../../lib/libapto.so CMakeFiles/aptoshared.dir/core/FileSystem.cc.o CMakeFiles/aptoshared.dir/core/RefCount.cc.o CMakeFiles/aptoshared.dir/core/Thread.cc.o CMakeFiles/aptoshared.dir/platform/Platform.cc.o CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -pthread -pthread c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead [ 18%] Built target aptoshared --- avida-core/CMakeFiles/avidacore.dir/all --- --- avida-core/CMakeFiles/avidacore.dir/source/actions/SaveLoadActions.cc.o --- [ 19%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/actions/SaveLoadActions.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/actions/SaveLoadActions.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Feedback.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/SaveLoadActions.cc:29: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyze.cc.o --- [ 19%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyze.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cAnalyze.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.cc:66: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/tAnalyzeJobBatch.h:33:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- libs/apto/src/CMakeFiles/aptostatic.dir/all --- --- lib/libapto.a --- [ 20%] Linking CXX static library ../../../lib/libapto.a cd /construction/biology/avida/.build/libs/apto/src && /usr/local/bin/cmake -P CMakeFiles/aptostatic.dir/cmake_clean_target.cmake cd /construction/biology/avida/.build/libs/apto/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/aptostatic.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libapto.a CMakeFiles/aptostatic.dir/core/FileSystem.cc.o CMakeFiles/aptostatic.dir/core/RefCount.cc.o CMakeFiles/aptostatic.dir/core/Thread.cc.o CMakeFiles/aptostatic.dir/platform/Platform.cc.o CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o /usr/bin/ranlib ../../../lib/libapto.a [ 20%] Built target aptostatic --- avida-core/CMakeFiles/avidacore.dir/all --- --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeGenotype.cc.o --- [ 21%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeGenotype.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cAnalyzeGenotype.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc.o --- [ 21%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeTreeStats_Gamma.cc.o --- [ 22%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeTreeStats_Gamma.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cAnalyzeTreeStats_Gamma.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeJobQueue.cc.o --- [ 22%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeJobQueue.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cAnalyzeJobQueue.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.cc:32:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeJobWorker.cc.o --- [ 23%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cAnalyzeJobWorker.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cAnalyzeJobWorker.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobWorker.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cGenotypeBatch.cc.o --- [ 23%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cGenotypeBatch.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cGenotypeBatch.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeBatch.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cGenotypeData.cc.o --- [ 24%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cGenotypeData.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cGenotypeData.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cGenotypeData.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cModularityAnalysis.cc.o --- [ 25%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cModularityAnalysis.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cModularityAnalysis.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cModularityAnalysis.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/analyze/cMutationalNeighborhood.cc.o --- [ 25%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/analyze/cMutationalNeighborhood.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/analyze/cMutationalNeighborhood.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cMutationalNeighborhood.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/classification/cBGGenotype.cc.o --- [ 26%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cBGGenotype.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cBGGenotype.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.cc:27: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/classification/cBGGenotypeManager.cc.o --- [ 26%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cBGGenotypeManager.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cBGGenotypeManager.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.cc:28: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/classification/cBioGroup.cc.o --- [ 27%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cBioGroup.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cBioGroup.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBioGroup.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBioGroup.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBioGroup.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/classification/cBioGroupListener.cc.o --- [ 27%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cBioGroupListener.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cBioGroupListener.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBioGroupListener.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/classification/cBioGroupManager.cc.o --- [ 28%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cBioGroupManager.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cBioGroupManager.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBioGroupManager.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/classification/cBioUnit.cc.o --- [ 28%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cBioUnit.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cBioUnit.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBioUnit.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBioUnit.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBioUnit.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/classification/cClassificationManager.cc.o --- [ 29%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cClassificationManager.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cClassificationManager.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cClassificationManager.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotypeManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cClassificationManager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/classification/cGenomeTestMetrics.cc.o --- [ 29%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cGenomeTestMetrics.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cGenomeTestMetrics.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:28: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cGenomeTestMetrics.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/classification/cMutationSteps.cc.o --- [ 30%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cMutationSteps.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cMutationSteps.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cMutationSteps.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/classification/cSexualAncestry.cc.o --- [ 30%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/classification/cSexualAncestry.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/classification/cSexualAncestry.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cSexualAncestry.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cSexualAncestry.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cSexualAncestry.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/core/Avida.cc.o --- [ 31%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/core/Avida.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/core/Avida.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:32: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeGenotype.h:44, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Avida.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/core/Definitions.cc.o --- [ 32%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/core/Definitions.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/core/Definitions.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Definitions.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/core/Genome.cc.o --- [ 32%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/core/Genome.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/core/Genome.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:31: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Genome.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/core/GlobalObject.cc.o --- [ 33%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/core/GlobalObject.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/core/GlobalObject.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/GlobalObject.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/GlobalObject.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/GlobalObject.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/core/Sequence.cc.o --- [ 33%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/core/Sequence.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/core/Sequence.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Sequence.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Sequence.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/core/Version.cc.o --- [ 34%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/core/Version.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/core/Version.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Version.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Version.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Version.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/core/Version.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cCodeLabel.cc.o --- [ 34%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cCodeLabel.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cCodeLabel.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCodeLabel.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCodeLabel.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCodeLabel.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/actions/PrintActions.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc: In member function 'virtual void cActionPrintLineageCounts::Process(cAvidaContext&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/PrintActions.cc:927:33: warning: 'cur_count' may be used uninitialized in this function [-Wmaybe-uninitialized] lineage_label_counts.Set(cur_lineage_label, cur_count + 1); ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cCPUMemory.cc.o --- [ 35%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cCPUMemory.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cCPUMemory.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUMemory.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUMemory.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUMemory.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cCPUStack.cc.o --- [ 35%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cCPUStack.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cCPUStack.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUStack.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cCPUTestInfo.cc.o --- [ 36%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cCPUTestInfo.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cCPUTestInfo.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstLib.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareBase.cc.o --- [ 36%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareBase.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareBase.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:29: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o --- [ 37%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareExperimental.cc.o --- [ 37%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareExperimental.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareExperimental.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareGX.cc.o --- [ 38%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareGX.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareGX.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:20: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareBase.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc: In member function 'void cHardwareBase::doLGTMutation(cAvidaContext&, Avida::Sequence&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:790:11: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.cc:793:9: note: here default: ^~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareExperimental.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'bool cHardwareExperimental::Allocate_Main(cAvidaContext&, int)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:1483:7: warning: this statement may fall through [-Wimplicit-fallthrough=] if (Allocate_Necro(new_size) == true) break; ^~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:1484:5: note: here case ALLOC_METHOD_RANDOM: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'bool cHardwareExperimental::Inst_ModifyDisplay(cAvidaContext&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5643:34: warning: this statement may fall through [-Wimplicit-fallthrough=] this_display->distance = GetRegister(rAX); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5644:9: note: here case 1: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5645:35: warning: this statement may fall through [-Wimplicit-fallthrough=] this_display->direction = GetRegister(rBX); ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5646:9: note: here case 2: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5647:34: warning: this statement may fall through [-Wimplicit-fallthrough=] this_display->thing_id = GetRegister(rCX); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5648:9: note: here case 3: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5649:31: warning: this statement may fall through [-Wimplicit-fallthrough=] this_display->value = GetRegister(rDX); ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5650:9: note: here default: ^~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'bool cHardwareExperimental::Inst_ReadLastSeenDisplay(cAvidaContext&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5675:27: warning: this statement may fall through [-Wimplicit-fallthrough=] setInternalValue(rAX, last_seen.distance, true); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5676:9: note: here case 1: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5677:27: warning: this statement may fall through [-Wimplicit-fallthrough=] setInternalValue(rBX, last_seen.direction, true); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5678:9: note: here case 2: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5679:27: warning: this statement may fall through [-Wimplicit-fallthrough=] setInternalValue(rCX, last_seen.thing_id, true); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5680:9: note: here case 3: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5681:27: warning: this statement may fall through [-Wimplicit-fallthrough=] setInternalValue(rDX, last_seen.value, true); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5682:9: note: here default: ^~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'bool cHardwareExperimental::Inst_ModifySimpDisplay(cAvidaContext&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5704:37: warning: this statement may fall through [-Wimplicit-fallthrough=] m_organism->SetSimpDisplay(0, GetRegister(rAX)); ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5705:9: note: here case 1: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5706:37: warning: this statement may fall through [-Wimplicit-fallthrough=] m_organism->SetSimpDisplay(1, GetRegister(rBX)); ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5707:9: note: here case 2: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5708:37: warning: this statement may fall through [-Wimplicit-fallthrough=] m_organism->SetSimpDisplay(2, GetRegister(rCX)); ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5709:9: note: here default: ^~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'bool cHardwareExperimental::Inst_ReadLastSimpDisplay(cAvidaContext&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5733:27: warning: this statement may fall through [-Wimplicit-fallthrough=] setInternalValue(rAX, last_seen.distance, true); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5734:9: note: here case 1: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5735:27: warning: this statement may fall through [-Wimplicit-fallthrough=] setInternalValue(rBX, last_seen.direction, true); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5736:9: note: here case 2: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5737:27: warning: this statement may fall through [-Wimplicit-fallthrough=] setInternalValue(rCX, last_seen.value, true); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:5738:9: note: here default: ^~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc: In member function 'bool cHardwareExperimental::Inst_RotateNeuronAVRight(cAvidaContext&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareExperimental.cc:3562:60: warning: 'avatar_num' is used uninitialized in this function [-Wuninitialized] int avatar_num = m_threads[m_cur_thread].reg[avatar_num].value; ^~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareCPU.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Allocate_Main(cAvidaContext&, int)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1701:7: warning: this statement may fall through [-Wimplicit-fallthrough=] if (Allocate_Necro(new_size) == true) break; ^~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:1702:5: note: here case ALLOC_METHOD_RANDOM: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc: In member function 'bool cHardwareCPU::Inst_IfFacedBeggarANdNeedsResourceThenDonate(cAvidaContext&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.cc:4617:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareGX.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc: In member function 'bool cHardwareGX::Allocate_Main(cAvidaContext&, int)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:1086:7: warning: this statement may fall through [-Wimplicit-fallthrough=] if (Allocate_Necro(new_size) == true) break; ^~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareGX.cc:1087:5: note: here case ALLOC_METHOD_RANDOM: ^~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareManager.cc.o --- [ 39%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareManager.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareManager.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareSMT.cc.o --- [ 39%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareSMT.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareSMT.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareStatusPrinter.cc.o --- [ 40%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareStatusPrinter.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareStatusPrinter.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareStatusPrinter.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareTransSMT.cc.o --- [ 40%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHardwareTransSMT.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHardwareTransSMT.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:25: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareTransSMT.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cHeadCPU.cc.o --- [ 41%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cHeadCPU.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cHeadCPU.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHeadCPU.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHeadCPU.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHeadCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cInstSet.cc.o --- [ 41%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cInstSet.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cInstSet.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstLib.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:32: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cInstSet.cc:32: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cTestCPU.cc.o --- [ 42%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cTestCPU.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cTestCPU.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/cpu/cTestCPUInterface.cc.o --- [ 42%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/cpu/cTestCPUInterface.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/cpu/cTestCPUInterface.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPUInterface.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/data/Manager.cc.o --- [ 43%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/data/Manager.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/data/Manager.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Manager.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/data/Manager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/drivers/cDefaultAnalyzeDriver.cc.o --- [ 43%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/drivers/cDefaultAnalyzeDriver.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/drivers/cDefaultAnalyzeDriver.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/drivers/cDefaultRunDriver.cc.o --- [ 44%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/drivers/cDefaultRunDriver.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/drivers/cDefaultRunDriver.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:28: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cDefaultRunDriver.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/drivers/cFallbackWorldDriver.cc.o --- [ 44%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/drivers/cFallbackWorldDriver.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/drivers/cFallbackWorldDriver.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cFallbackWorldDriver.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cFallbackWorldDriver.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers/cFallbackWorldDriver.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cAvidaConfig.cc.o --- [ 45%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cAvidaConfig.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cAvidaConfig.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cAvidaConfig.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cAvidaConfig.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cAvidaConfig.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cAvidaConfig.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cAvidaConfig.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthChamber.cc.o --- [ 46%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthChamber.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthChamber.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:35: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:35: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:35: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:35: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:35: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:35: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:35: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:35: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.cc:35: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthDemeHandler.cc.o --- [ 46%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthDemeHandler.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthDemeHandler.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGenomeSizeHandler.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGenomeSizeHandler.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:29: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthDemeHandler.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthEntry.cc.o --- [ 47%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthEntry.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthEntry.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:25: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthGenomeSizeHandler.cc.o --- [ 47%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthGenomeSizeHandler.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthGenomeSizeHandler.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGenomeSizeHandler.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGenomeSizeHandler.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGenomeSizeHandler.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGenomeSizeHandler.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGenomeSizeHandler.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthGlobalHandler.cc.o --- [ 48%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthGlobalHandler.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthGlobalHandler.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGlobalHandler.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGlobalHandler.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGlobalHandler.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGlobalHandler.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGlobalHandler.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthGridLocalHandler.cc.o --- [ 48%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthGridLocalHandler.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthGridLocalHandler.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthGridLocalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthMateSelectHandler.cc.o --- [ 49%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthMateSelectHandler.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthMateSelectHandler.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMateSelectHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthNeighborhoodHandler.cc.o --- [ 49%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthNeighborhoodHandler.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthNeighborhoodHandler.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:26: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthNeighborhoodHandler.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthSelectionHandler.cc.o --- [ 50%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthSelectionHandler.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthSelectionHandler.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthSelectionHandler.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cBirthMatingTypeGlobalHandler.cc.o --- [ 50%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cBirthMatingTypeGlobalHandler.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cBirthMatingTypeGlobalHandler.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:27: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthMatingTypeGlobalHandler.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cContextPhenotype.cc.o --- [ 51%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cContextPhenotype.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cContextPhenotype.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cContextPhenotype.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cDeme.cc.o --- [ 51%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cDeme.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cDeme.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGermline.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGermline.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.cc:21: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cDemeNetwork.cc.o --- [ 52%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cDemeNetwork.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cDemeNetwork.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.cc:25: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cDemeTopologyNetwork.cc.o --- [ 52%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cDemeTopologyNetwork.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cDemeTopologyNetwork.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeTopologyNetwork.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeTopologyNetwork.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeTopologyNetwork.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cDemeCellEvent.cc.o --- [ 53%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cDemeCellEvent.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cDemeCellEvent.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGermline.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGermline.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDemeCellEvent.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cDynamicCount.cc.o --- [ 54%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cDynamicCount.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cDynamicCount.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDynamicCount.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cEnvironment.cc.o --- [ 54%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cEnvironment.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cEnvironment.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/SmartPtr.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cEventList.cc.o --- [ 55%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cEventList.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cEventList.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Feedback.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEventList.cc:29: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cGenomeUtil.cc.o --- [ 55%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cGenomeUtil.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cGenomeUtil.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGenomeUtil.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGenomeUtil.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGenomeUtil.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Feedback.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cUserFeedback.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cInitFile.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGenomeUtil.cc:28: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGenomeUtil.cc:30: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGenomeUtil.cc:30: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cGradientCount.cc.o --- [ 56%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cGradientCount.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cGradientCount.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGradientCount.cc:29: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cInstruction.cc.o --- [ 56%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cInstruction.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cInstruction.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cLandscape.cc.o --- [ 57%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cLandscape.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cLandscape.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cEnvironment.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cLandscape.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cMigrationMatrix.cc.o --- [ 57%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cMigrationMatrix.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cMigrationMatrix.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMigrationMatrix.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMigrationMatrix.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMigrationMatrix.cc:9: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMigrationMatrix.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMigrationMatrix.cc:9: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMigrationMatrix.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMigrationMatrix.cc:9: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMigrationMatrix.cc: In member function 'int cMigrationMatrix::GetProbabilisticDemeID(int, cRandom&, bool)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMigrationMatrix.cc:67:1: warning: control reaches end of non-void function [-Wreturn-type] }; ^ --- avida-core/CMakeFiles/avidacore.dir/source/main/cMutationRates.cc.o --- [ 58%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cMutationRates.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cMutationRates.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/SmartPtr.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cOrganism.cc.o --- [ 58%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cOrganism.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cOrganism.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cOrgMessage.cc.o --- [ 59%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cOrgMessage.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cOrgMessage.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cOrganism.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cOrgMessage.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cOrganism.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cOrgMessage.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgMessage.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cOrgSensor.cc.o --- [ 59%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cOrgSensor.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cOrgSensor.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrgSensor.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cParasite.cc.o --- [ 60%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cParasite.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cParasite.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cParasite.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cOrganism.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc: In member function 'void cOrganism::ReceiveMessage(cOrgMessage&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:1113:11: warning: switch condition has boolean value [-Wswitch-bool] switch(m_world->GetConfig().MESSAGE_RECV_BUFFER_BEHAVIOR.Get()) { ^ --- avida-core/CMakeFiles/avidacore.dir/source/main/cPhenotype.cc.o --- [ 61%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cPhenotype.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cPhenotype.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cOrganism.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc: In member function 'void cOrganism::SetSimpDisplay(int, int)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:224:31: warning: this statement may fall through [-Wimplicit-fallthrough=] m_org_display->distance = value; ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:225:5: note: here case 1: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:226:32: warning: this statement may fall through [-Wimplicit-fallthrough=] m_org_display->direction = value; ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:227:5: note: here case 3: ^~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:228:28: warning: this statement may fall through [-Wimplicit-fallthrough=] m_org_display->value = value; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.cc:229:5: note: here default: ^~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cPhenPlastGenotype.cc.o --- [ 61%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cPhenPlastGenotype.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cPhenPlastGenotype.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cPhenPlastUtil.cc.o --- [ 62%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cPhenPlastUtil.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cPhenPlastUtil.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/classification/cBGGenotype.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:25: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastGenotype.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenPlastUtil.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cPlasticPhenotype.cc.o --- [ 62%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cPlasticPhenotype.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cPlasticPhenotype.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cCPUTestInfo.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.h:33, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPlasticPhenotype.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cPopulation.cc.o --- [ 63%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cPopulation.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cPopulation.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthEntry.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cBirthChamber.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cPopulationCell.cc.o --- [ 63%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cPopulationCell.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cPopulationCell.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationCell.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cPopulationInterface.cc.o --- [ 64%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cPopulationInterface.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cPopulationInterface.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/SmartPtr.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:47:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc: In member function 'virtual int cPopulationInterface::FindAV(bool, bool, int)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulationInterface.cc:1904:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ --- avida-core/CMakeFiles/avidacore.dir/source/main/cPopulation.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc: In member function 'void cPopulation::Inject(const Avida::Genome&, eBioUnitSource, cAvidaContext&, int, double, int, double, bool, int, int, int)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:6284:48: warning: this statement may fall through [-Wimplicit-fallthrough=] cell_id = reaper_queue.PopRear()->GetID(); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:6285:7: note: here default: ^~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc: In member function 'void cPopulation::BuildTimeSlicer()': /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:6574:16: warning: this statement may fall through [-Wimplicit-fallthrough=] schedule = new cConstBurstSchedule(cell_array.GetSize(), m_world->GetConfig().SLICING_BURST_SIZE.Get()); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:6575:5: note: here default: ^~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cReaction.cc.o --- [ 64%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cReaction.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cReaction.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cReaction.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cReactionProcess.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cReaction.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cReactionLib.cc.o --- [ 65%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cReactionLib.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cReactionLib.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cReactionLib.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cReactionResult.cc.o --- [ 65%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cReactionResult.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cReactionResult.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cReactionResult.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cResource.cc.o --- [ 66%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cResource.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cResource.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResource.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cResourceCount.cc.o --- [ 66%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cResourceCount.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cResourceCount.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.cc:27: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cResourceHistory.cc.o --- [ 67%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cResourceHistory.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cResourceHistory.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceHistory.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Feedback.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cUserFeedback.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cInitFile.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceHistory.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceCount.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceHistory.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cResourceLib.cc.o --- [ 68%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cResourceLib.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cResourceLib.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cResourceLib.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cSpatialCountElem.cc.o --- [ 68%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cSpatialCountElem.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cSpatialCountElem.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cSpatialCountElem.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cSpatialResCount.cc.o --- [ 69%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cSpatialResCount.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cSpatialResCount.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cSpatialResCount.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cStats.cc.o --- [ 69%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cStats.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cStats.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cTaskLib.cc.o --- [ 70%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cTaskLib.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cTaskLib.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/main/cStats.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cTaskLib.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/SmartPtr.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cStats.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Provider.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cTaskLib.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cStats.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.h:38, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cStats.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cTaskLib.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:47:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cTaskLib.cc:53:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(FREEBSD) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/main/cWorld.cc.o --- [ 70%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/main/cWorld.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/main/cWorld.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/SmartPtr.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:22: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.cc:29: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/AvidaTools.cc.o --- [ 71%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/AvidaTools.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/AvidaTools.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/AvidaTools.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cArgContainer.cc.o --- [ 71%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cArgContainer.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cArgContainer.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cArgContainer.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Feedback.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cArgContainer.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/cArgSchema.cc.o --- [ 72%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cArgSchema.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cArgSchema.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cArgSchema.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cBitArray.cc.o --- [ 72%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cBitArray.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cBitArray.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cBitArray.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cConstBurstSchedule.cc.o --- [ 73%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cConstBurstSchedule.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cConstBurstSchedule.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cConstBurstSchedule.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cConstSchedule.cc.o --- [ 73%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cConstSchedule.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cConstSchedule.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cConstSchedule.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cDataFile.cc.o --- [ 74%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cDataFile.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cDataFile.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDataFile.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cDataFileManager.cc.o --- [ 75%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cDataFileManager.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cDataFileManager.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDataFileManager.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDataFileManager.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDataFileManager.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDataFileManager.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/cDataManager_Base.cc.o --- [ 75%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cDataManager_Base.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cDataManager_Base.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDataManager_Base.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cDemeProbSchedule.cc.o --- [ 76%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cDemeProbSchedule.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cDemeProbSchedule.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGermline.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/cFile.cc.o --- [ 76%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cFile.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cFile.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cFile.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cHelpAlias.cc.o --- [ 77%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cHelpAlias.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cHelpAlias.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cHelpAlias.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cHelpManager.cc.o --- [ 77%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cHelpManager.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cHelpManager.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cHelpManager.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cHelpManager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cHelpManager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cHelpManager.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/cHelpType.cc.o --- [ 78%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cHelpType.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cHelpType.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cHelpType.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cHistogram.cc.o --- [ 78%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cHistogram.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cHistogram.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cHistogram.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cInitFile.cc.o --- [ 79%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cInitFile.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cInitFile.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cInitFile.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Feedback.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cUserFeedback.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cInitFile.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cInitFile.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cInitFile.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cInitFile.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/cIntSum.cc.o --- [ 79%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cIntSum.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cIntSum.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntSum.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cIntegratedSchedule.cc.o --- [ 80%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cIntegratedSchedule.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cIntegratedSchedule.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGermline.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGermline.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/cIntegratedScheduleNode.cc.o --- [ 80%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cIntegratedScheduleNode.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cIntegratedScheduleNode.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cIntegratedScheduleNode.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cMerit.cc.o --- [ 81%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cMerit.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cMerit.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cMerit.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cOrderedWeightedIndex.cc.o --- [ 82%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cOrderedWeightedIndex.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cOrderedWeightedIndex.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cOrderedWeightedIndex.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cProbDemeProbSchedule.cc.o --- [ 82%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cProbDemeProbSchedule.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cProbDemeProbSchedule.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGermline.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbDemeProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/cProbSchedule.cc.o --- [ 83%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cProbSchedule.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cProbSchedule.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.h:27, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cGermline.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cDeme.h:29, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cProbSchedule.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/cRandom.cc.o --- [ 83%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cRandom.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cRandom.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.cc:11: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.cc:11: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.cc:11: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.cc:17:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.cc:61:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avidacore.dir/source/tools/cRunningAverage.cc.o --- [ 84%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cRunningAverage.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cRunningAverage.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRunningAverage.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cSchedule.cc.o --- [ 84%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cSchedule.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cSchedule.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cSchedule.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cString.cc.o --- [ 85%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cString.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cString.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cString.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cStringIterator.cc.o --- [ 85%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cStringIterator.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cStringIterator.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cStringIterator.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cStringList.cc.o --- [ 86%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cStringList.cc.o cd 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-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cStringList.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cStringList.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cStringUtil.cc.o --- [ 86%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cStringUtil.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cStringUtil.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cStringUtil.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/tools/cWeightedIndex.cc.o --- [ 87%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/tools/cWeightedIndex.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/tools/cWeightedIndex.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cWeightedIndex.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avidacore.dir/source/util/CmdLine.cc.o --- [ 87%] Building CXX object avida-core/CMakeFiles/avidacore.dir/source/util/CmdLine.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avidacore.dir/source/util/CmdLine.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/util/CmdLine.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/util/CmdLine.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/util/CmdLine.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/util/CmdLine.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/tObjectFactory.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/actions/cActionLibrary.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/util/CmdLine.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- lib/libavidacore.a --- [ 88%] Linking CXX static library ../lib/libavidacore.a cd /construction/biology/avida/.build/avida-core && /usr/local/bin/cmake -P CMakeFiles/avidacore.dir/cmake_clean_target.cmake cd /construction/biology/avida/.build/avida-core && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/avidacore.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libavidacore.a CMakeFiles/avidacore.dir/source/actions/cActionLibrary.cc.o CMakeFiles/avidacore.dir/source/actions/DriverActions.cc.o 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--- /usr/bin/make -f avida-core/CMakeFiles/avida.dir/build.make avida-core/CMakeFiles/avida.dir/depend --- avida-core/CMakeFiles/avida-viewer.dir/all --- /usr/bin/make -f avida-core/CMakeFiles/avida-viewer.dir/build.make avida-core/CMakeFiles/avida-viewer.dir/depend --- avida-core/CMakeFiles/avida.dir/all --- --- avida-core/CMakeFiles/avida.dir/depend --- cd /construction/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/avida/avida-2.12.4-src /construction/biology/avida/avida-2.12.4-src/avida-core /construction/biology/avida/.build /construction/biology/avida/.build/avida-core /construction/biology/avida/.build/avida-core/CMakeFiles/avida.dir/DependInfo.cmake --- avida-core/CMakeFiles/avida-viewer.dir/all --- --- avida-core/CMakeFiles/avida-viewer.dir/depend --- cd /construction/biology/avida/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/avida/avida-2.12.4-src /construction/biology/avida/avida-2.12.4-src/avida-core /construction/biology/avida/.build /construction/biology/avida/.build/avida-core /construction/biology/avida/.build/avida-core/CMakeFiles/avida-viewer.dir/DependInfo.cmake --- avida-core/CMakeFiles/avida.dir/all --- Scanning dependencies of target avida /usr/bin/make -f avida-core/CMakeFiles/avida.dir/build.make avida-core/CMakeFiles/avida.dir/build --- avida-core/CMakeFiles/avida.dir/source/targets/avida/primitive.cc.o --- [ 88%] Building CXX object avida-core/CMakeFiles/avida.dir/source/targets/avida/primitive.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida.dir/source/targets/avida/primitive.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cAvidaConfig.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:27: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/all --- Scanning dependencies of target avida-viewer /usr/bin/make -f avida-core/CMakeFiles/avida-viewer.dir/build.make avida-core/CMakeFiles/avida-viewer.dir/build --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o --- --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o --- --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- [ 89%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- [ 89%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o --- [ 89%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o --- [ 90%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o --- cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o --- cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o --- c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avida.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/all --- --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o --- c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/all --- --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida.dir/all --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida/primitive.cc:31: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/all --- --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:12: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeScreen.cc:29:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cBarScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cEnvironmentScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc: In member function 'void cAnalyzeView::DoInputs(cAvidaContext&)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:114:7: warning: this statement may fall through [-Wimplicit-fallthrough=] if (!Confirm("Are you sure you want to quit?")) break; ^~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.cc:115:5: note: here case 'Q': // Note: Capital 'Q' quits w/o confirming. ^~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cHistScreen.cc.o --- [ 91%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cHistScreen.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cHistScreen.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMapScreen.cc.o --- [ 91%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMapScreen.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMapScreen.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cHistScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMapScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cHistScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cHistScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMapScreen.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMapScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMenuWindow.cc.o --- [ 92%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMenuWindow.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMenuWindow.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMenuWindow.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMenuWindow.h:19, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMenuWindow.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMenuWindow.h:19, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cMenuWindow.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cOptionsScreen.cc.o --- [ 92%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cOptionsScreen.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cOptionsScreen.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cOptionsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cStatsScreen.cc.o --- [ 93%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cStatsScreen.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cStatsScreen.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cStatsScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cSymbolUtil.cc.o --- [ 94%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cSymbolUtil.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cSymbolUtil.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:12: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Genome.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:13: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cSymbolUtil.cc:15: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc.o --- [ 94%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.h:24, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:24: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cAnalyzeView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc:25: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerDriver.cc.o --- [ 95%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerDriver.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerDriver.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.h:24, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:22: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cInstruction.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Sequence.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:25: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:14, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cMutationRates.h:30, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:26: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cOrganism.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:26: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver.cc:31: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerDriver_Base.cc.o --- [ 95%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerDriver_Base.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerDriver_Base.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/WorldDriver.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.h:24, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:21: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:25, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyze.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextViewerDriver_Base.cc:23: /construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze/cAnalyzeJobQueue.h:44:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) && defined(AddJob) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextWindow.cc.o --- [ 96%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextWindow.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextWindow.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cView.cc.o --- [ 96%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cView.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cView.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cViewInfo.cc.o --- [ 97%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cViewInfo.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cViewInfo.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cView.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.h:12, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cViewInfo.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cView.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cViewInfo.cc.o --- In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cZoomScreen.cc.o --- [ 97%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cZoomScreen.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cZoomScreen.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/Version.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/Avida.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform.h:35, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:15, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cTextWindow.h:74:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:39, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cViewInfo.h:18, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cScreen.h:16, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.h:11, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cZoomScreen.cc:8: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/viewer.cc.o --- [ 98%] Building CXX object avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/viewer.cc.o cd /construction/biology/avida/.build/avida-core && /usr/bin/c++ -I/construction/biology/avida/avida-2.12.4-src/avida-core/source -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/actions -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/analyze -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/classification -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/cpu -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/drivers -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/main -I/construction/biology/avida/avida-2.12.4-src/avida-core/source/tools -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/public -I/construction/biology/avida/avida-2.12.4-src/avida-core/include/private -I/construction/biology/avida/avida-2.12.4-src/libs/apto/include -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/viewer.cc.o -c /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RefCount.h:34, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/String.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:34, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:49:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(APPLE) ^~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Atomic.h:70:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #elif APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:36, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:36:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/platform/Visibility.h:56:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] # if APTO_PLATFORM(GNUC) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:23: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/FileSystem.h:64:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cAvidaConfig.h:32, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:29: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Mutex.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:37, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:33: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ConditionVariable.h:37:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/List.h:35, from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:41, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:33: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ListStorage.h:302:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(LITTLE_ENDIAN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:45, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:33: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/RWLock.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:53, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:33: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:72:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/StringUtils.h:203:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:54, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:33: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/Thread.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core.h:55, from /construction/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/data/Types.h:28, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:26, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:33: /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~~~~ /construction/biology/avida/avida-2.12.4-src/libs/apto/include/apto/core/ThreadSpecific.h:38:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if APTO_PLATFORM(THREADS) && APTO_PLATFORM(UNIX) ^~~~~~~~~~~~~~~~~~ In file included from /construction/biology/avida/avida-2.12.4-src/avida-core/source/main/cWorld.h:31, from /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/viewer.cc:33: /construction/biology/avida/avida-2.12.4-src/avida-core/source/tools/cRandom.h:250:1: warning: this use of "defined" may not be portable [-Wexpansion-to-defined] #if !APTO_PLATFORM(WINDOWS) ^~~~~~~~~~~~~~~~~~~~~ --- avida-core/CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cView.cc.o --- /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc: In member function 'virtual bool cView::ProcessKeypress(cAvidaContext&, int)': /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:255:5: warning: this statement may fall through [-Wimplicit-fallthrough=] if (!Confirm("Are you sure you want to quit?")) break; ^~ /construction/biology/avida/avida-2.12.4-src/avida-core/source/targets/avida-viewer/cView.cc:256:3: note: here case 'Q': // Note: Capital 'Q' quits w/o confirming. ^~~~ --- avida-core/CMakeFiles/avida.dir/all --- --- bin/avida --- [ 99%] Linking CXX executable ../bin/avida cd /construction/biology/avida/.build/avida-core && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/avida.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -L/usr/local/lib -Wl,-rpath=/usr/local/lib CMakeFiles/avida.dir/source/targets/avida/primitive.cc.o -o ../bin/avida ../lib/libavidacore.a ../lib/libapto.a ../lib/libtcmalloc-1.4.a -pthread c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead [ 99%] Built target avida --- avida-core/CMakeFiles/avida-viewer.dir/all --- --- bin/avida-viewer --- [ 99%] Linking CXX executable ../bin/avida-viewer cd /construction/biology/avida/.build/avida-core && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/avida-viewer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -std=gnu++98 -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -L/usr/local/lib -Wl,-rpath=/usr/local/lib CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeScreen.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cAnalyzeView.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cBarScreen.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cEnvironmentScreen.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cHistScreen.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMapScreen.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cMenuWindow.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cOptionsScreen.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cStatsScreen.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cSymbolUtil.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerDriver.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextViewerDriver_Base.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cTextWindow.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cView.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cViewInfo.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/cZoomScreen.cc.o CMakeFiles/avida-viewer.dir/source/targets/avida-viewer/viewer.cc.o -o ../bin/avida-viewer -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib ../lib/libavidacore.a ../lib/libapto.a -lncurses -pthread ../lib/libtcmalloc-1.4.a -pthread c++: warning: '-mfused-madd' is deprecated; use '-ffp-contract=' instead [100%] Built target avida-viewer /usr/local/bin/cmake -E cmake_progress_start /construction/biology/avida/.build/CMakeFiles 0 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> avida-2.12.4 depends on file: /usr/local/lib/libncurses.so.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for avida-2.12.4 ===> Generating temporary packing list install -m 555 /construction/biology/avida/avida-2.12.4-src/avida.sh /construction/biology/avida/stage/usr/local/bin/avida install -s -m 555 /construction/biology/avida/.build/bin/avida /construction/biology/avida/stage/usr/local/lib/avida install -m 555 /construction/biology/avida/avida-2.12.4-src/avida-viewer.sh /construction/biology/avida/stage/usr/local/bin/avida-viewer install -s -m 555 /construction/biology/avida/.build/bin/avida-viewer /construction/biology/avida/stage/usr/local/lib/avida install -m 0644 /construction/biology/avida/avida-2.12.4-src/avida-core/support/config/*.cfg /construction/biology/avida/avida-2.12.4-src/avida-core/support/config/*.org /construction/biology/avida/stage/usr/local/lib/avida ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for avida-2.12.4 file sizes/checksums [130]: .. done packing files [130]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 7 JUL 2019 at 04:06:41 UTC Duration: 00:05:57