=> Building science/rdkit Started : Saturday, 21 JUL 2018 at 22:49:03 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for rdkit-2018.03.2: DOCS=on: Build and/or install documentation PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/rdkit XDG_CONFIG_HOME=/construction/science/rdkit HOME=/construction/science/rdkit TMPDIR="/tmp" PATH=/construction/science/rdkit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/rdkit XDG_CONFIG_HOME=/construction/science/rdkit HOME=/construction/science/rdkit TMPDIR="/tmp" PATH=/construction/science/rdkit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/rdkit/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- SHLIB_VER=2018.03.2 PORTDOCS="" PORTEXAMPLES="" DOCS="" NO_DOCS="@comment " PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- DOCS="" NO_DOCS="@comment " PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> rdkit-2018.03.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> rdkit-2018.03.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of rdkit-2018.03.2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user => rdkit-rdkit-Release_2018_03_2_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2018_03_2?dummy=/rdkit-rdkit-Release_2018_03_2_GH0.tar.gz fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2018_03_2?dummy=/rdkit-rdkit-Release_2018_03_2_GH0.tar.gz: size unknown fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2018_03_2?dummy=/rdkit-rdkit-Release_2018_03_2_GH0.tar.gz: size of remote file is not known rdkit-rdkit-Release_2018_03_2_GH0.tar.gz -1 B 0 Bps => schrodinger-maeparser-1.0.0_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/schrodinger/maeparser/tar.gz/1.0.0?dummy=/schrodinger-maeparser-1.0.0_GH0.tar.gz fetch: https://codeload.github.com/schrodinger/maeparser/tar.gz/1.0.0?dummy=/schrodinger-maeparser-1.0.0_GH0.tar.gz: size unknown fetch: https://codeload.github.com/schrodinger/maeparser/tar.gz/1.0.0?dummy=/schrodinger-maeparser-1.0.0_GH0.tar.gz: size of remote file is not known schrodinger-maeparser-1.0.0_GH0.tar.gz -1 B 0 Bps => fe443fcb429e69ef13219a7b5c6dd53544042cbf.patch doesn't seem to exist in /distfiles/. => Attempting to fetch https://github.com/rdkit/rdkit/commit/fe443fcb429e69ef13219a7b5c6dd53544042cbf.patch fetch: https://github.com/rdkit/rdkit/commit/fe443fcb429e69ef13219a7b5c6dd53544042cbf.patch: size unknown fetch: https://github.com/rdkit/rdkit/commit/fe443fcb429e69ef13219a7b5c6dd53544042cbf.patch: size of remote file is not known fe443fcb429e69ef13219a7b5c6dd53544042cbf.patch -1 B 0 Bps ===> Fetching all distfiles required by rdkit-2018.03.2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by rdkit-2018.03.2 for building => SHA256 Checksum OK for rdkit-rdkit-Release_2018_03_2_GH0.tar.gz. => SHA256 Checksum OK for schrodinger-maeparser-1.0.0_GH0.tar.gz. => SHA256 Checksum OK for schrodinger-coordgenlibs-ede3191_GH0.tar.gz. => SHA256 Checksum OK for fe443fcb429e69ef13219a7b5c6dd53544042cbf.patch. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by rdkit-2018.03.2 for building ===> Extracting for rdkit-2018.03.2 => SHA256 Checksum OK for rdkit-rdkit-Release_2018_03_2_GH0.tar.gz. => SHA256 Checksum OK for schrodinger-maeparser-1.0.0_GH0.tar.gz. => SHA256 Checksum OK for schrodinger-coordgenlibs-ede3191_GH0.tar.gz. => SHA256 Checksum OK for fe443fcb429e69ef13219a7b5c6dd53544042cbf.patch. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for rdkit-2018.03.2 ===> Applying distribution patches for rdkit-2018.03.2 ===> Applying ports patches for rdkit-2018.03.2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> rdkit-2018.03.2 depends on executable: flex - found ===> rdkit-2018.03.2 depends on package: rapidjson>=0 - not found ===> Installing existing package /packages/All/rapidjson-1.1.0_3.txz Installing rapidjson-1.1.0_3... Extracting rapidjson-1.1.0_3: .......... done ===> rdkit-2018.03.2 depends on package: rapidjson>=0 - found ===> Returning to build of rdkit-2018.03.2 ===> rdkit-2018.03.2 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.14.3,1.txz Installing py27-numpy-1.14.3,1... `-- Installing gcc5-5.5.0_4... | `-- Installing binutils-2.30_3,1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Extracting binutils-2.30_3,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0_1... | | `-- Installing mpfr-4.0.1... | | `-- Extracting mpfr-4.0.1: .......... done | `-- Extracting mpc-1.1.0_1: ......... done `-- Extracting gcc5-5.5.0_4: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing py27-setuptools-39.2.0... | `-- Installing python27-2.7.15... | | `-- Installing expat-2.2.5... | | `-- Extracting expat-2.2.5: .......... done | | `-- Installing libffi-3.2.1_2... | | `-- Extracting libffi-3.2.1_2: .......... done | | `-- Installing libressl-2.7.4... | | `-- Extracting libressl-2.7.4: .......... done | | `-- Installing ncurses-6.0.0s20171223_1... | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Installing readline-7.0.3_1... | | `-- Extracting readline-7.0.3_1: .......... done | `-- Extracting python27-2.7.15: .......... done `-- Extracting py27-setuptools-39.2.0: .......... done `-- Installing suitesparse-5.2.0... | `-- Installing lapack-3.5.0_4... | | `-- Installing blas-3.5.0_4... | | `-- Extracting blas-3.5.0_4: ....... done | `-- Extracting lapack-3.5.0_4: .......... done | `-- Installing metis-5.1.0_4... | `-- Extracting metis-5.1.0_4: .......... done `-- Extracting suitesparse-5.2.0: .......... done Extracting py27-numpy-1.14.3,1: .......... done Message from gcc5-5.5.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from metis-5.1.0_4: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> rdkit-2018.03.2 depends on package: py27-numpy>0 - found ===> Returning to build of rdkit-2018.03.2 ===> rdkit-2018.03.2 depends on executable: bison - not found ===> Installing existing package /packages/All/bison-3.0.4,1.txz Installing bison-3.0.4,1... `-- Installing m4-1.4.18,1... `-- Extracting m4-1.4.18,1: .......... done Extracting bison-3.0.4,1: .......... done ===> rdkit-2018.03.2 depends on executable: bison - found ===> Returning to build of rdkit-2018.03.2 ===> rdkit-2018.03.2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.11.4_1.txz Installing cmake-3.11.4_1... `-- Installing curl-7.60.0... | `-- Installing ca_root_nss-3.38... | `-- Extracting ca_root_nss-3.38: ........ done | `-- Installing krb5-1.16.1_5... | | `-- Installing pkgconf-1.4.2,1... | | `-- Extracting pkgconf-1.4.2,1: .......... done | `-- Extracting krb5-1.16.1_5: .......... done | `-- Installing libnghttp2-1.32.0... | `-- Extracting libnghttp2-1.32.0: .......... done `-- Extracting curl-7.60.0: .......... done `-- Installing jsoncpp-1.8.1_3... `-- Extracting jsoncpp-1.8.1_3: .......... done `-- Installing libarchive-3.3.2,1... | `-- Installing liblz4-1.8.2,1... | `-- Extracting liblz4-1.8.2,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.2,1: .......... done `-- Installing libuv-1.21.0... `-- Extracting libuv-1.21.0: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.11.4_1: .......... done Message from ca_root_nss-3.38: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> rdkit-2018.03.2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of rdkit-2018.03.2 ===> rdkit-2018.03.2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.3.4.txz Installing eigen-3.3.4... Extracting eigen-3.3.4: .......... done ===> rdkit-2018.03.2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of rdkit-2018.03.2 ===> rdkit-2018.03.2 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> rdkit-2018.03.2 depends on shared library: libboost_system.so - not found ===> Installing existing package /packages/All/boost-libs-1.67.0_2.txz Installing boost-libs-1.67.0_2... `-- Installing icu-62.1_1,1... `-- Extracting icu-62.1_1,1: .......... done Extracting boost-libs-1.67.0_2: .......... done Message from boost-libs-1.67.0_2: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> rdkit-2018.03.2 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so) ===> Returning to build of rdkit-2018.03.2 ===> rdkit-2018.03.2 depends on shared library: libboost_python27.so - not found ===> Installing existing package /packages/All/py27-boost-libs-1.67.0.txz Installing py27-boost-libs-1.67.0... Extracting py27-boost-libs-1.67.0: ... done Message from py27-boost-libs-1.67.0: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. You have built the Boost.Python library. You have to add the following options when building your own code: Compiler options: -I/usr/local/include/python2.7 -I/usr/local/include Linker options: -L/usr/local/lib/python2.7 -L/usr/local/lib -lboost_python -lpython2.7 ===> rdkit-2018.03.2 depends on shared library: libboost_python27.so - found (/usr/local/lib/libboost_python27.so) ===> Returning to build of rdkit-2018.03.2 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for rdkit-2018.03.2 ===> Performing out-of-source build /bin/mkdir -p /construction/science/rdkit/.build -- The C compiler identification is GNU 5.4.1 -- The CXX compiler identification is GNU 5.4.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.15") -- Found PythonLibs: /usr/local/lib/libpython2.7.so (found version "2.7.15") -- Boost version: 1.67.0 -- Found the following Boost libraries: -- python Python Install directory /usr/local/lib/python2.7/site-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -shared -lpthread -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Looking for pthread.h -- Looking for pthread.h - found -- Found Threads: TRUE -- Boost version: 1.67.0 -- Found the following Boost libraries: -- serialization == Using strict rotor definition -- Found MAEParser source in /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/maeparser -- Found coordgenlibs source in /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs == Updating Filters.cpp from pains file == Done updating pains files -- Found RapidJSON source in /construction/science/rdkit/rdkit-Release_2018_03_2/External -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG -- Build files have been written to: /construction/science/rdkit/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for rdkit-2018.03.2 /usr/local/bin/cmake -H/construction/science/rdkit/rdkit-Release_2018_03_2 -B/construction/science/rdkit/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/rdkit/.build/CMakeFiles /construction/science/rdkit/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- --- External/CoordGen/CMakeFiles/maeparser.dir/all --- --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- /usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend --- External/CoordGen/CMakeFiles/maeparser.dir/all --- /usr/bin/make -f External/CoordGen/CMakeFiles/maeparser.dir/build.make External/CoordGen/CMakeFiles/maeparser.dir/depend --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- /usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- /usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- --- External/CoordGen/CMakeFiles/coordgen_support.dir/depend --- --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- --- External/INCHI-API/CMakeFiles/inchi_support.dir/depend --- --- External/CoordGen/CMakeFiles/maeparser.dir/all --- --- External/CoordGen/CMakeFiles/maeparser.dir/depend --- --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen /construction/science/rdkit/.build /construction/science/rdkit/.build/External/CoordGen /construction/science/rdkit/.build/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/External/INCHI-API /construction/science/rdkit/.build /construction/science/rdkit/.build/External/INCHI-API /construction/science/rdkit/.build/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --- External/CoordGen/CMakeFiles/maeparser.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen /construction/science/rdkit/.build /construction/science/rdkit/.build/External/CoordGen /construction/science/rdkit/.build/External/CoordGen/CMakeFiles/maeparser.dir/DependInfo.cmake --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDGeneral /construction/science/rdkit/.build/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- Scanning dependencies of target coordgen_support /usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- Scanning dependencies of target inchi_support --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- Scanning dependencies of target hc --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- /usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- --- inchi_support --- --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- [ 0%] Built target coordgen_support --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- cd /construction/science/rdkit/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /construction/science/rdkit/rdkit-Release_2018_03_2/External/INCHI-API/python/noinchi.py /construction/science/rdkit/rdkit-Release_2018_03_2/rdkit/Chem/inchi.py --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/all --- /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o --- --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/all --- --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ChemicalFeatures /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ChemicalFeatures /construction/science/rdkit/.build/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/bin/cc -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/Cluster/Murtagh/hc.c --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- [ 0%] Built target inchi_support --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o --- [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/bin/cc -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/Cluster/Murtagh/hcdriver.c --- lib/libRDKithc.so.1.2018.03.2 --- [ 0%] Linking C shared library ../../../../lib/libRDKithc.so cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2018.03.2 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/all --- Scanning dependencies of target ChemicalFeatures --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2018.03.2 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/all --- /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- Scanning dependencies of target RDGeneral --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- [ 0%] Built target hc --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- /usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/all --- [ 0%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ChemicalFeatures/FreeChemicalFeature.cpp --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o --- [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral/Invariant.cpp --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o --- [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral/utils.cpp --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o --- [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral/types.cpp --- External/CoordGen/CMakeFiles/maeparser.dir/all --- Scanning dependencies of target maeparser /usr/bin/make -f External/CoordGen/CMakeFiles/maeparser.dir/build.make External/CoordGen/CMakeFiles/maeparser.dir/build --- External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o --- [ 1%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/maeparser/Buffer.cpp --- External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o --- [ 1%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/maeparser/MaeBlock.cpp --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o --- [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral/RDLog.cpp --- External/CoordGen/CMakeFiles/maeparser.dir/all --- --- External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o --- [ 2%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/maeparser/MaeParser.cpp --- External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o --- [ 2%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/maeparser/Reader.cpp --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o --- [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral/Dict.cpp --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/all --- --- lib/libRDKitChemicalFeatures.so.1.2018.03.2 --- [ 2%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so [ 2%] Built target ChemicalFeatures --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o --- [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral/LocaleSwitcher.cpp --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o --- [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral/versions.cpp --- lib/libRDKitRDGeneral.so.1.2018.03.2 --- [ 2%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2018.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -pthread cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so [ 3%] Built target RDGeneral --- Code/RDGeneral/CMakeFiles/testDict.dir/all --- --- Code/RDGeneral/CMakeFiles/testRDValue.dir/all --- --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/RDGeneral/CMakeFiles/testDict.dir/all --- /usr/bin/make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend --- Code/RDGeneral/CMakeFiles/testRDValue.dir/all --- /usr/bin/make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- /usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- /usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend --- Code/RDGeneral/CMakeFiles/testDict.dir/all --- --- Code/RDGeneral/CMakeFiles/testDict.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDGeneral /construction/science/rdkit/.build/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --- Code/RDGeneral/CMakeFiles/testRDValue.dir/all --- --- Code/RDGeneral/CMakeFiles/testRDValue.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDGeneral /construction/science/rdkit/.build/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataStructs /construction/science/rdkit/.build/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- --- Code/RDBoost/CMakeFiles/RDBoost.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDBoost /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDBoost /construction/science/rdkit/.build/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --- Code/RDGeneral/CMakeFiles/testDict.dir/all --- Scanning dependencies of target testDict /usr/bin/make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build --- Code/RDGeneral/CMakeFiles/testRDValue.dir/all --- Scanning dependencies of target testRDValue /usr/bin/make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build --- Code/RDGeneral/CMakeFiles/testDict.dir/all --- --- Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o --- --- Code/RDGeneral/CMakeFiles/testRDValue.dir/all --- --- Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o --- --- Code/RDGeneral/CMakeFiles/testDict.dir/all --- [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testDict.dir/testDict.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral/testDict.cpp --- Code/RDGeneral/CMakeFiles/testRDValue.dir/all --- [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDGeneral/testRDValue.cpp --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- Scanning dependencies of target RDBoost /usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build --- Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o --- [ 3%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /construction/science/rdkit/.build/Code/RDBoost && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDBoost_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDBoost/Wrap.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- Scanning dependencies of target DataStructs /usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build --- Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o --- [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/BitVect.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o --- [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/SparseBitVect.cpp --- Code/RDGeneral/CMakeFiles/testRDValue.dir/all --- --- Code/RDGeneral/testRDValue --- [ 3%] Linking CXX executable testRDValue cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 3%] Built target testRDValue --- Code/Numerics/CMakeFiles/testMatrices.dir/all --- /usr/bin/make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend --- Code/Numerics/CMakeFiles/testMatrices.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics /construction/science/rdkit/.build/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake Scanning dependencies of target testMatrices /usr/bin/make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build --- Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o --- [ 3%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /construction/science/rdkit/.build/Code/Numerics && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/testMatrices.cpp --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- --- lib/libRDKitRDBoost.so.1.2018.03.2 --- [ 3%] Linking CXX shared library ../../lib/libRDKitRDBoost.so cd /construction/science/rdkit/.build/Code/RDBoost && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2018.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so -pthread cd /construction/science/rdkit/.build/Code/RDBoost && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2018.03.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so [ 3%] Built target RDBoost --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- /usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/EigenSolvers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/EigenSolvers /construction/science/rdkit/.build/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake Scanning dependencies of target EigenSolvers /usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o --- [ 3%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp --- External/CoordGen/CMakeFiles/maeparser.dir/all --- --- lib/libRDKitmaeparser.so.1.2018.03.2 --- [ 3%] Linking CXX shared library ../../lib/libRDKitmaeparser.so cd /construction/science/rdkit/.build/External/CoordGen && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/maeparser.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitmaeparser.so.1 -o ../../lib/libRDKitmaeparser.so.1.2018.03.2 CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1 ../../lib/libRDKitmaeparser.so [ 3%] Built target maeparser --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- /usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend --- Code/Catalogs/CMakeFiles/Catalogs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Catalogs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Catalogs /construction/science/rdkit/.build/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake Scanning dependencies of target Catalogs /usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build --- Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o --- [ 3%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o cd /construction/science/rdkit/.build/Code/Catalogs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Catalogs/Catalog.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o --- [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/ExplicitBitVect.cpp --- Code/RDGeneral/CMakeFiles/testDict.dir/all --- --- Code/RDGeneral/testDict --- [ 3%] Linking CXX executable testDict cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testDict.dir/testDict.cpp.o -o testDict -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 3%] Built target testDict --- Code/Query/CMakeFiles/testQuery.dir/all --- /usr/bin/make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend --- Code/Query/CMakeFiles/testQuery.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Query /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Query /construction/science/rdkit/.build/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake Scanning dependencies of target testQuery /usr/bin/make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build --- Code/Query/CMakeFiles/testQuery.dir/test.cpp.o --- [ 3%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o cd /construction/science/rdkit/.build/Code/Query && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testQuery.dir/test.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Query/test.cpp --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- --- lib/libRDKitEigenSolvers.so.1.2018.03.2 --- [ 3%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so [ 4%] Built target EigenSolvers --- Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/all --- /usr/bin/make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend --- Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataManip/MetricMatrixCalc /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- --- Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o --- [ 4%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /construction/science/rdkit/.build/Code/Catalogs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Catalogs/CatalogParams.cpp --- Code/Numerics/CMakeFiles/testMatrices.dir/all --- --- Code/Numerics/testMatrices --- [ 4%] Linking CXX executable testMatrices cd /construction/science/rdkit/.build/Code/Numerics && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 --- Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/all --- Scanning dependencies of target testMatCalc /usr/bin/make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build --- Code/Numerics/CMakeFiles/testMatrices.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/all --- --- Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o --- [ 5%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp --- Code/Numerics/CMakeFiles/testMatrices.dir/all --- [ 5%] Built target testMatrices --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- /usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/SimDivPickers /construction/science/rdkit/.build/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- --- Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o --- [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/Catalogs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Catalogs/CatalogEntry.cpp --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- Scanning dependencies of target SimDivPickers /usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o --- [ 5%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers/DistPicker.cpp --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- --- lib/libRDKitCatalogs.so.1.2018.03.2 --- [ 6%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /construction/science/rdkit/.build/Code/Catalogs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/Catalogs && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so [ 6%] Built target Catalogs --- Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/all --- /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend --- Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ChemicalFeatures /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ChemicalFeatures /construction/science/rdkit/.build/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake Scanning dependencies of target testChemicalFeatures /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build --- Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o --- [ 6%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ChemicalFeatures/testChemicalFeatures.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o --- [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Utils.cpp --- Code/Query/CMakeFiles/testQuery.dir/all --- --- Code/Query/testQuery --- [ 7%] Linking CXX executable testQuery cd /construction/science/rdkit/.build/Code/Query && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testQuery.dir/test.cpp.o -o testQuery -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 7%] Built target testQuery --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- /usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDBoost/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDBoost/Wrap /construction/science/rdkit/.build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --- Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/all --- --- Code/DataManip/MetricMatrixCalc/testMatCalc --- [ 7%] Linking CXX executable testMatCalc cd /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 7%] Built target testMatCalc --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o --- [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/base64.cpp --- Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/all --- --- Code/ChemicalFeatures/testChemicalFeatures --- [ 8%] Linking CXX executable testChemicalFeatures cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- Scanning dependencies of target rdBase /usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build --- Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o --- [ 8%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /construction/science/rdkit/.build/Code/RDBoost/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/RDBoost/Wrap/RDBase.cpp --- Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/all --- [ 8%] Built target testChemicalFeatures --- External/CoordGen/CMakeFiles/coordgenlib.dir/all --- /usr/bin/make -f External/CoordGen/CMakeFiles/coordgenlib.dir/build.make External/CoordGen/CMakeFiles/coordgenlib.dir/depend --- External/CoordGen/CMakeFiles/coordgenlib.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen /construction/science/rdkit/.build /construction/science/rdkit/.build/External/CoordGen /construction/science/rdkit/.build/External/CoordGen/CMakeFiles/coordgenlib.dir/DependInfo.cmake --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- Scanning dependencies of target Clustering /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build --- External/CoordGen/CMakeFiles/coordgenlib.dir/all --- Scanning dependencies of target coordgenlib /usr/bin/make -f External/CoordGen/CMakeFiles/coordgenlib.dir/build.make External/CoordGen/CMakeFiles/coordgenlib.dir/build --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o --- --- External/CoordGen/CMakeFiles/coordgenlib.dir/all --- --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmentBuilder.cpp.o --- [ 8%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmentBuilder.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmentBuilder.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/CoordgenFragmentBuilder.cpp --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- [ 8%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DClustering_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/Cluster/Murtagh/Clustering.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o --- [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/BitOps.cpp --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o --- [ 9%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers/MaxMinPicker.cpp --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o --- [ 9%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers/HierarchicalClusterPicker.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o --- [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/DiscreteDistMat.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o --- [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/DiscreteValueVect.cpp --- External/CoordGen/CMakeFiles/coordgenlib.dir/all --- --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmenter.cpp.o --- [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmenter.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D 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External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMacrocycleBuilder.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMacrocycleBuilder.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/CoordgenMacrocycleBuilder.cpp --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- --- lib/libRDKitSimDivPickers.so.1.2018.03.2 --- [ 11%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKithc.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so [ 11%] Built target SimDivPickers --- Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/all --- /usr/bin/make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend --- Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/SimDivPickers /construction/science/rdkit/.build/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake Scanning dependencies of target testSimDivPickers /usr/bin/make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build --- Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o --- [ 11%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers/testPickers.cpp --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- --- rdkit/ML/Cluster/Clustering.so --- [ 12%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKithc.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 12%] Built target Clustering --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o --- [ 12%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/FPBReader.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o --- [ 12%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/MultiFPBReader.cpp --- External/CoordGen/CMakeFiles/coordgenlib.dir/all --- --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMinimizer.cpp.o --- [ 12%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMinimizer.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMinimizer.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/CoordgenMinimizer.cpp --- Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/all --- --- Code/SimDivPickers/testSimDivPickers --- [ 13%] Linking CXX executable testSimDivPickers cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../lib/libRDKithc.so.1.2018.03.2 [ 13%] Built target testSimDivPickers --- External/CoordGen/CMakeFiles/coordgenlib.dir/all --- --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizer.cpp.o --- [ 13%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizer.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizer.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/sketcherMinimizer.cpp --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerAtom.cpp.o --- [ 13%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerAtom.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerAtom.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/sketcherMinimizerAtom.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- lib/libRDKitDataStructs.so.1.2018.03.2 --- [ 13%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.03.2 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Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/testFPB.cpp --- External/CoordGen/CMakeFiles/coordgenlib.dir/all --- --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerBond.cpp.o --- [ 14%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerBond.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerBond.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/sketcherMinimizerBond.cpp --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerFragment.cpp.o --- [ 14%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerFragment.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerFragment.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/sketcherMinimizerFragment.cpp --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMarchingSquares.cpp.o --- [ 14%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMarchingSquares.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMarchingSquares.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/sketcherMinimizerMarchingSquares.cpp --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMolecule.cpp.o --- [ 15%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMolecule.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS 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External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerResidueInteraction.cpp.o --- [ 15%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerResidueInteraction.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerResidueInteraction.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/sketcherMinimizerResidueInteraction.cpp --- External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerRing.cpp.o --- [ 15%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerRing.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgenlib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerRing.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/coordgenlibs/sketcherMinimizerRing.cpp --- Code/DataStructs/CMakeFiles/testMultiFPB.dir/all --- /usr/bin/make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend --- Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataStructs /construction/science/rdkit/.build/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake Scanning dependencies of target testMultiFPB /usr/bin/make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build --- Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o --- [ 15%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/testMultiFPB.cpp --- Code/DataStructs/CMakeFiles/testFPB.dir/all --- --- Code/DataStructs/testFPB --- [ 15%] Linking CXX executable testFPB cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 15%] Built target testFPB --- Code/DataStructs/CMakeFiles/testDataStructs.dir/all --- /usr/bin/make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend --- Code/DataStructs/CMakeFiles/testDataStructs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataStructs /construction/science/rdkit/.build/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake Scanning dependencies of target testDataStructs /usr/bin/make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build --- Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o --- [ 15%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/testDatastructs.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- /usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataStructs/Wrap /construction/science/rdkit/.build/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- --- rdkit/rdBase.so --- [ 15%] Linking CXX shared module ../../../rdkit/rdBase.so cd /construction/science/rdkit/.build/Code/RDBoost/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 15%] Built target rdBase --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- /usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Geometry /construction/science/rdkit/.build/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- Scanning dependencies of target cDataStructs /usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- Scanning dependencies of target RDGeometryLib --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- /usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Wrap/DataStructs.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- [ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o cd /construction/science/rdkit/.build/Code/Geometry && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT 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cmake_link_script CMakeFiles/coordgenlib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitcoordgenlib.so.1 -o ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmentBuilder.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmenter.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMacrocycleBuilder.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMinimizer.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizer.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerAtom.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerBond.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerFragment.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerRing.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitmaeparser.so.1.2018.03.2 cd /construction/science/rdkit/.build/External/CoordGen && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitcoordgenlib.so.1 ../../lib/libRDKitcoordgenlib.so [ 15%] Built target coordgenlib --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- /usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataManip/MetricMatrixCalc/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake Scanning dependencies of target rdMetricMatrixCalc /usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o --- [ 15%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o --- [ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /construction/science/rdkit/.build/Code/Geometry && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/Transform2D.cpp --- Code/DataStructs/CMakeFiles/testMultiFPB.dir/all --- --- Code/DataStructs/testMultiFPB --- [ 15%] Linking CXX executable testMultiFPB cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -o testMultiFPB -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 15%] Built target testMultiFPB --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- /usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/SimDivPickers/Wrap /construction/science/rdkit/.build/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake Scanning dependencies of target rdSimDivPickers /usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o --- [ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o --- [ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Wrap/DiscreteValueVect.cpp --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- --- rdkit/DataManip/Metric/rdMetricMatrixCalc.so --- [ 16%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 16%] Built target rdMetricMatrixCalc --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- /usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/InfoTheory /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/InfoTheory /construction/science/rdkit/.build/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake Scanning dependencies of target InfoTheory /usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o --- [ 16%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DInfoTheory_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/InfoTheory/InfoBitRanker.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o --- [ 16%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /construction/science/rdkit/.build/Code/Geometry && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/Transform3D.cpp --- Code/DataStructs/CMakeFiles/testDataStructs.dir/all --- --- Code/DataStructs/testDataStructs --- [ 16%] Linking CXX executable testDataStructs cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 16%] Built target testDataStructs --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o --- [ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- --- lib/libRDKitInfoTheory.so.1.2018.03.2 --- [ 16%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so [ 17%] Built target InfoTheory --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/all --- /usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/InfoTheory/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake Scanning dependencies of target rdInfoTheory /usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o --- [ 17%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o cd /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o --- [ 17%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /construction/science/rdkit/.build/Code/Geometry && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/UniformGrid3D.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o --- [ 17%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o --- [ 17%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o --- [ 17%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /construction/science/rdkit/.build/Code/Geometry && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/GridUtils.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o --- [ 17%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Wrap/wrap_SparseBV.cpp --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/all --- --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o --- [ 17%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o cd /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- lib/libRDKitRDGeometryLib.so.1.2018.03.2 --- [ 17%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so [ 18%] Built target RDGeometryLib --- Code/ML/Data/CMakeFiles/cQuantize.dir/all --- /usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend --- Code/ML/Data/CMakeFiles/cQuantize.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/Data /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/Data /construction/science/rdkit/.build/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake Scanning dependencies of target cQuantize /usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build --- Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o --- [ 18%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o cd /construction/science/rdkit/.build/Code/ML/Data && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/Data/cQuantize.cpp --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- --- rdkit/SimDivFilters/rdSimDivPickers.so --- [ 18%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../../lib/libRDKithc.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 18%] Built target rdSimDivPickers --- Code/Geometry/CMakeFiles/testGrid.dir/all --- /usr/bin/make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend --- Code/Geometry/CMakeFiles/testGrid.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Geometry /construction/science/rdkit/.build/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake Scanning dependencies of target testGrid /usr/bin/make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build --- Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o --- [ 18%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /construction/science/rdkit/.build/Code/Geometry && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/testGrid.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o --- [ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp --- Code/Geometry/CMakeFiles/testGrid.dir/all --- --- Code/Geometry/testGrid --- [ 18%] Linking CXX executable testGrid cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 18%] Built target testGrid --- Code/Geometry/CMakeFiles/testTransforms.dir/all --- /usr/bin/make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend --- Code/Geometry/CMakeFiles/testTransforms.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Geometry /construction/science/rdkit/.build/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake Scanning dependencies of target testTransforms /usr/bin/make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build --- Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o --- [ 18%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /construction/science/rdkit/.build/Code/Geometry && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/testTransforms.cpp --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/all --- --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o --- [ 18%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp --- Code/ML/Data/CMakeFiles/cQuantize.dir/all --- --- rdkit/ML/Data/cQuantize.so --- [ 18%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /construction/science/rdkit/.build/Code/ML/Data && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 18%] Built target cQuantize --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/all --- /usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Geometry/Wrap /construction/science/rdkit/.build/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake Scanning dependencies of target rdGeometry /usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o --- [ 18%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /construction/science/rdkit/.build/Code/Geometry/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/Wrap/Point.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o --- [ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Wrap/wrap_BitOps.cpp --- Code/Geometry/CMakeFiles/testTransforms.dir/all --- --- Code/Geometry/testTransforms --- [ 18%] Linking CXX executable testTransforms cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 18%] Built target testTransforms --- Code/Numerics/Alignment/CMakeFiles/Alignment.dir/all --- /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend --- Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Alignment /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Alignment /construction/science/rdkit/.build/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake Scanning dependencies of target Alignment /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build --- Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o --- [ 18%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Alignment/AlignPoints.cpp --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/all --- --- rdkit/ML/InfoTheory/rdInfoTheory.so --- [ 18%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 18%] Built target rdInfoTheory --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/all --- /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Optimizer /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Optimizer /construction/science/rdkit/.build/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake Scanning dependencies of target Optimizer /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o --- [ 18%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Optimizer/BFGSOpt.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o --- [ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Wrap/wrap_FPB.cpp --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/all --- --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o --- [ 18%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Optimizer/LinearSearch.cpp --- Code/Numerics/Alignment/CMakeFiles/Alignment.dir/all --- --- lib/libRDKitAlignment.so.1.2018.03.2 --- [ 18%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so [ 18%] Built target Alignment --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend --- Code/GraphMol/CMakeFiles/GraphMol.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake Scanning dependencies of target GraphMol /usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build --- Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o --- [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Atom.cpp --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/all --- --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o --- [ 18%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /construction/science/rdkit/.build/Code/Geometry/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/Wrap/UniformGrid3D.cpp --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/all --- --- lib/libRDKitOptimizer.so.1.2018.03.2 --- [ 18%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so [ 18%] Built target Optimizer --- Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/all --- /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend --- Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Alignment /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Alignment /construction/science/rdkit/.build/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake Scanning dependencies of target testAlignment /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build --- Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o --- [ 18%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Alignment/testAlignment.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o --- [ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DataStructs/Wrap/wrap_Utils.cpp --- Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/all --- --- Code/Numerics/Alignment/testAlignment --- [ 18%] Linking CXX executable testAlignment cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o --- [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/QueryAtom.cpp --- Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/all --- [ 18%] Built target testAlignment --- Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/all --- /usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend --- Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Alignment/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake Scanning dependencies of target rdAlignment /usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build --- Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o --- [ 18%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- rdkit/DataStructs/cDataStructs.so --- [ 19%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o --- [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/QueryBond.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- [ 19%] Built target cDataStructs --- Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/all --- /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend --- Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Numerics/Optimizer /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Optimizer /construction/science/rdkit/.build/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake Scanning dependencies of target testOptimizer /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build --- Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o --- [ 20%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D 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-DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/Geometry/Wrap/rdGeometry.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o --- [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Bond.cpp --- Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/all --- --- rdkit/Numerics/rdAlignment.so --- [ 20%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 21%] Built target rdAlignment --- Code/ForceField/CMakeFiles/ForceField.dir/all --- /usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend --- Code/ForceField/CMakeFiles/ForceField.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ForceField /construction/science/rdkit/.build/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake Scanning dependencies of target ForceField /usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build --- Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o --- [ 21%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/ForceField.cpp --- Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/all --- --- Code/Numerics/Optimizer/testOptimizer --- [ 21%] Linking CXX executable testOptimizer cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 21%] Built target testOptimizer --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o --- [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolOps.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o --- [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FindRings.cpp --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/all --- --- rdkit/Geometry/rdGeometry.so --- [ 23%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /construction/science/rdkit/.build/Code/Geometry/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 23%] Built target rdGeometry --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ROMol.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/RWMol.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o --- [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/UFF/AngleBend.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o --- [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/UFF/BondStretch.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/PeriodicTable.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/atomic_data.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT 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/construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolPickler.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o --- [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Canon.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o --- [ 25%] Building CXX object 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Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o --- [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/AtomIterators.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o --- [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/BondIterators.cpp --- 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/construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/UFF/TorsionAngle.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o --- [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Aromaticity.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o --- [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Kekulize.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o --- [ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra 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/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/UFF/AngleConstraint.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o --- [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/AddHs.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o --- [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Matrices.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o --- [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Chirality.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o --- [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/RingInfo.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o --- [ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/UFF/TorsionConstraint.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o --- [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Conformer.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/AddHs.cpp: In function 'bool RDKit::MolOps::{anonymous}::adjustStereoAtomsIfRequired(RDKit::RWMol&, const RDKit::Atom*, const RDKit::Atom*)': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/AddHs.cpp:497:9: warning: unused variable 'dblBond' [-Wunused-variable] Bond *dblBond = nullptr; ^ --- Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Chirality.cpp:1737:62: warning: unused parameter 'mol' [-Wunused-parameter] bool isBondCandidateForStereo(const Bond *bond, const ROMol &mol) { ^ --- Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o --- [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Renumber.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o --- [ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/UFF/PositionConstraint.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o --- --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o --- Code/ForceField/CMakeFiles/ForceField.dir/all --- [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD 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-DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/AdjustQuery.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o --- [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS 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CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/MMFF/DistanceConstraint.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- lib/libRDKitGraphMol.so.1.2018.03.2 --- [ 29%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so [ 29%] Built target GraphMol --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SmilesParse /construction/science/rdkit/.build/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o --- [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/MMFF/AngleConstraint.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- Scanning dependencies of target SmilesParse /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o --- [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/SmilesParse.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o --- [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/MMFF/TorsionConstraint.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o --- [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/MMFF/PositionConstraint.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o --- [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/MMFF/Params.cpp --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/all --- /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Substruct /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Substruct /construction/science/rdkit/.build/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake Scanning dependencies of target SubstructMatch /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o --- [ 29%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Substruct/SubstructMatch.cpp --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o --- [ 29%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Substruct/SubstructUtils.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o --- [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o --- [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/SmilesWrite.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- lib/libRDKitForceField.so.1.2018.03.2 --- [ 29%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so [ 29%] Built target ForceField --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Subgraphs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Subgraphs /construction/science/rdkit/.build/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake Scanning dependencies of target Subgraphs /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o --- [ 29%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Subgraphs/Subgraphs.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o --- [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/SmartsWrite.cpp --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/all --- --- lib/libRDKitSubstructMatch.so.1.2018.03.2 --- [ 30%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so [ 30%] Built target SubstructMatch --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/PartialCharges /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/PartialCharges /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake Scanning dependencies of target PartialCharges /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o --- [ 30%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o --- [ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o --- [ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o --- [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/smarts.tab.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o --- [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/smiles.tab.cpp --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o --- [ 32%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/PartialCharges/GasteigerParams.cpp --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- --- lib/libRDKitSubgraphs.so.1.2018.03.2 --- [ 33%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so [ 33%] Built target Subgraphs --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolTransforms /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolTransforms /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o --- smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter] smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter] smarts.yy:26:9: warning: unused parameter 'scanner' [-Wunused-parameter] --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- Scanning dependencies of target MolTransforms /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o --- [ 33%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolTransforms/MolTransforms.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o --- smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter] smiles.yy:40:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] smiles.yy:41:9: warning: unused parameter 'scanner' [-Wunused-parameter] --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o --- [ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o --- [ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolCatalog /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake Scanning dependencies of target MolCatalog /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o --- [ 33%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- --- lib/libRDKitPartialCharges.so.1.2018.03.2 --- [ 33%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so [ 33%] Built target PartialCharges --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Trajectory /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Trajectory /construction/science/rdkit/.build/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake Scanning dependencies of target Trajectory /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o --- [ 33%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Trajectory/Trajectory.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- /scratch/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'int yy_get_next_buffer(yyscan_t)': /scratch/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2237:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o --- /scratch/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: In function 'int yy_get_next_buffer(yyscan_t)': /scratch/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:1952:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- --- lib/libRDKitMolTransforms.so.1.2018.03.2 --- [ 33%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so [ 34%] Built target MolTransforms --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolInterchange /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolInterchange /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake Scanning dependencies of target MolInterchange /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o --- [ 34%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolInterchange_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/rapidjson-1.1.0/include -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolInterchange/Parser.cpp --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o --- [ 34%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolInterchange_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/rapidjson-1.1.0/include -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolInterchange/Writer.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- lib/libRDKitSmilesParse.so.1.2018.03.2 --- [ 34%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so [ 34%] Built target SmilesParse --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- /usr/bin/make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SLNParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SLNParse /construction/science/rdkit/.build/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake Scanning dependencies of target SLNParse /usr/bin/make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o --- [ 34%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SLNParse/SLNParse.cpp --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o --- [ 34%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- --- lib/libRDKitTrajectory.so.1.2018.03.2 --- [ 34%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so [ 34%] Built target Trajectory --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake Scanning dependencies of target rdqueries /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o --- [ 34%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/rdqueries.cpp --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- --- lib/libRDKitMolCatalog.so.1.2018.03.2 --- [ 34%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so [ 34%] Built target MolCatalog --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- /usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ChemicalFeatures/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolInterchange/Parser.cpp:218:52: warning: unused parameter 'params' [-Wunused-parameter] const JSONParseParameters ¶ms) { ^ --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- Scanning dependencies of target rdChemicalFeatures /usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o --- [ 34%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o --- [ 34%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- --- lib/libRDKitMolInterchange.so.1.2018.03.2 --- [ 34%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o ../../../lib/libRDKitMolInterchange.so.1.2018.03.2 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2018.03.2 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so [ 34%] Built target MolInterchange --- Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/all --- /usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend --- Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/PartialCharges/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake Scanning dependencies of target rdPartialCharges /usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build --- Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o --- [ 34%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o --- [ 34%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SLNParse/SLNAttribs.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o --- [ 34%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/Queries.cpp --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o --- [ 34%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SLNParse/sln.tab.cpp --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- --- rdkit/Chem/rdChemicalFeatures.so --- [ 34%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 34%] Built target rdChemicalFeatures --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/all --- /usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolTransforms/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --- Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/all --- --- rdkit/Chem/rdPartialCharges.so --- [ 35%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 35%] Built target rdPartialCharges --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/all --- /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolAlign /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolAlign /construction/science/rdkit/.build/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake Scanning dependencies of target MolAlign /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/all --- Scanning dependencies of target rdMolTransforms /usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/all --- --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o --- --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/all --- --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o --- --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/all --- [ 35%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolAlign/AlignMolecules.cpp --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/all --- [ 35%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- sln.yy:60:43: warning: unused parameter 'ms' [-Wunused-parameter] sln.yy:60:51: warning: unused parameter 'doQ' [-Wunused-parameter] sln.yy:61:13: warning: unused parameter 'scanner' [-Wunused-parameter] --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o --- [ 35%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SLNParse/lex.yysln.cpp /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2585:58: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2917:47: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2922:62: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2934:40: warning: unused parameter 'yyscanner' [-Wunused-parameter] --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/all --- --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o --- [ 35%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ShapeHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake Scanning dependencies of target ShapeHelpers /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o --- [ 36%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- --- lib/libRDKitSLNParse.so.1.2018.03.2 --- [ 36%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so [ 36%] Built target SLNParse --- Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend --- Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake Scanning dependencies of target graphmoltestCanon /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build --- Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o --- [ 36%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/testCanon.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- --- rdkit/Chem/rdqueries.so --- [ 37%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 37%] Built target rdqueries --- Code/GraphMol/CMakeFiles/graphmolIterTest.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend --- Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake Scanning dependencies of target graphmolIterTest /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build --- Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o --- [ 37%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/itertest.cpp --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/all --- --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o --- [ 37%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/all --- --- rdkit/Chem/rdMolTransforms.so --- [ 37%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 37%] Built target rdMolTransforms --- Code/GraphMol/CMakeFiles/graphmolcpTest.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend --- Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake Scanning dependencies of target graphmolcpTest /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build --- Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o --- [ 38%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/cptest.cpp --- Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/all --- --- Code/GraphMol/graphmoltestCanon --- [ 38%] Linking CXX executable graphmoltestCanon cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 38%] Built target graphmoltestCanon --- Code/GraphMol/CMakeFiles/test-valgrind.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend --- Code/GraphMol/CMakeFiles/test-valgrind.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake Scanning dependencies of target test-valgrind /usr/bin/make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build --- Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o --- [ 39%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/test-valgrind.cpp --- Code/GraphMol/CMakeFiles/graphmolIterTest.dir/all --- --- Code/GraphMol/graphmolIterTest --- [ 40%] Linking CXX executable graphmolIterTest cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 40%] Built target graphmolIterTest --- Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend --- Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake Scanning dependencies of target graphmolqueryTest /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build --- Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o --- [ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/querytest.cpp --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/all --- --- lib/libRDKitShapeHelpers.so.1.2018.03.2 --- [ 40%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so [ 40%] Built target ShapeHelpers --- Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend --- Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake Scanning dependencies of target graphmolMemTest1 /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build --- Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o --- [ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/memtest1.cpp --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/all --- --- lib/libRDKitMolAlign.so.1.2018.03.2 --- [ 40%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so [ 41%] Built target MolAlign --- Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/all --- /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend --- Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SmilesParse /construction/science/rdkit/.build/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake Scanning dependencies of target smaTest1 /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build --- Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o --- [ 41%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/smatest.cpp --- Code/GraphMol/CMakeFiles/graphmolcpTest.dir/all --- --- Code/GraphMol/graphmolcpTest --- [ 41%] Linking CXX executable graphmolcpTest cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 41%] Built target graphmolcpTest --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/all --- /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemTransforms /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake Scanning dependencies of target ChemTransforms /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o --- [ 41%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp --- Code/GraphMol/CMakeFiles/test-valgrind.dir/all --- --- Code/GraphMol/test-valgrind --- [ 41%] Linking CXX executable test-valgrind cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -o test-valgrind -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 41%] Built target test-valgrind --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/all --- /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Subgraphs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Subgraphs /construction/science/rdkit/.build/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake Scanning dependencies of target testSubgraphs1 /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o --- [ 41%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Subgraphs/test1.cpp --- Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/all --- --- Code/GraphMol/graphmolMemTest1 --- [ 41%] Linking CXX executable graphmolMemTest1 cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 41%] Built target graphmolMemTest1 --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/all --- /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Subgraphs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Subgraphs /construction/science/rdkit/.build/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake Scanning dependencies of target testSubgraphs2 /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o --- [ 41%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Subgraphs/test2.cpp --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/all --- --- Code/GraphMol/Subgraphs/testSubgraphs1 --- [ 41%] Linking CXX executable testSubgraphs1 cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 41%] Built target testSubgraphs1 --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake Scanning dependencies of target FilterCatalog /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o --- [ 41%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog/Filters.cpp --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/all --- --- Code/GraphMol/Subgraphs/testSubgraphs2 --- [ 41%] Linking CXX executable testSubgraphs2 cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/all --- --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o --- --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/all --- [ 42%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp --- Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/all --- [ 42%] Built target testSubgraphs2 --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FragCatalog /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --- Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/all --- --- Code/GraphMol/graphmolqueryTest --- [ 42%] Linking CXX executable graphmolqueryTest cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 42%] Built target graphmolqueryTest --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Fingerprints /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Fingerprints /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- Scanning dependencies of target FragCatalog /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o --- [ 42%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- Scanning dependencies of target Fingerprints /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o --- [ 42%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Fingerprints/Fingerprints.cpp --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp: In function 'void RDKit::MolFragmenter::{anonymous}::checkChiralityPostMove(const RDKit::ROMol&, const RDKit::Atom*, RDKit::Atom*, const RDKit::Bond*)': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:367:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bidx != bond->getIdx()) { ^ --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o --- [ 42%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/all --- --- Code/GraphMol/SmilesParse/smaTest1 --- [ 42%] Linking CXX executable smaTest1 cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 42%] Built target smaTest1 --- Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/all --- /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend --- Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/PartialCharges /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/PartialCharges /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake Scanning dependencies of target testPartialCharges /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build --- Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o --- [ 42%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/PartialCharges/test1.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o --- [ 42%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/all --- --- lib/libRDKitChemTransforms.so.1.2018.03.2 --- [ 42%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o --- [ 42%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Fingerprints/PatternFingerprints.cpp --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so [ 42%] Built target ChemTransforms --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o --- [ 42%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Fingerprints/MorganFingerprints.cpp --- Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/all --- --- Code/GraphMol/PartialCharges/testPartialCharges --- [ 42%] Linking CXX executable testPartialCharges cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 42%] Built target testPartialCharges --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake Scanning dependencies of target ForceFieldHelpers /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o --- [ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o --- [ 43%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Fingerprints/AtomPairs.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o --- [ 43%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o --- [ 43%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o --- [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Fingerprints/MACCS.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o --- [ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o --- [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/FragCatParams.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o --- [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- lib/libRDKitFingerprints.so.1.2018.03.2 --- [ 44%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so [ 44%] Built target Fingerprints --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/all --- /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake Scanning dependencies of target MolChemicalFeatures /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o --- [ 44%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp --- Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/all --- /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend --- Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ReducedGraphs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake Scanning dependencies of target ReducedGraphs /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build --- Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o --- [ 44%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o --- [ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- --- lib/libRDKitFragCatalog.so.1.2018.03.2 --- [ 45%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so [ 45%] Built target FragCatalog --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake Scanning dependencies of target rdtrajectory /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o --- [ 45%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/Trajectory.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o --- [ 45%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o --- [ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o --- [ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o --- [ 47%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp --- Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/all --- --- lib/libRDKitReducedGraphs.so.1.2018.03.2 --- [ 47%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so [ 48%] Built target ReducedGraphs --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o --- [ 48%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o --- [ 48%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o --- [ 48%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o --- [ 48%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/rdTrajectory.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o --- [ 48%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- --- lib/libRDKitFilterCatalog.so.1.2018.03.2 --- [ 48%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so [ 48%] Built target FilterCatalog --- Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/all --- /usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend --- Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolInterchange/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake Scanning dependencies of target rdMolInterchange /usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build --- Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o --- [ 49%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolInterchange_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/rapidjson-1.1.0/include -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/all --- --- rdkit/Chem/rdtrajectory.so --- [ 49%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 49%] Built target rdtrajectory --- Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/all --- /usr/bin/make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend --- Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SLNParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SLNParse /construction/science/rdkit/.build/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --- Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/all --- /usr/bin/make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend --- Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SLNParse/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --- Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/all --- Scanning dependencies of target testSLNParse /usr/bin/make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build --- Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o --- [ 50%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SLNParse/test.cpp --- Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/all --- Scanning dependencies of target rdSLNParse /usr/bin/make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build --- Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o --- [ 50%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/all --- --- lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 --- [ 50%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so [ 50%] Built target MolChemicalFeatures --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ShapeHelpers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake Scanning dependencies of target rdShapeHelpers /usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o --- [ 50%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- --- lib/libRDKitForceFieldHelpers.so.1.2018.03.2 --- [ 51%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so [ 51%] Built target ForceFieldHelpers --- External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/all --- /usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/depend --- External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/External/CoordGen/Wrap /construction/science/rdkit/.build/External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/DependInfo.cmake Scanning dependencies of target rdCoordGen /usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build --- External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o --- [ 51%] Building CXX object External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o cd /construction/science/rdkit/.build/External/CoordGen/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdCoordGen_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/Wrap/rdCoordGen.cpp --- Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/all --- --- rdkit/Chem/rdMolInterchange.so --- [ 51%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolInterchange.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 51%] Built target rdMolInterchange --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/all --- /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Depictor /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Depictor /construction/science/rdkit/.build/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake Scanning dependencies of target Depictor /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o --- [ 52%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Depictor/RDDepictor.cpp --- Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/all --- --- rdkit/Chem/rdSLNParse.so --- [ 52%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 52%] Built target rdSLNParse --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake Scanning dependencies of target rdchem /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o --- [ 52%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/rdchem.cpp --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Depictor/RDDepictor.cpp:421:10: warning: unused parameter 'forceRDKit' [-Wunused-parameter] bool forceRDKit) { ^ --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o --- [ 52%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Depictor/EmbeddedFrag.cpp --- Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/all --- --- Code/GraphMol/SLNParse/testSLNParse --- [ 52%] Linking CXX executable testSLNParse cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 52%] Built target testSLNParse --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SubstructLibrary /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake Scanning dependencies of target SubstructLibrary /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o --- [ 52%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp --- External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/all --- --- rdkit/Chem/rdCoordGen.so --- [ 53%] Linking CXX shared module ../../../rdkit/Chem/rdCoordGen.so cd /construction/science/rdkit/.build/External/CoordGen/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdCoordGen.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/Chem/rdCoordGen.so CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 53%] Built target rdCoordGen --- Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/all --- /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/all --- --- rdkit/Chem/rdShapeHelpers.so --- --- Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/all --- --- Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ReducedGraphs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/all --- [ 53%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 54%] Built target rdShapeHelpers --- Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/all --- /usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend --- Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ReducedGraphs/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --- Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/all --- Scanning dependencies of target testReducedGraphs /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build --- Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o --- [ 54%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ReducedGraphs/test1.cpp --- Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/all --- Scanning dependencies of target rdReducedGraphs /usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build --- Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o --- [ 54%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/all --- --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o --- [ 54%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Depictor/DepictUtils.cpp --- Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/all --- --- Code/GraphMol/ReducedGraphs/testReducedGraphs --- [ 54%] Linking CXX executable testReducedGraphs cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 54%] Built target testReducedGraphs --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake Scanning dependencies of target rdMolChemicalFeatures /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o --- [ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- --- lib/libRDKitSubstructLibrary.so.1.2018.03.2 --- [ 54%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so [ 54%] Built target SubstructLibrary --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- /usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ForceField/Wrap /construction/science/rdkit/.build/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o --- [ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/Table.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/Table.cpp --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- Scanning dependencies of target rdForceField /usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o --- [ 55%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /construction/science/rdkit/.build/Code/ForceField/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/Wrap/ForceField.cpp --- Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/all --- --- rdkit/Chem/rdReducedGraphs.so --- [ 55%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 56%] Built target rdReducedGraphs --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- /usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend --- Code/DistGeom/CMakeFiles/DistGeometry.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DistGeom /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DistGeom /construction/science/rdkit/.build/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake Scanning dependencies of target DistGeometry /usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build --- Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o --- [ 56%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /construction/science/rdkit/.build/Code/DistGeom && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DistGeom/DistGeomUtils.cpp --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/all --- --- lib/libRDKitDepictor.so.1.2018.03.2 --- [ 56%] Linking CXX shared library ../../../lib/libRDKitDepictor.so cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so [ 56%] Built target Depictor --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- --- Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o --- [ 57%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /construction/science/rdkit/.build/Code/DistGeom && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DistGeom/TriangleSmooth.cpp --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o --- [ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- --- Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o --- [ 57%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o cd /construction/science/rdkit/.build/Code/DistGeom && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DistGeom/DistViolationContrib.cpp --- Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o --- [ 57%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /construction/science/rdkit/.build/Code/DistGeom && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DistGeom/ChiralViolationContrib.cpp --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake Scanning dependencies of target rdForceFieldHelpers /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o --- [ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o --- [ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/Atom.cpp --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- --- lib/libRDKitDistGeometry.so.1.2018.03.2 --- [ 58%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so [ 58%] Built target DistGeometry --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FileParsers /construction/science/rdkit/.build/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake Scanning dependencies of target FileParsers /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o --- [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/Mol2FileParser.cpp --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o --- [ 59%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- --- rdkit/ForceField/rdForceField.so --- [ 59%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /construction/science/rdkit/.build/Code/ForceField/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 59%] Built target rdForceField --- Code/DistGeom/CMakeFiles/testDistGeom.dir/all --- /usr/bin/make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend --- Code/DistGeom/CMakeFiles/testDistGeom.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DistGeom /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DistGeom /construction/science/rdkit/.build/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake Scanning dependencies of target testDistGeom /usr/bin/make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build --- Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o --- [ 59%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o cd /construction/science/rdkit/.build/Code/DistGeom && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DistGeom/testDistGeom.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o --- [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/MolFileParser.cpp --- Code/DistGeom/CMakeFiles/testDistGeom.dir/all --- --- Code/DistGeom/testDistGeom --- [ 60%] Linking CXX executable testDistGeom cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 60%] Built target testDistGeom --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- /usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DistGeom/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DistGeom/Wrap /construction/science/rdkit/.build/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake Scanning dependencies of target DistGeom /usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o --- [ 60%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o cd /construction/science/rdkit/.build/Code/DistGeom/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/DistGeom/Wrap/DistGeom.cpp --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o --- --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- --- rdkit/Chem/rdForceFieldHelpers.so --- [ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- [ 60%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- [ 60%] Built target rdForceFieldHelpers --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/DistGeomHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake Scanning dependencies of target DistGeomHelpers /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o --- [ 60%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o --- [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/Bond.cpp --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- --- rdkit/Chem/rdMolChemicalFeatures.so --- [ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 60%] Built target rdMolChemicalFeatures --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o --- [ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/MolFileStereochem.cpp --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- --- rdkit/DistanceGeometry/DistGeom.so --- [ 60%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /construction/science/rdkit/.build/Code/DistGeom/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 61%] Built target DistGeom --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o --- [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/MolFileWriter.cpp --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o --- [ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/DistGeomHelpers/Embedder.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o --- [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o --- [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/SDMolSupplier.cpp --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- --- lib/libRDKitDistGeomHelpers.so.1.2018.03.2 --- [ 62%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so [ 62%] Built target DistGeomHelpers --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o --- [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/SDWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o --- [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o --- [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/SmilesWriter.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o --- [ 62%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/Mol.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o --- [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o --- [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/TDTWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/TplFileParser.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/TplFileWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/PDBParser.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/PDBWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/PDBSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/ProximityBonds.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/SequenceParsers.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o --- In file included from /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/PDBParser.cpp:24:0: /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable] static unsigned int ctdALL_FLAGS = 0xFFFFFFFF; ^ --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o --- [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/SequenceWriters.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o --- In file included from /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/ProximityBonds.cpp:10:0: /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable] static unsigned int ctdALL_FLAGS = 0xFFFFFFFF; ^ --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o --- [ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/Conformer.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o --- [ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/RingInfo.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o --- [ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/EditableMol.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o --- [ 65%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/MonomerInfo.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- lib/libRDKitFileParsers.so.1.2018.03.2 --- [ 65%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.03.2 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so [ 65%] Built target FileParsers --- External/CoordGen/CMakeFiles/testCoordGen.dir/all --- /usr/bin/make -f External/CoordGen/CMakeFiles/testCoordGen.dir/build.make External/CoordGen/CMakeFiles/testCoordGen.dir/depend --- External/CoordGen/CMakeFiles/testCoordGen.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen /construction/science/rdkit/.build /construction/science/rdkit/.build/External/CoordGen /construction/science/rdkit/.build/External/CoordGen/CMakeFiles/testCoordGen.dir/DependInfo.cmake Scanning dependencies of target testCoordGen /usr/bin/make -f External/CoordGen/CMakeFiles/testCoordGen.dir/build.make External/CoordGen/CMakeFiles/testCoordGen.dir/build --- External/CoordGen/CMakeFiles/testCoordGen.dir/test.cpp.o --- [ 65%] Building CXX object External/CoordGen/CMakeFiles/testCoordGen.dir/test.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testCoordGen.dir/test.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/External/CoordGen/test.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o --- [ 65%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o --- [ 65%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/MolBundle.cpp --- Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/all --- /usr/bin/make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend --- Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/UFF /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ForceField/UFF /construction/science/rdkit/.build/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake Scanning dependencies of target testUFFForceField /usr/bin/make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build --- Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o --- [ 65%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o cd /construction/science/rdkit/.build/Code/ForceField/UFF && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/UFF/testUFFForceField.cpp --- Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/all --- /usr/bin/make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend --- Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/MMFF /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ForceField/MMFF /construction/science/rdkit/.build/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake Scanning dependencies of target testMMFFForceField /usr/bin/make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build --- Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o --- [ 65%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o cd /construction/science/rdkit/.build/Code/ForceField/MMFF && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ForceField/MMFF/testMMFFForceField.cpp --- External/CoordGen/CMakeFiles/testCoordGen.dir/all --- --- External/CoordGen/testCoordGen --- [ 65%] Linking CXX executable testCoordGen cd /construction/science/rdkit/.build/External/CoordGen && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testCoordGen.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testCoordGen.dir/test.cpp.o -o testCoordGen -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitAlignment.so.1.2018.03.2 ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 65%] Built target testCoordGen --- Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend --- Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake Scanning dependencies of target graphmoltestChirality /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build --- Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o --- [ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/testChirality.cpp --- Code/GraphMol/CMakeFiles/molBundleTest.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend --- Code/GraphMol/CMakeFiles/molBundleTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake Scanning dependencies of target molBundleTest /usr/bin/make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build --- Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o --- [ 65%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/testMolBundle.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- rdkit/Chem/rdchem.so --- [ 65%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 65%] Built target rdchem --- Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend --- Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake Scanning dependencies of target graphmoltestPickler /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build --- Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o --- [ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/testPickler.cpp --- Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/all --- --- Code/ForceField/UFF/testUFFForceField --- [ 66%] Linking CXX executable testUFFForceField cd /construction/science/rdkit/.build/Code/ForceField/UFF && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 66%] Built target testUFFForceField --- Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend --- Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake Scanning dependencies of target graphmolMolOpsTest /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build --- Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o --- [ 66%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/molopstest.cpp --- Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/all --- --- Code/ForceField/MMFF/testMMFFForceField --- [ 67%] Linking CXX executable testMMFFForceField cd /construction/science/rdkit/.build/Code/ForceField/MMFF && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 67%] Built target testMMFFForceField --- Code/GraphMol/CMakeFiles/graphmolTest1.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend --- Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake Scanning dependencies of target graphmolTest1 /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build --- Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o --- [ 67%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/test1.cpp --- Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/molopstest.cpp: In function 'void testRenumberAtoms()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/molopstest.cpp:4693:12: warning: unused variable 'nm' [-Wunused-variable] ROMol *nm = MolOps::renumberAtoms(*m, nVect); ^ --- Code/GraphMol/CMakeFiles/molBundleTest.dir/all --- --- Code/GraphMol/molBundleTest --- [ 67%] Linking CXX executable molBundleTest cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitAlignment.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 67%] Built target molBundleTest --- Code/GraphMol/CMakeFiles/hanoiTest.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend --- Code/GraphMol/CMakeFiles/hanoiTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake Scanning dependencies of target hanoiTest /usr/bin/make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build --- Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/molopstest.cpp: In function 'void testGithub1281()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/molopstest.cpp:6940:16: warning: unused variable 'm' [-Wunused-variable] RWMol *m = SmilesToMol(smiles); ^ --- Code/GraphMol/CMakeFiles/hanoiTest.dir/all --- --- Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o --- [ 67%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/hanoitest.cpp --- Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/all --- --- Code/GraphMol/graphmoltestChirality --- [ 68%] Linking CXX executable graphmoltestChirality cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitAlignment.so.1.2018.03.2 ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 68%] Built target graphmoltestChirality --- Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend --- Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake Scanning dependencies of target resMolSupplierTest /usr/bin/make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build --- Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o --- [ 68%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/resMolSupplierTest.cpp --- Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/all --- --- Code/GraphMol/graphmoltestPickler --- --- Code/GraphMol/CMakeFiles/hanoiTest.dir/all --- --- Code/GraphMol/hanoiTest --- --- Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/all --- [ 68%] Linking CXX executable graphmoltestPickler cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 --- Code/GraphMol/CMakeFiles/hanoiTest.dir/all --- [ 69%] Linking CXX executable hanoiTest cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 --- Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitAlignment.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1.2018.03.2 --- Code/GraphMol/CMakeFiles/hanoiTest.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitAlignment.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1.2018.03.2 --- Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/all --- [ 69%] Built target graphmoltestPickler --- Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend --- Code/GraphMol/CMakeFiles/hanoiTest.dir/all --- [ 69%] Built target hanoiTest --- Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/all --- /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend --- Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/all --- --- Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --- Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/all --- --- Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Depictor /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Depictor /construction/science/rdkit/.build/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake Scanning dependencies of target testDepictor /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build --- Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o --- [ 70%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Depictor/testDepictor.cpp --- Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/all --- Scanning dependencies of target graphmoltestPicklerGlobalSetting /usr/bin/make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build --- Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o --- [ 70%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/testPicklerGlobalSettings.cpp --- Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/all --- --- Code/GraphMol/resMolSupplierTest --- [ 71%] Linking CXX executable resMolSupplierTest cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitAlignment.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 71%] Built target resMolSupplierTest --- Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/all --- /usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend --- Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Depictor/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake Scanning dependencies of target rdDepictor /usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build --- Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o --- [ 71%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp --- Code/GraphMol/CMakeFiles/graphmolTest1.dir/all --- --- Code/GraphMol/graphmolTest1 --- [ 71%] Linking CXX executable graphmolTest1 cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitAlignment.so.1.2018.03.2 ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 71%] Built target graphmolTest1 --- Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/all --- /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend --- Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SmilesParse /construction/science/rdkit/.build/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake Scanning dependencies of target cxsmilesTest /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build --- Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o --- [ 72%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/cxsmiles_test.cpp --- Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:31: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ --- Code/GraphMol/graphmoltestPicklerGlobalSetting --- [ 72%] Linking CXX executable graphmoltestPicklerGlobalSetting cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitAlignment.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 72%] Built target graphmoltestPicklerGlobalSetting --- Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/all --- /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend --- Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SmilesParse /construction/science/rdkit/.build/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake Scanning dependencies of target smiTest1 /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build --- Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o --- [ 72%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/smiTest1.dir/test.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SmilesParse/test.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/all --- --- Code/GraphMol/SmilesParse/cxsmilesTest --- [ 72%] Linking CXX executable cxsmilesTest cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 72%] Built target cxsmilesTest --- Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/all --- /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend --- Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FileParsers /construction/science/rdkit/.build/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake Scanning dependencies of target testMolWriter /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build --- Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o --- [ 72%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/testMolWriter.cpp --- Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/all --- --- Code/GraphMol/Depictor/testDepictor --- [ 72%] Linking CXX executable testDepictor cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 72%] Built target testDepictor --- Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/all --- /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend --- Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FileParsers /construction/science/rdkit/.build/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake Scanning dependencies of target fileParsersTest1 /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build --- Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o --- [ 72%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/test1.cpp --- Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/all --- --- rdkit/Chem/rdDepictor.so --- [ 72%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 72%] Built target rdDepictor --- Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/all --- /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend --- Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FileParsers /construction/science/rdkit/.build/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake Scanning dependencies of target testTplParser /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build --- Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o --- [ 72%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/testTpls.cpp --- Code/GraphMol/FileParsers/testTplParser --- [ 72%] Linking CXX executable testTplParser cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 72%] Built target testTplParser --- Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/all --- /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend --- Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FileParsers /construction/science/rdkit/.build/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake Scanning dependencies of target testMolSupplier /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build --- Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o --- [ 72%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/testMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/all --- --- Code/GraphMol/FileParsers/testMolWriter --- [ 72%] Linking CXX executable testMolWriter cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 72%] Built target testMolWriter --- Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/all --- /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend --- Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FileParsers /construction/science/rdkit/.build/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake Scanning dependencies of target testSequence /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build --- Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o --- [ 72%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/testSequence.cpp --- Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/all --- --- Code/GraphMol/graphmolMolOpsTest --- [ 72%] Linking CXX executable graphmolMolOpsTest cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitAlignment.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 72%] Built target graphmolMolOpsTest --- Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/all --- /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend --- Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FileParsers /construction/science/rdkit/.build/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake Scanning dependencies of target testMol2ToMol /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build --- Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o --- [ 72%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FileParsers/testMol2ToMol.cpp --- Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/all --- --- Code/GraphMol/FileParsers/testSequence --- [ 72%] Linking CXX executable testSequence cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 72%] Built target testSequence --- Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/all --- /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend --- Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Substruct /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Substruct /construction/science/rdkit/.build/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake Scanning dependencies of target testSubstructMatch /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build --- Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o --- [ 73%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Substruct/test1.cpp --- Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/all --- --- Code/GraphMol/FileParsers/testMol2ToMol --- [ 73%] Linking CXX executable testMol2ToMol cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 73%] Built target testMol2ToMol --- Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/all --- /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend --- Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemTransforms /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake Scanning dependencies of target testChemTransforms /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build --- Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o --- [ 73%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemTransforms/testChemTransforms.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/all --- --- Code/GraphMol/SmilesParse/smiTest1 --- [ 73%] Linking CXX executable smiTest1 cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 73%] Built target smiTest1 --- Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/all --- /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend --- Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --- Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/all --- --- Code/GraphMol/FileParsers/testMolSupplier --- [ 74%] Linking CXX executable testMolSupplier cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 74%] Built target testMolSupplier --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --- Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/all --- Scanning dependencies of target filterCatalogTest /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build --- Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o --- [ 74%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/all --- Scanning dependencies of target rdfiltercatalog /usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o --- [ 74%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o --- [ 75%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp --- Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/all --- --- Code/GraphMol/Substruct/testSubstructMatch --- [ 75%] Linking CXX executable testSubstructMatch cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 75%] Built target testSubstructMatch --- Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend --- Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FragCatalog /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake Scanning dependencies of target testFragCatalog /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build --- Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o --- [ 76%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/test1.cpp --- Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/all --- --- Code/GraphMol/FileParsers/fileParsersTest1 --- [ 76%] Linking CXX executable fileParsersTest1 cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 76%] Built target fileParsersTest1 --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --- Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/all --- --- Code/GraphMol/FilterCatalog/filterCatalogTest --- [ 76%] Linking CXX executable filterCatalogTest cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 76%] Built target filterCatalogTest --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- Scanning dependencies of target rdfragcatalog /usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o --- [ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- Scanning dependencies of target Descriptors /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o --- [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/Crippen.cpp --- Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/all --- --- Code/GraphMol/ChemTransforms/testChemTransforms --- [ 76%] Linking CXX executable testChemTransforms cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 76%] Built target testChemTransforms --- Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/all --- /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend --- Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Fingerprints /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Fingerprints /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake Scanning dependencies of target testFingerprints /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build --- Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o --- [ 76%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Fingerprints/test1.cpp --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o --- [ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/all --- --- Code/GraphMol/FragCatalog/testFragCatalog --- [ 76%] Linking CXX executable testFragCatalog cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 76%] Built target testFragCatalog --- Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/all --- /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend --- Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolTransforms /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolTransforms /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake Scanning dependencies of target testMolTransforms /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build --- Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o --- [ 76%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolTransforms/test1.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o --- [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/MolDescriptors.cpp --- Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/all --- --- Code/GraphMol/MolTransforms/testMolTransforms --- [ 77%] Linking CXX executable testMolTransforms cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 77%] Built target testMolTransforms --- Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend --- Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/MMFF /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/MMFF /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake Scanning dependencies of target testMMFFForceFieldHelpers /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build --- Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o --- [ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o --- [ 77%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o --- [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/MolSurf.cpp --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/all --- --- rdkit/Chem/rdfiltercatalog.so --- [ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 77%] Built target rdfiltercatalog --- Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend --- Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/UFF /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/UFF /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake Scanning dependencies of target testUFFForceFieldHelpers /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build --- Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o --- [ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o --- [ 77%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o --- [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/Lipinski.cpp --- Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpers --- [ 77%] Linking CXX executable testMMFFForceFieldHelpers cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 77%] Built target testMMFFForceFieldHelpers --- Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/all --- /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend --- Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/CrystalFF /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake Scanning dependencies of target testCrystalForceField /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build --- Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o --- [ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/all --- --- Code/GraphMol/Fingerprints/testFingerprints --- [ 77%] Linking CXX executable testFingerprints cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 77%] Built target testFingerprints --- Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend --- Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/DistGeomHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake Scanning dependencies of target testDistGeomHelpers /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build --- Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o --- [ 77%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o --- [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp --- Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/all --- --- Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalForceField --- [ 77%] Linking CXX executable testCrystalForceField cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 77%] Built target testCrystalForceField --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- /usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/DistGeomHelpers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o --- [ 78%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- Scanning dependencies of target rdDistGeom /usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o --- [ 78%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DBOOST_PYTHON_MAX_ARITY=32 -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o --- [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/MQN.cpp --- Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/UFF/testUFFForceFieldHelpers --- [ 78%] Linking CXX executable testUFFForceFieldHelpers cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/UFF && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 78%] Built target testUFFForceFieldHelpers --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/all --- /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake Scanning dependencies of target testFeatures /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o --- [ 78%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp --- Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/all --- --- Code/GraphMol/DistGeomHelpers/testDistGeomHelpers --- [ 78%] Linking CXX executable testDistGeomHelpers cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 78%] Built target testDistGeomHelpers --- Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend --- Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ShapeHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake Scanning dependencies of target testShapeHelpers /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build --- Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o --- [ 78%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o --- [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/Property.cpp --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- rdkit/Chem/rdfragcatalog.so --- [ 78%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 78%] Built target rdfragcatalog --- Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend --- Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolCatalog /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake Scanning dependencies of target testMolCatalog /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build --- Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o --- [ 78%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolCatalog/test1.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/testFeatures --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o --- --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/all --- [ 78%] Linking CXX executable testFeatures cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1 --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 78%] Built target testFeatures --- Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend --- Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolCatalog/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --- Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/all --- --- Code/GraphMol/ShapeHelpers/testShapeHelpers --- [ 78%] Linking CXX executable testShapeHelpers cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 78%] Built target testShapeHelpers --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FMCS /construction/science/rdkit/.build/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --- Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/all --- Scanning dependencies of target rdMolCatalog /usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build --- Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o --- [ 78%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- Scanning dependencies of target FMCS /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- --- rdkit/Chem/rdDistGeom.so --- [ 78%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o --- [ 78%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS/FMCS.cpp --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- [ 79%] Built target rdDistGeom --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MMPA /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MMPA /construction/science/rdkit/.build/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake Scanning dependencies of target MMPA /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o --- [ 79%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MMPA/MMPA.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o --- [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o --- [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- --- lib/libRDKitMMPA.so.1.2018.03.2 --- [ 80%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so [ 80%] Built target MMPA --- Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/all --- /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend --- Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Trajectory /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Trajectory /construction/science/rdkit/.build/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake Scanning dependencies of target trajectoryTest /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build --- Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o --- [ 80%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Trajectory/trajectoryTest.cpp --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o --- [ 80%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS/Seed.cpp --- Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/all --- --- Code/GraphMol/MolCatalog/testMolCatalog --- [ 80%] Linking CXX executable testMolCatalog cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 80%] Built target testMolCatalog --- Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/all --- /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend --- Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SubstructLibrary /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake Scanning dependencies of target substructLibraryTest /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build --- Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o --- [ 80%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o --- [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/USRDescriptor.cpp --- Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:31: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ --- Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/all --- --- rdkit/Chem/rdMolCatalog.so --- [ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 80%] Built target rdMolCatalog --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/all --- /usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SubstructLibrary/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake Scanning dependencies of target rdSubstructLibrary /usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o --- [ 80%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o --- [ 80%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp --- Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/all --- --- Code/GraphMol/Trajectory/trajectoryTest --- [ 81%] Linking CXX executable trajectoryTest cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 81%] Built target trajectoryTest --- Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/all --- /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend --- Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolInterchange /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolInterchange /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake --- Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/all --- --- Code/GraphMol/SubstructLibrary/substructLibraryTest --- [ 81%] Linking CXX executable substructLibraryTest cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 81%] Built target substructLibraryTest --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --- Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/all --- Scanning dependencies of target molInterchangeTest1 /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build --- Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o --- [ 81%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/rapidjson-1.1.0/include -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolInterchange/test1.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o --- [ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/PBF.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/PBF.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- Scanning dependencies of target rdmolfiles /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o --- [ 81%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/rdmolfiles.cpp --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/all --- --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o --- [ 81%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o --- [ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/PMI.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/PMI.cpp --- Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/all --- --- Code/GraphMol/MolInterchange/molInterchangeTest1 --- [ 82%] Linking CXX executable molInterchangeTest1 cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/molInterchangeTest1.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -o molInterchangeTest1 -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitMolInterchange.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 82%] Built target molInterchangeTest1 --- Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/all --- /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend --- Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MMPA /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MMPA /construction/science/rdkit/.build/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake Scanning dependencies of target testMMPA /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build --- Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o --- [ 82%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MMPA/MMPA_UnitTest.cpp --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o --- [ 82%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o --- [ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp --- Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/all --- --- Code/GraphMol/MMPA/testMMPA --- [ 82%] Linking CXX executable testMMPA cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 82%] Built target testMMPA --- Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/all --- /usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend --- Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MMPA/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- lib/libRDKitFMCS.so.1.2018.03.2 --- [ 82%] Linking CXX shared library ../../../lib/libRDKitFMCS.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2018.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so [ 82%] Built target FMCS --- Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/all --- /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend --- Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FMCS /construction/science/rdkit/.build/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --- Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/all --- Scanning dependencies of target rdMMPA /usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build --- Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o --- [ 83%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp --- Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/all --- Scanning dependencies of target testFMCS /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build --- Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o --- [ 83%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS/testFMCS_Unit.cpp --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/all --- --- rdkit/Chem/rdSubstructLibrary.so --- [ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 83%] Built target rdSubstructLibrary --- Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/all --- /usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend --- Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o --- [ 83%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp --- Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/all --- Scanning dependencies of target rdFMCS /usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build --- Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o --- [ 83%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o --- [ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/RDF.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/RDF.cpp --- Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/all --- --- Code/GraphMol/FMCS/testFMCS --- [ 83%] Linking CXX executable testFMCS cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 83%] Built target testFMCS --- Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/all --- /usr/bin/make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend --- Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS/Test /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FMCS/Test /construction/science/rdkit/.build/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake Scanning dependencies of target FMCStest /usr/bin/make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build --- Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o --- [ 84%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS/Test && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/FMCS/Test/testFMCS.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o --- [ 84%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/SDMolSupplier.cpp --- Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/all --- --- rdkit/Chem/rdFMCS.so --- [ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 84%] Built target rdFMCS --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/RGroupDecomposition /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake Scanning dependencies of target RGroupDecomposition /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o --- [ 84%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o --- [ 85%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/MORSE.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/MORSE.cpp --- Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/all --- --- rdkit/Chem/rdMMPA.so --- [ 85%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 85%] Built target rdMMPA --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o --- [ 85%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/GETAWAY.cpp --- Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/all --- --- Code/GraphMol/FMCS/Test/FMCStest --- [ 85%] Linking CXX executable FMCStest cd /construction/science/rdkit/.build/Code/GraphMol/FMCS/Test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 85%] Built target FMCStest --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o --- [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/TDTMolSupplier.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o --- [ 85%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/Descriptors.dir/WHIM.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/WHIM.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o --- [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/SmilesMolSupplier.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o --- [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/SmilesWriter.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- --- lib/libRDKitRGroupDecomposition.so.1.2018.03.2 --- [ 86%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so [ 86%] Built target RGroupDecomposition --- Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/all --- /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend --- Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/RGroupDecomposition /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake Scanning dependencies of target testRGroupDecomp /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build --- Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o --- [ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o --- [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/SDWriter.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/all --- --- Code/GraphMol/RGroupDecomposition/testRGroupDecomp --- [ 86%] Linking CXX executable testRGroupDecomp cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 86%] Built target testRGroupDecomp --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/all --- /usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/RGroupDecomposition/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake Scanning dependencies of target rdRGroupDecomposition /usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o --- [ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o --- [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/TDTWriter.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o --- [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/PDBWriter.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- lib/libRDKitDescriptors.so.1.2018.03.2 --- [ 86%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.03.2 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors.dir/PBF.cpp.o CMakeFiles/Descriptors.dir/PMI.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors.dir/RDF.cpp.o CMakeFiles/Descriptors.dir/MORSE.cpp.o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o CMakeFiles/Descriptors.dir/WHIM.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so [ 86%] Built target Descriptors --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemReactions /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake Scanning dependencies of target ChemReactions /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o --- [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Reaction.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake Scanning dependencies of target testAUTOCORR2D /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make 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-fno-strict-aliasing -pthread -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake Scanning dependencies of target testDescriptors /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build --- Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o --- --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/all --- --- rdkit/Chem/rdRGroupDecomposition.so --- [ 86%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so --- Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/all --- [ 86%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 --- Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/test.cpp --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 86%] Built target rdRGroupDecomposition --- Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/DependInfo.cmake Scanning dependencies of target testPBF /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build --- Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/testPBF.cpp.o --- [ 86%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/testPBF.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testPBF.dir/testPBF.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testPBF.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o --- [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/MDLParser.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:31: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- rdkit/Chem/rdmolfiles.so --- [ 86%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o 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../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 86%] Built target rdmolfiles --- Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/DependInfo.cmake Scanning dependencies of target test3D /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build --- Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/test3D.cpp.o --- [ 86%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/test3D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/test3D.dir/test3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/test3D.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testPBF.cpp:115:10: warning: unused parameter 'argc' [-Wunused-parameter] main(int argc, char *argv[]) ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testPBF.cpp:115:27: warning: unused parameter 'argv' [-Wunused-parameter] main(int argc, char *argv[]) ^ --- Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/all --- --- Code/GraphMol/Descriptors/testAUTOCORR2D --- [ 86%] Linking CXX executable testAUTOCORR2D cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -o testAUTOCORR2D -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 86%] Built target testAUTOCORR2D --- Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/DependInfo.cmake Scanning dependencies of target testGETAWAY /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build --- Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o --- [ 86%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testGETAWAY.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/all --- --- Code/GraphMol/Descriptors/testPBF --- [ 86%] Linking CXX executable testPBF cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testPBF.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testPBF.dir/testPBF.cpp.o -o testPBF -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 86%] Built target testPBF --- Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake Scanning dependencies of target testAUTOCORR3D /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build --- Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o --- [ 86%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testGETAWAY.cpp:106:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testGETAWAY.cpp:106:31: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ --- Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp:85:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp:85:31: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ --- Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/all --- --- Code/GraphMol/Descriptors/testGETAWAY --- [ 86%] Linking CXX executable testGETAWAY cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testGETAWAY.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -o testGETAWAY -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o --- [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/DaylightParser.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/all --- [ 86%] Built target testGETAWAY --- Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/DependInfo.cmake --- Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/all --- --- Code/GraphMol/Descriptors/testAUTOCORR3D --- [ 87%] Linking CXX executable testAUTOCORR3D cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR3D.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -o testAUTOCORR3D -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 87%] Built target testAUTOCORR3D --- Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/DependInfo.cmake --- Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/all --- --- Code/GraphMol/Descriptors/test3D --- [ 87%] Linking CXX executable test3D cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test3D.dir/link.txt --verbose=1 --- Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/all --- Scanning dependencies of target testMORSE --- Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/test3D.dir/test3D.cpp.o -o test3D -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build --- Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/testMORSE.cpp.o --- --- Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/all --- [ 87%] Built target test3D --- Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/all --- [ 87%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/testMORSE.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMORSE.dir/testMORSE.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testMORSE.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake --- Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/all --- Scanning dependencies of target testRDF /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build --- Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/testRDF.cpp.o --- [ 87%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/testRDF.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testRDF.dir/testRDF.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testRDF.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/all --- Scanning dependencies of target testWHIM /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build --- Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o --- [ 87%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testWHIM.dir/testWHIM.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testWHIM.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/all --- --- Code/GraphMol/Descriptors/testDescriptors --- [ 87%] Linking CXX executable testDescriptors cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread --- Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testRDF.cpp: In function 'void testRDF()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testRDF.cpp:63:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < drdf.size(); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testRDF.cpp: At global scope: /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testRDF.cpp:96:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testRDF.cpp:96:31: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ --- Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/all --- [ 87%] Built target testDescriptors --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake Scanning dependencies of target rdMolDescriptors /usr/bin/make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o --- [ 87%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testMORSE.cpp: In function 'void testMORSE()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testMORSE.cpp:67:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < dmorse.size(); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testMORSE.cpp: At global scope: /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testMORSE.cpp:100:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testMORSE.cpp:100:31: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ --- Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testWHIM.cpp:184:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Descriptors/testWHIM.cpp:184:31: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, char *argv[]) { ^ --- Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/all --- --- Code/GraphMol/Descriptors/testRDF --- [ 87%] Linking CXX executable testRDF cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testRDF.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testRDF.dir/testRDF.cpp.o -o testRDF -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 87%] Built target testRDF --- Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/all --- /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend --- Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolAlign /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolAlign /construction/science/rdkit/.build/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake Scanning dependencies of target testMolAlign /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build --- Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o --- [ 87%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolAlign/testMolAlign.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/all --- --- Code/GraphMol/Descriptors/testMORSE --- [ 87%] Linking CXX executable testMORSE cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMORSE.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMORSE.dir/testMORSE.cpp.o -o testMORSE -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 87%] Built target testMORSE --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/all --- /usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolAlign/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake Scanning dependencies of target rdMolAlign /usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o --- [ 87%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o --- [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/ReactionPickler.cpp --- Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/all --- --- Code/GraphMol/Descriptors/testWHIM --- [ 87%] Linking CXX executable testWHIM cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testWHIM.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testWHIM.dir/testWHIM.cpp.o -o testWHIM -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 87%] Built target testWHIM --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolHash /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolHash /construction/science/rdkit/.build/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake Scanning dependencies of target MolHash /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o --- [ 87%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolHash/MolHash.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o --- [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/ReactionWriter.cpp --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o --- [ 87%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolHash/HashToString.cpp --- Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/all --- --- Code/GraphMol/MolAlign/testMolAlign --- [ 88%] Linking CXX executable testMolAlign cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 88%] Built target testMolAlign --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- /usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/StructChecker /construction/science/rdkit/.build/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake Scanning dependencies of target StructChecker /usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o --- [ 89%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StructChecker.cpp --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- --- lib/libRDKitMolHash.so.1.2018.03.2 --- [ 89%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.03.2 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so [ 90%] Built target MolHash --- Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/all --- /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend --- Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolHash /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolHash /construction/science/rdkit/.build/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake Scanning dependencies of target testMolHash /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build --- Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o --- [ 90%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolHash/testMolHash.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o --- [ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/ReactionDepict.cpp --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/all --- --- rdkit/Chem/rdMolAlign.so --- [ 92%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 92%] Built target rdMolAlign --- Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/all --- /usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend --- Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolHash/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake Scanning dependencies of target rdMolHash /usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build --- Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o --- --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o --- --- Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/all --- [ 92%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- [ 92%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::parseOptionsJSON(const string&, RDKit::StructureCheck::StructCheckerOptions&)': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:33:19: warning: unused variable 'iss' [-Wunused-variable] std::istream &iss = ss; ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector >&)': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:356:12: warning: unused variable 'k' [-Wunused-variable] unsigned k = fscanf(fp, "%d", &n); ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: At global scope: /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:665:46: warning: unused parameter 'path' [-Wunused-parameter] bool loadChargeDataTables(const std::string &path) { ^ --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o --- [ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp --- Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/all --- --- Code/GraphMol/MolHash/testMolHash --- [ 92%] Linking CXX executable testMolHash cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testMolHash.dir/testMolHash.cpp.o -o testMolHash -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 92%] Built target testMolHash --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o --- [ 92%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StructureFlags.cpp --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o --- [ 92%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Utilites.cpp --- Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/all --- --- rdkit/Chem/rdMolHash.so --- [ 92%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so cd /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 92%] Built target rdMolHash --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o --- [ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/ReactionUtils.cpp --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/all --- --- rdkit/Chem/rdMolDescriptors.so --- [ 92%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 93%] Built target rdMolDescriptors --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o --- [ 93%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Pattern.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o --- [ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/MoleculeParser.cpp --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o --- [ 93%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Stereo.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o --- [ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/ReactionRunner.cpp --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o --- [ 93%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o --- [ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/PreprocessRxn.cpp --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::Atom3Parity(RDKit::StructureCheck::stereo_bond_t*)': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Stereo.cpp:371:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if (ligands[i].direction != RDKit::Bond::NONE) ^ --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o --- [ 94%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/StripSmallFragments.cpp --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o --- [ 94%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/ReCharge.cpp --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o --- [ 94%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Tautomer.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o --- [ 94%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/SanitizeRxn.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o --- [ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o --- [ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Tautomer.cpp: In member function 'bool RDKit::StructureCheck::StructCheckTautomer::applyTautomer(unsigned int)': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Tautomer.cpp:61:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (-1 == ti || -1 == tj) continue; ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Tautomer.cpp:61:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (-1 == ti || -1 == tj) continue; ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Tautomer.cpp:36:18: warning: unused variable 'ntb' [-Wunused-variable] const unsigned ntb = toTautomer.getNumBonds(); ^ --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o --- [ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'bool RDKit::StructureCheck::ChargeFix::setpKaValues()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/ReCharge.cpp:166:24: warning: variable 'AAp' set but not used [-Wunused-but-set-variable] const AugmentedAtom *AAp; ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'int RDKit::StructureCheck::ChargeFix::markMostAcidicAtoms(double&, double&)': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/ReCharge.cpp:405:17: warning: unused variable 'atom' [-Wunused-variable] const Atom &atom = *Mol.getAtomWithIdx(i); ^ --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- In file included from /usr/local/include/boost/assert.hpp:58:0, from /usr/local/include/boost/format/parsing.hpp:21, from /usr/local/include/boost/format.hpp:50, from /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp:33: /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp: In member function 'bool RDKit::EvenSamplePairsStrategy::try_add(size_t)': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp:147:31: warning: comparison of unsigned expression >= 0 is always true [-Wtype-limits] assert(var_used[i][j] >= 0); ^ --- Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/all --- --- lib/libRDKitStructChecker.so.1.2018.03.2 --- [ 95%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.03.2 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so [ 95%] Built target StructChecker --- Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/all --- /usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend --- Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/StructChecker /construction/science/rdkit/.build/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake Scanning dependencies of target testStructChecker /usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build --- Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o --- [ 95%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp --- Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/all --- /usr/bin/make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend --- Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/StructChecker/Wrap /construction/science/rdkit/.build/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake Scanning dependencies of target rdStructChecker /usr/bin/make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build --- Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o --- [ 95%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/Wrap/structchecker.cpp --- Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testLoadOptionsFromFiles()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:139:8: warning: unused variable 'ok' [-Wunused-variable] bool ok; ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testStereo()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:324:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testOptionsDefault()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:400:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtomWithDefaultGoodAtoms()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:424:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtom()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:448:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificExamples()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:603:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificOrder()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:676:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformTau()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:705:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformAtoms()': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:749:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp: At global scope: /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:14: warning: unused parameter 'argc' [-Wunused-parameter] int main(int argc, const char* argv[]) { ^ /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:37: warning: unused parameter 'argv' [-Wunused-parameter] int main(int argc, const char* argv[]) { ^ --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- lib/libRDKitChemReactions.so.1.2018.03.2 --- [ 95%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.03.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so [ 95%] Built target ChemReactions --- Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/all --- /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend --- Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all --- /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend --- Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/all --- /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend --- Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend --- --- Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend --- --- Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend --- --- Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemReactions /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --- Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemReactions /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --- Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemReactions /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --- Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/all --- Scanning dependencies of target testEnumeration /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build --- Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o --- [ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all --- Scanning dependencies of target testReaction /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build --- Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/all --- Scanning dependencies of target testReactionFingerprints /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build --- Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o --- [ 96%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/testReaction.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o --- [ 96%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp --- Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/all --- --- Code/GraphMol/StructChecker/testStructChecker --- [ 96%] Linking CXX executable testStructChecker cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -o testStructChecker -Wl,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 96%] Built target testStructChecker --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- /usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake Scanning dependencies of target rdChemReactions /usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o --- [ 96%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp --- Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/all --- --- rdkit/Chem/rdStructChecker.so --- [ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 97%] Built target rdStructChecker --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake Scanning dependencies of target MolDraw2D /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o --- [ 97%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/all --- /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: In function 'int main(int, char**)': /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp:378:8: warning: variable 'doLong' set but not used [-Wunused-but-set-variable] bool doLong = false; ^ --- Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/all --- --- Code/GraphMol/ChemReactions/testReactionFingerprints --- [ 97%] Linking CXX executable testReactionFingerprints cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 97%] Built target testReactionFingerprints --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o --- [ 97%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/all --- --- Code/GraphMol/ChemReactions/testEnumeration --- [ 97%] Linking CXX executable testEnumeration cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -o testEnumeration -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [ 97%] Built target testEnumeration --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o --- [ 97%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o --- [ 98%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o --- [ 98%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp --- lib/libRDKitMolDraw2D.so.1.2018.03.2 --- [ 98%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so [ 98%] Built target MolDraw2D --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/all --- /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/all --- /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend --- --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend --- --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/all --- Scanning dependencies of target moldraw2DTest1 /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o --- [ 98%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D/test1.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/all --- Scanning dependencies of target moldraw2DRxnTest1 /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o --- [ 98%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -pthread -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D/rxn_test1.cpp --- Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/all --- /usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend --- Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake Scanning dependencies of target rdMolDraw2D /usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build --- Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o --- [ 98%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- --- rdkit/Chem/rdChemReactions.so --- [ 99%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [ 99%] Built target rdChemReactions --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake Scanning dependencies of target rdmolops /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o --- [100%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/rdmolops.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/all --- --- Code/GraphMol/MolDraw2D/moldraw2DRxnTest1 --- [100%] Linking CXX executable moldraw2DRxnTest1 cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [100%] Built target moldraw2DRxnTest1 --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o --- [100%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/bin/c++ -DBUILD_COORDGEN_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/construction/science/rdkit/rdkit-Release_2018_03_2/External -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2018_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -I/construction/science/rdkit/rdkit-Release_2018_03_2/External/boost-numeric-bindings -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -fPIC -pthread -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2018_03_2/Code/GraphMol/Wrap/MolOps.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/all --- --- Code/GraphMol/MolDraw2D/moldraw2DTest1 --- [100%] Linking CXX executable moldraw2DTest1 cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread [100%] Built target moldraw2DTest1 --- Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/all --- --- rdkit/Chem/Draw/rdMolDraw2D.so --- [100%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/local/lib/libboost_serialization.so [100%] Built target rdMolDraw2D --- Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all --- --- Code/GraphMol/ChemReactions/testReaction --- [100%] Linking CXX executable testReaction cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 [100%] Built target testReaction --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- --- rdkit/Chem/rdmolops.so --- [100%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o -Wl,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/local/lib/libboost_serialization.so [100%] Built target rdmolops /usr/local/bin/cmake -E cmake_progress_start /construction/science/rdkit/.build/CMakeFiles 0 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> rdkit-2018.03.2 depends on package: py27-numpy>0 - found ===> rdkit-2018.03.2 depends on package: py27-matplotlib>0 - not found ===> Installing existing package /packages/All/py27-matplotlib-2.1.2_2.txz Installing py27-matplotlib-2.1.2_2... `-- Installing atk-2.24.0... | `-- Installing glib-2.50.3_4,1... | | `-- Installing libiconv-1.14_11... | | 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For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from xmlcatmgr-2.2_2: The following catalogs are installed: 1) /usr/local/share/sgml/catalog The top level catalog for SGML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 2) /usr/local/share/sgml/catalog.ports This catalog is for handling SGML stuff installed under /usr/local/share/sgml. It is changed by ports/packages. 3) /usr/local/share/xml/catalog The top level catalog for XML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 4) /usr/local/share/xml/catalog.ports This catalog is for handling XML stuff installed under /usr/local/share/xml. It is changed by ports/packages. ===> rdkit-2018.03.2 depends on package: py27-matplotlib>0 - found ===> Returning to build of rdkit-2018.03.2 ===> rdkit-2018.03.2 depends on package: py27-pillow>0 - not found ===> Installing existing package /packages/All/py27-pillow-5.0.0.txz Installing py27-pillow-5.0.0... `-- Installing openjpeg-2.3.0... | `-- Installing lcms2-2.9... | `-- Extracting lcms2-2.9: .......... done `-- Extracting openjpeg-2.3.0: .......... done `-- Installing webp-1.0.0... | `-- Installing giflib-5.1.4... | `-- Extracting giflib-5.1.4: .......... done `-- Extracting webp-1.0.0: .......... done Extracting py27-pillow-5.0.0: .......... done ===> rdkit-2018.03.2 depends on package: py27-pillow>0 - found ===> Returning to build of rdkit-2018.03.2 ===> rdkit-2018.03.2 depends on package: py27-reportlab>0 - not found ===> Installing existing package /packages/All/py27-reportlab-3.2.0.txz Installing py27-reportlab-3.2.0... `-- Installing adobe-cmaps-20051217_3... `-- Extracting adobe-cmaps-20051217_3: .......... done Extracting py27-reportlab-3.2.0: .......... done ===> rdkit-2018.03.2 depends on package: py27-reportlab>0 - found ===> Returning to build of rdkit-2018.03.2 ===> rdkit-2018.03.2 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for rdkit-2018.03.2 ===> Generating temporary packing list /usr/local/bin/cmake -H/construction/science/rdkit/rdkit-Release_2018_03_2 -B/construction/science/rdkit/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/rdkit/.build/CMakeFiles /construction/science/rdkit/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make 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/construction/science/rdkit/rdkit-Release_2018_03_2/Code/ChemicalFeatures /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ChemicalFeatures /construction/science/rdkit/.build/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build [100%] Built target testChemicalFeatures /usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2018_03_2 /construction/science/rdkit/rdkit-Release_2018_03_2/Code/ChemicalFeatures/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake /usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build [100%] Built target rdChemicalFeatures /usr/local/bin/cmake -E cmake_progress_start /construction/science/rdkit/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall /usr/bin/make -f External/CoordGen/CMakeFiles/coordgenlib.dir/build.make External/CoordGen/CMakeFiles/coordgenlib.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitcoordgenlib.so cd /construction/science/rdkit/.build/External/CoordGen && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/coordgenlib.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitcoordgenlib.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitcoordgenlib.so.1.2018.03.2 CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmentBuilder.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmenter.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMacrocycleBuilder.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMinimizer.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizer.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerAtom.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerBond.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerFragment.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerRing.cpp.o ../../lib/libRDKitmaeparser.so.1.2018.03.2 cd /construction/science/rdkit/.build/External/CoordGen && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitcoordgenlib.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitcoordgenlib.so.1 CMakeFiles/CMakeRelink.dir/libRDKitcoordgenlib.so /usr/bin/make -f External/CoordGen/CMakeFiles/maeparser.dir/build.make External/CoordGen/CMakeFiles/maeparser.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitmaeparser.so cd /construction/science/rdkit/.build/External/CoordGen && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/maeparser.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitmaeparser.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitmaeparser.so.1.2018.03.2 CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o cd /construction/science/rdkit/.build/External/CoordGen && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitmaeparser.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitmaeparser.so.1 CMakeFiles/CMakeRelink.dir/libRDKitmaeparser.so /usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdCoordGen.so cd /construction/science/rdkit/.build/External/CoordGen/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdCoordGen.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdCoordGen.so CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -Wl,-rpath,/usr/local/lib ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so.1.2018.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -pthread cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so /usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so cd /construction/science/rdkit/.build/Code/RDBoost && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitRDBoost.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so.1.2018.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/usr/local/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so -pthread cd /construction/science/rdkit/.build/Code/RDBoost && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so /usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdBase.so cd /construction/science/rdkit/.build/Code/RDBoost/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/usr/local/lib ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitDataStructs.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so.1.2018.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so /usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/cDataStructs.so cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/usr/local/lib ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so.1.2018.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so /usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdGeometry.so cd /construction/science/rdkit/.build/Code/Geometry/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/usr/local/lib ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitAlignment.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so.1.2018.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so.1 CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so /usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdAlignment.so cd /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so.1.2018.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitOptimizer.so cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitOptimizer.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitOptimizer.so.1.2018.03.2 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CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitForceField.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitForceField.so.1 CMakeFiles/CMakeRelink.dir/libRDKitForceField.so /usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdForceField.so cd /construction/science/rdkit/.build/Code/ForceField/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/usr/local/lib ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so.1.2018.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so /usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/DistGeom.so cd /construction/science/rdkit/.build/Code/DistGeom/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/usr/local/lib ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make 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Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitGraphMol.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so.1.2018.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so.1 CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitDepictor.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so.1.2018.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so /usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdDepictor.so cd 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../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so.1.2018.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitFileParsers.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so.1.2018.03.2 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so.1.2018.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitChemReactions.so cd 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../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitChemReactions.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitChemReactions.so.1 CMakeFiles/CMakeRelink.dir/libRDKitChemReactions.so /usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdChemReactions.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so.1.2018.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so.1 CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so.1.2018.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitFilterCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing 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CMakeFiles/CMakeRelink.dir/libRDKitFilterCatalog.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFilterCatalog.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFilterCatalog.so /usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdfiltercatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so.1.2018.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so /usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdfragcatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 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../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDescriptors.so cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated 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../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make 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../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitFingerprints.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFingerprints.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFingerprints.so /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so.1.2018.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so.1 CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so /usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdPartialCharges.so cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolTransforms.so.1.2018.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd 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-Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitForceFieldHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 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/construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitForceFieldHelpers.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitForceFieldHelpers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitForceFieldHelpers.so /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdForceFieldHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDistGeomHelpers.so cd 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../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDistGeomHelpers.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDistGeomHelpers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDistGeomHelpers.so /usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdDistGeom.so cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 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../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolAlign.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so.1.2018.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so /usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolChemicalFeatures.so cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolChemicalFeatures.so.1.2018.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/bin/cmake 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CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so.1.2018.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so /usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdShapeHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so.1.2018.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so /usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so.1.2018.03.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -Wl,-rpath,/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so /usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolDraw2D.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/local/lib/libboost_serialization.so /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitFMCS.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so.1.2018.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so /usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdFMCS.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolHash.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so.1.2018.03.2 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so /usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolHash.so cd /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMMPA.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so.1.2018.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so /usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMMPA.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitStructChecker.so cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitStructChecker.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitStructChecker.so.1.2018.03.2 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitStructChecker.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitStructChecker.so.1 CMakeFiles/CMakeRelink.dir/libRDKitStructChecker.so /usr/bin/make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdStructChecker.so cd /construction/science/rdkit/.build/Code/GraphMol/StructChecker/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so.1.2018.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so.1 CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so /usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdReducedGraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitTrajectory.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so.1.2018.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so.1 CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so.1.2018.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so /usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdSubstructLibrary.so cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so.1.2018.03.2 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so /usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdRGroupDecomposition.so cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/usr/local/lib ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitcoordgenlib.so.1.2018.03.2 ../../../../lib/libRDKitmaeparser.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so.1.2018.03.2 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so /usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolInterchange.so cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing 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../../../../lib/libRDKitRDBoost.so.1.2018.03.2 /usr/local/lib/libpython2.7.so /usr/local/lib/libboost_python27.so /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdmolfiles.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o 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Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdSimDivPickers.so cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -o CMakeFiles/CMakeRelink.dir/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/usr/local/lib ../../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../../lib/libRDKithc.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 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Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitInfoTheory.so cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/relink.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitInfoTheory.so.1.2018.03.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -pthread cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitInfoTheory.so.1.2018.03.2 CMakeFiles/CMakeRelink.dir/libRDKitInfoTheory.so.1 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