=> Building science/py-pymatgen@py27 Started : Friday, 20 JUL 2018 at 20:12:20 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/py-pymatgen XDG_CONFIG_HOME=/construction/science/py-pymatgen HOME=/construction/science/py-pymatgen TMPDIR="/tmp" PATH=/construction/science/py-pymatgen/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-pymatgen XDG_CONFIG_HOME=/construction/science/py-pymatgen HOME=/construction/science/py-pymatgen TMPDIR="/tmp" PATH=/construction/science/py-pymatgen/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-pymatgen/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py27-pymatgen" EXAMPLESDIR="share/examples/py27-pymatgen" DATADIR="share/py27-pymatgen" WWWDIR="www/py27-pymatgen" ETCDIR="etc/py27-pymatgen" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py27-pymatgen DOCSDIR=/usr/local/share/doc/py27-pymatgen EXAMPLESDIR=/usr/local/share/examples/py27-pymatgen WWWDIR=/usr/local/www/py27-pymatgen ETCDIR=/usr/local/etc/py27-pymatgen -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License MIT accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-pymatgen-2018.6.11_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> py27-pymatgen-2018.6.11_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-pymatgen-2018.6.11_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License MIT accepted by the user => pymatgen-2018.6.11.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/pymatgen/pymatgen-2018.6.11.tar.gz pymatgen-2018.6.11.tar.gz 1700 kB 0 Bps ===> Fetching all distfiles required by py27-pymatgen-2018.6.11_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by py27-pymatgen-2018.6.11_1 for building => SHA256 Checksum OK for pymatgen-2018.6.11.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License MIT accepted by the user ===> Fetching all distfiles required by py27-pymatgen-2018.6.11_1 for building ===> Extracting for py27-pymatgen-2018.6.11_1 => SHA256 Checksum OK for pymatgen-2018.6.11.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-pymatgen-2018.6.11_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-pymatgen-2018.6.11_1 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.14.3,1.txz Installing py27-numpy-1.14.3,1... `-- Installing gcc5-5.5.0_4... | `-- Installing binutils-2.30_3,1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Extracting binutils-2.30_3,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0_1... | | `-- Installing mpfr-4.0.1... | | `-- Extracting mpfr-4.0.1: .......... done | `-- Extracting mpc-1.1.0_1: ......... done `-- Extracting gcc5-5.5.0_4: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing py27-setuptools-39.2.0... | `-- Installing python27-2.7.15... | | `-- Installing expat-2.2.5... | | `-- Extracting expat-2.2.5: .......... done | | `-- Installing libffi-3.2.1_2... | | `-- Extracting libffi-3.2.1_2: .......... done | | `-- Installing libressl-2.7.4... | | `-- Extracting libressl-2.7.4: .......... done | | `-- Installing ncurses-6.0.0s20171223_1... | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Installing readline-7.0.3_1... | | `-- Extracting readline-7.0.3_1: .......... done | `-- Extracting python27-2.7.15: .......... done `-- Extracting py27-setuptools-39.2.0: .......... done `-- Installing suitesparse-5.2.0... | `-- Installing lapack-3.5.0_4... | | `-- Installing blas-3.5.0_4... | | `-- Extracting blas-3.5.0_4: ....... done | `-- Extracting lapack-3.5.0_4: .......... done | `-- Installing metis-5.1.0_4... | `-- Extracting metis-5.1.0_4: .......... done `-- Extracting suitesparse-5.2.0: .......... done Extracting py27-numpy-1.14.3,1: .......... done Message from gcc5-5.5.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from metis-5.1.0_4: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-pymatgen-2018.6.11_1 depends on package: py27-numpy>0 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-setuptools>0 - found ===> py27-pymatgen-2018.6.11_1 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-pymatgen-2018.6.11_1 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-pymatgen-2018.6.11_1 running build running build_py creating build creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen copying pymatgen/dao.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen copying pymatgen/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization copying pymatgen/optimization/linear_assignment_numpy.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization copying pymatgen/optimization/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/local_env.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/structure_analyzer.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/nmr.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/substrate_analyzer.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/graphs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/phase_diagram.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/interface_reactions.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/thermochemistry.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/surface_analysis.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/molecule_matcher.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/eos.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/pourbaix_diagram.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/find_dimension.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/reaction_calculator.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/molecule_structure_comparator.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/bond_valence.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/piezo.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/quasiharmonic.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/path_finder.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/excitation.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/ewald.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/adsorption.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/energy_models.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/wulff.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/diffusion_analyzer.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/transition_state.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/structure_matcher.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/phonon copying pymatgen/phonon/bandstructure.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/phonon copying pymatgen/phonon/plotter.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/phonon copying pymatgen/phonon/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/phonon copying pymatgen/phonon/dos.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/phonon creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/analyzer.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/maggroups.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/structure.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/bandstructure.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/groups.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/settings.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/ext copying pymatgen/ext/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/ext copying pymatgen/ext/jhu.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/ext copying pymatgen/ext/cod.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/ext copying pymatgen/ext/matproj.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/ext creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis copying pymatgen/vis/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis copying pymatgen/vis/structure_vtk.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis copying pymatgen/vis/plotters.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis copying pymatgen/vis/structure_chemview.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure copying pymatgen/electronic_structure/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure copying pymatgen/electronic_structure/core.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure copying pymatgen/electronic_structure/dos.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure copying pymatgen/electronic_structure/cohp.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure copying pymatgen/electronic_structure/bandstructure.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure copying pymatgen/electronic_structure/boltztrap.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure copying pymatgen/electronic_structure/plotter.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries copying pymatgen/entries/post_processors_abc.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries copying pymatgen/entries/entry_tools.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries copying pymatgen/entries/computed_entries.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries copying pymatgen/entries/exp_entries.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries copying pymatgen/entries/compatibility.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries copying pymatgen/entries/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/feff_input_generation.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/pmg_analyze.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/feff_plot_cross_section.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/pmg_structure.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/pmg_potcar.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/get_environment.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/pmg_plot.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/gaussian_analyzer.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/pmg.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/feff_plot_dos.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/pmg_query.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/pmg_config.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli copying pymatgen/cli/pydii.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line copying pymatgen/command_line/aconvasp_caller.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line copying pymatgen/command_line/enumlib_caller.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line copying pymatgen/command_line/critic2_caller.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line copying pymatgen/command_line/bader_caller.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line copying pymatgen/command_line/gulp_caller.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line copying pymatgen/command_line/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/nwchem.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/xr.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/xcrysden.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/gaussian.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/zeopp.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/phonopy.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/ase.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/lobster.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/cssr.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/aiida.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/xyz.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/lmto.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/adf.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/babel.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/atat.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/pwscf.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/cif.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/qchem.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io copying pymatgen/io/fiesta.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps copying pymatgen/apps/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/alchemy copying pymatgen/alchemy/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/alchemy copying pymatgen/alchemy/filters.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/alchemy copying pymatgen/alchemy/transmuters.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/alchemy copying pymatgen/alchemy/materials.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/alchemy creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/surface.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/units.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/libxcfunc.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/spectrum.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/bonds.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/xcfunc.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/operations.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/composition.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/molecular_orbitals.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/sites.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/structure.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/periodic_table.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/lattice.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/ion.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations copying pymatgen/transformations/transformation_abc.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations copying pymatgen/transformations/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations copying pymatgen/transformations/site_transformations.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations copying pymatgen/transformations/advanced_transformations.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations copying pymatgen/transformations/defect_transformations.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations copying pymatgen/transformations/standard_transformations.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/num.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/plotting.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/provenance.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/convergence.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/io_utils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/serialization.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/testing.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/string.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util copying pymatgen/util/coord.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity copying pymatgen/analysis/elasticity/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity copying pymatgen/analysis/elasticity/stress.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity copying pymatgen/analysis/elasticity/strain.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity copying pymatgen/analysis/elasticity/elastic.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity copying pymatgen/analysis/elasticity/tensors.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/magnetism copying pymatgen/analysis/magnetism/analyzer.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/magnetism copying pymatgen/analysis/magnetism/jahnteller.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/magnetism copying pymatgen/analysis/magnetism/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/magnetism creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/xas copying pymatgen/analysis/xas/spectrum.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/xas copying pymatgen/analysis/xas/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/xas creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects copying pymatgen/analysis/defects/dilute_solution_model.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects copying pymatgen/analysis/defects/point_defects.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects copying pymatgen/analysis/defects/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects copying pymatgen/analysis/defects/surf_error.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/xrd.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/neutron.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/core.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/hhi copying pymatgen/analysis/hhi/hhi.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/hhi copying pymatgen/analysis/hhi/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/hhi creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction copying pymatgen/analysis/structure_prediction/substitutor.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction copying pymatgen/analysis/structure_prediction/substitution_probability.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction copying pymatgen/analysis/structure_prediction/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction copying pymatgen/analysis/structure_prediction/volume_predictor.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/ferroelectricity copying pymatgen/analysis/ferroelectricity/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/ferroelectricity copying pymatgen/analysis/ferroelectricity/polarization.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/ferroelectricity creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv copying pymatgen/analysis/chemenv/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/cost copying pymatgen/analysis/cost/cost.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/cost copying pymatgen/analysis/cost/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/cost creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/func_utils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/defs_utils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/math_utils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/strategy_files copying pymatgen/analysis/chemenv/coordination_environments/strategy_files/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/strategy_files creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/vasp/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/vasp/outputs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/vasp/sets.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/vasp/inputs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/helpers.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/launcher.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/abiobjects.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/calculations.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/flows.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/qjobs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/utils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/abiinspect.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/wrappers.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/netcdf.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/abitimer.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/qadapters.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/scheduler_error_handlers.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/events.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/nodes.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/scheduler_error_parsers.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/db.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/works.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/tasks.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/pseudos.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit copying pymatgen/io/abinit/qutils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff copying pymatgen/io/feff/outputs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff copying pymatgen/io/feff/inputs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff copying pymatgen/io/feff/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff copying pymatgen/io/feff/sets.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/exciting copying pymatgen/io/exciting/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/exciting copying pymatgen/io/exciting/inputs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/exciting creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io copying pymatgen/io/qchem_io/utils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io copying pymatgen/io/qchem_io/sets.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io copying pymatgen/io/qchem_io/inputs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io copying pymatgen/io/qchem_io/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io copying pymatgen/io/qchem_io/outputs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps copying pymatgen/io/lammps/utils.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps copying pymatgen/io/lammps/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps copying pymatgen/io/lammps/data.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps copying pymatgen/io/lammps/sets.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps copying pymatgen/io/lammps/output.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps copying pymatgen/io/lammps/input.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery copying pymatgen/apps/battery/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery copying pymatgen/apps/battery/battery_abc.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery copying pymatgen/apps/battery/plotter.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery copying pymatgen/apps/battery/insertion_battery.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery copying pymatgen/apps/battery/analyzer.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery copying pymatgen/apps/battery/conversion_battery.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/borg copying pymatgen/apps/borg/hive.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/borg copying pymatgen/apps/borg/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/borg copying pymatgen/apps/borg/queen.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/borg copying pymatgen/analysis/bonds_jmol_ob.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/icsd_bv.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/bvparam_1991.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/op_params.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/cn_opt_params.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/analysis/ionic_radii.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis copying pymatgen/symmetry/symm_data.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/symm_ops.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/symm_data.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/symmetry/symm_ops.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry copying pymatgen/vis/ElementColorSchemes.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis copying pymatgen/entries/MITCompatibility.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries copying pymatgen/entries/MPCompatibility.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries copying pymatgen/command_line/OxideTersoffPotentials -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line copying pymatgen/core/libxc_docs.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/bond_lengths.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/reconstructions_archive.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/func_groups.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core copying pymatgen/core/periodic_table.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/VO2.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/TiO2.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/K2O2.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/Li2O.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/Li3V2(PO4)3.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/Sn.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/Li10GeP2S12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/LiFePO4.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/NaFePO4.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/Li2O2.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/BaNiO3.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/He_BCC.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/Si.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/Graphite.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/CsCl.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/util/structures/SrTiO3.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures copying pymatgen/analysis/defects/ionic_radii.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects copying pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction copying pymatgen/analysis/hhi/hhi_data.csv -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/hhi copying pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction copying pymatgen/analysis/cost/costdb_elements.csv -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/cost copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/strategy_files/ImprovedConfidenceCutoffDefaultParameters.json -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/strategy_files copying pymatgen/io/vasp/VASPIncarBase.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/vasp/MITRelaxSet.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/vasp/vdW_parameters.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/vasp/MPRelaxSet.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/vasp/MVLGWSet.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp copying pymatgen/io/feff/MPXANESSet.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff copying pymatgen/io/feff/MPEXELFSSet.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff copying pymatgen/io/feff/MPELNESSet.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff copying pymatgen/io/feff/MPEXAFSSet.yaml -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff running build_ext building 'pymatgen.optimization.linear_assignment' extension creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -c pymatgen/optimization/linear_assignment.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization/linear_assignment.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pymatgen/optimization/linear_assignment.c:275: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization/linear_assignment.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization/linear_assignment.so building 'pymatgen.util.coord_cython' extension creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -c pymatgen/util/coord_cython.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/coord_cython.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pymatgen/util/coord_cython.c:486: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/coord_cython.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/coord_cython.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-pymatgen-2018.6.11_1 depends on package: py27-numpy>0 - found ===> py27-pymatgen-2018.6.11_1 depends on package: py27-matplotlib>=1.5 - not found ===> Installing existing package /packages/All/py27-matplotlib-2.1.2_2.txz Installing py27-matplotlib-2.1.2_2... `-- Installing atk-2.24.0... | `-- Installing glib-2.50.3_4,1... | | `-- Installing libiconv-1.14_11... | | `-- Extracting libiconv-1.14_11: .......... done | | `-- Installing pcre-8.42... | | `-- Extracting pcre-8.42: .......... done | | `-- Installing perl5-5.26.2... | | `-- Extracting perl5-5.26.2: .......... done | `-- Extracting glib-2.50.3_4,1: .......... done No schema files found: doing nothing. `-- Extracting atk-2.24.0: .......... done `-- Installing cairo-1.14.8_1,2... | `-- Installing dri2proto-2.8... | `-- Extracting dri2proto-2.8: .... done | `-- Installing fontconfig-2.12.6,1... | | `-- Installing freetype2-2.9.1... | | `-- Extracting freetype2-2.9.1: .......... done | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | `-- Installing glproto-1.4.17... | `-- Extracting glproto-1.4.17: ...... done | `-- Installing libX11-1.6.5,1... | | `-- Installing kbproto-1.0.7... | | `-- Extracting kbproto-1.0.7: .......... done | | `-- Installing libXau-1.0.8_3... | | `-- Installing xproto-7.0.31... | | `-- Extracting xproto-7.0.31: .......... done | | `-- Extracting libXau-1.0.8_3: .......... done | | `-- Installing libXdmcp-1.1.2... | | `-- Extracting libXdmcp-1.1.2: ......... done | | `-- Installing libxcb-1.13... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: .... done | | `-- Installing libxml2-2.9.7... | | `-- Extracting libxml2-2.9.7: .......... done | | `-- Extracting libxcb-1.13: .......... done | `-- Extracting libX11-1.6.5,1: .......... done | `-- Installing libXext-1.3.3_1,1... | | `-- Installing xextproto-7.3.0... | | `-- Extracting xextproto-7.3.0: .......... done | `-- Extracting libXext-1.3.3_1,1: .......... done | `-- Installing libXrender-0.9.10... | | `-- Installing renderproto-0.11.1... | | `-- Extracting renderproto-0.11.1: .... done | `-- Extracting libXrender-0.9.10: .......... done | `-- Installing mesa-libs-18.1.2... | | `-- Installing libXdamage-1.1.4_3... | | `-- Installing damageproto-1.2.1... | | `-- Extracting damageproto-1.2.1: .... done | | `-- Installing libXfixes-5.0.3... | | | `-- Installing fixesproto-5.0... | | | `-- Extracting fixesproto-5.0: .... done | | `-- Extracting libXfixes-5.0.3: .......... done | | `-- Extracting libXdamage-1.1.4_3: ...... done | | `-- Installing libXxf86vm-1.1.4_1... | | `-- Installing xf86vidmodeproto-2.3.1... | | `-- Extracting xf86vidmodeproto-2.3.1: .... done | | `-- Extracting libXxf86vm-1.1.4_1: .......... done | | `-- Installing libdrm-2.4.92,1... | | `-- Installing libpciaccess-0.13.5... | | | `-- Installing pciids-20180428... | | | `-- Extracting pciids-20180428: ..... done | | `-- Extracting libpciaccess-0.13.5: ......... done | | `-- Extracting libdrm-2.4.92,1: .......... done | | `-- Installing libelf-0.8.13_3... | | `-- Extracting libelf-0.8.13_3: .......... done | | `-- Installing libxshmfence-1.2_2... | | `-- Extracting libxshmfence-1.2_2: ......... done | `-- Extracting mesa-libs-18.1.2: .......... done | `-- Installing pixman-0.34.0... | `-- Extracting pixman-0.34.0: .......... done | `-- Installing png-1.6.34... | `-- Extracting png-1.6.34: .......... done | `-- Installing xcb-util-renderutil-0.3.9_1... | | `-- Installing xcb-util-0.4.0_2,1... | | `-- Extracting xcb-util-0.4.0_2,1: .......... done | `-- Extracting xcb-util-renderutil-0.3.9_1: ...... done `-- Extracting cairo-1.14.8_1,2: .......... done `-- Installing gdk-pixbuf2-2.36.11... | `-- Installing jasper-1.900.1_17... | | `-- Installing jpeg-turbo-1.5.3... | | `-- Extracting jpeg-turbo-1.5.3: .......... done | `-- Extracting jasper-1.900.1_17: .......... done | `-- Installing libXi-1.7.9,1... | | `-- Installing inputproto-2.3.2... | | `-- Extracting inputproto-2.3.2: ........ done | `-- Extracting libXi-1.7.9,1: .......... done | `-- Installing libXt-1.1.5,1... | | `-- Installing libICE-1.0.9_1,1... | | `-- Extracting libICE-1.0.9_1,1: .......... done | | `-- Installing libSM-1.2.2_3,1... | | `-- Extracting libSM-1.2.2_3,1: .......... done | `-- Extracting libXt-1.1.5,1: .......... done | `-- Installing shared-mime-info-1.8... | `-- Extracting shared-mime-info-1.8: .......... done | `-- Installing tiff-4.0.9_1... | | `-- Installing jbigkit-2.1_1... | | `-- Extracting jbigkit-2.1_1: .......... done | `-- Extracting tiff-4.0.9_1: .......... done `-- Extracting gdk-pixbuf2-2.36.11: .......... done `-- Installing gtk2-2.24.32... | `-- Installing cups-2.2.8_1... | | `-- Installing avahi-app-0.6.31_6... | | `-- Installing dbus-glib-0.108... | | | `-- Installing dbus-1.10.16_1... ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | | `-- Extracting dbus-1.10.16_1: ......... done | | `-- Extracting dbus-glib-0.108: .......... done | | `-- Installing gdbm-1.13_1... | | `-- Extracting gdbm-1.13_1: .......... done | | `-- Installing gnome_subr-1.0... | | `-- Extracting gnome_subr-1.0: .... done | | `-- Installing gobject-introspection-1.50.0_1,1... | | `-- Extracting gobject-introspection-1.50.0_1,1: .......... done | | `-- Installing libdaemon-0.14_1... | | `-- Extracting libdaemon-0.14_1: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | | `-- Extracting avahi-app-0.6.31_6: .......... done | | `-- Installing gnutls-3.5.18... | | `-- Installing ca_root_nss-3.38... | | `-- Extracting ca_root_nss-3.38: ........ done | | `-- Installing libidn2-2.0.5... | | | `-- Installing libunistring-0.9.10... | | | `-- Extracting libunistring-0.9.10: .......... done | | `-- Extracting libidn2-2.0.5: .......... done | | `-- Installing libtasn1-4.13... | | `-- Extracting libtasn1-4.13: .......... done | | `-- Installing nettle-3.4... | | `-- Extracting nettle-3.4: .......... done | | `-- Installing p11-kit-0.23.12... | | `-- Extracting p11-kit-0.23.12: .......... done | | `-- Installing trousers-0.3.14_2... | | | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | `-- Extracting trousers-0.3.14_2: .......... done | | `-- Extracting gnutls-3.5.18: .......... done | | `-- Installing libpaper-1.1.24.4... | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | `-- Extracting cups-2.2.8_1: .......... done | `-- Installing gtk-update-icon-cache-2.24.32... | | `-- Installing hicolor-icon-theme-0.15... | | `-- Extracting hicolor-icon-theme-0.15: . done | | `-- Installing libXcomposite-0.4.4_3,1... | | `-- Installing compositeproto-0.4.2... | | `-- Extracting compositeproto-0.4.2: ....... done | | `-- Extracting libXcomposite-0.4.4_3,1: .......... done | | `-- Installing libXcursor-1.1.15... | | `-- Extracting libXcursor-1.1.15: .......... done | | `-- Installing libXinerama-1.1.3_3,1... | | `-- Installing xineramaproto-1.2.1... | | `-- Extracting xineramaproto-1.2.1: .. done | | `-- Extracting libXinerama-1.1.3_3,1: .......... done | | `-- Installing libXrandr-1.5.1... | | `-- Installing randrproto-1.5.0... | | `-- Extracting randrproto-1.5.0: ....... done | | `-- Extracting libXrandr-1.5.1: .......... done | | `-- Installing pango-1.42.0... | | `-- Installing encodings-1.0.4_4,1... | | | `-- Installing font-util-1.3.1... | | | `-- Extracting font-util-1.3.1: .......... done | | `-- Extracting encodings-1.0.4_4,1: .......... done | | `-- Installing fribidi-0.19.7... | | `-- Extracting fribidi-0.19.7: .......... done | | `-- Installing harfbuzz-1.8.2... | | | `-- Installing graphite2-1.3.11... | | | `-- Extracting graphite2-1.3.11: .......... done | | `-- Extracting harfbuzz-1.8.2: .......... done | | `-- Installing libXft-2.3.2_1... | | `-- Extracting libXft-2.3.2_1: .......... done | | `-- Installing xorg-fonts-truetype-7.7_1... | | | `-- Installing dejavu-2.37... | | | `-- Installing mkfontdir-1.0.7... | | | | `-- Installing mkfontscale-1.1.3... | | | | `-- Installing libfontenc-1.1.3_1... | | | | `-- Extracting libfontenc-1.1.3_1: ......... done | | | | `-- Extracting mkfontscale-1.1.3: ..... done | | | `-- Extracting mkfontdir-1.0.7: ..... done | | | `-- Extracting dejavu-2.37: .......... done | | | `-- Installing font-bh-ttf-1.0.3_3... | | | `-- Extracting font-bh-ttf-1.0.3_3: .......... done | | | `-- Installing font-misc-ethiopic-1.0.3_3... | | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done | | | `-- Installing font-misc-meltho-1.0.3_3... | | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done | | `-- Extracting pango-1.42.0: .......... done | `-- Extracting gtk-update-icon-cache-2.24.32: .... done `-- Extracting gtk2-2.24.32: .......... done `-- Installing libglade2-2.6.4_9... | `-- Installing xmlcatmgr-2.2_2... | `-- Extracting xmlcatmgr-2.2_2: ......... done + Creating /usr/local/share/sgml/catalog + Registering CATALOG catalog.ports (SGML) + Creating /usr/local/share/sgml/catalog.ports + Creating /usr/local/share/xml/catalog + Registering nextCatalog catalog.ports (XML) + Creating /usr/local/share/xml/catalog.ports `-- Extracting libglade2-2.6.4_9: .......... done `-- Installing py27-backports.functools_lru_cache-1.5... | `-- Installing py27-backports-1... | `-- Extracting py27-backports-1: ...... done `-- Extracting py27-backports.functools_lru_cache-1.5: .......... done `-- Installing py27-cycler-0.10.0... | `-- Installing py27-six-1.11.0... | `-- Extracting py27-six-1.11.0: .......... done `-- Extracting py27-cycler-0.10.0: .......... done `-- Installing py27-dateutil-2.6.1... `-- Extracting py27-dateutil-2.6.1: .......... done `-- Installing py27-gobject-2.28.6_8... | `-- Installing py27-cairo-1.14.1... | `-- Extracting py27-cairo-1.14.1: .......... done `-- Extracting py27-gobject-2.28.6_8: .......... done `-- Installing py27-gtk2-2.24.0_5... `-- Extracting py27-gtk2-2.24.0_5: .......... done `-- Installing py27-pyparsing-2.2.0... `-- Extracting py27-pyparsing-2.2.0: .......... done `-- Installing py27-pytz-2018.5,1... `-- Extracting py27-pytz-2018.5,1: .......... done `-- Installing py27-tkinter-2.7.15_6... | `-- Installing tcl86-8.6.8... | `-- Extracting tcl86-8.6.8: .......... done | `-- Installing tk86-8.6.8_2... | | `-- Installing libXScrnSaver-1.2.2_3... | | `-- Installing scrnsaverproto-1.2.2... | | `-- Extracting scrnsaverproto-1.2.2: ... done | | `-- Extracting libXScrnSaver-1.2.2_3: .......... done | `-- Extracting tk86-8.6.8_2: .......... done `-- Extracting py27-tkinter-2.7.15_6: ........ done `-- Installing py27-tornado-5.0.2... | `-- Installing py27-backports_abc-0.5... | `-- Extracting py27-backports_abc-0.5: .......... done | `-- Installing py27-singledispatch-3.4.0.3_1... | `-- Extracting py27-singledispatch-3.4.0.3_1: .......... done `-- Extracting py27-tornado-5.0.2: .......... done Extracting py27-matplotlib-2.1.2_2: .......... done Message from perl5-5.26.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from ca_root_nss-3.38: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from xmlcatmgr-2.2_2: The following catalogs are installed: 1) /usr/local/share/sgml/catalog The top level catalog for SGML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 2) /usr/local/share/sgml/catalog.ports This catalog is for handling SGML stuff installed under /usr/local/share/sgml. It is changed by ports/packages. 3) /usr/local/share/xml/catalog The top level catalog for XML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 4) /usr/local/share/xml/catalog.ports This catalog is for handling XML stuff installed under /usr/local/share/xml. It is changed by ports/packages. ===> py27-pymatgen-2018.6.11_1 depends on package: py27-matplotlib>=1.5 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-monty>=0.9.6 - not found ===> Installing existing package /packages/All/py27-monty-1.0.3.txz Installing py27-monty-1.0.3... Extracting py27-monty-1.0.3: .......... done ===> py27-pymatgen-2018.6.11_1 depends on package: py27-monty>=0.9.6 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-palettable>=2.1.1 - not found ===> Installing existing package /packages/All/py27-palettable-3.1.1.txz Installing py27-palettable-3.1.1... Extracting py27-palettable-3.1.1: .......... done ===> py27-pymatgen-2018.6.11_1 depends on package: py27-palettable>=2.1.1 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-pandas>0 - not found ===> Installing existing package /packages/All/py27-pandas-0.23.0.txz Installing py27-pandas-0.23.0... `-- Installing py27-bottleneck-1.2.1_3... `-- Extracting py27-bottleneck-1.2.1_3: .......... done `-- Installing py27-numexpr-2.6.5... `-- Extracting py27-numexpr-2.6.5: .......... done `-- Installing py27-sqlite3-2.7.15_7... | `-- Installing sqlite3-3.24.0_1... | `-- Extracting sqlite3-3.24.0_1: .......... done `-- Extracting py27-sqlite3-2.7.15_7: ........ done Extracting py27-pandas-0.23.0: .......... done Message from py27-pandas-0.23.0: === Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. === ===> py27-pymatgen-2018.6.11_1 depends on package: py27-pandas>0 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-pydispatcher>=2.0.5 - not found ===> Installing existing package /packages/All/py27-pydispatcher-2.0.5.txz Installing py27-pydispatcher-2.0.5... Extracting py27-pydispatcher-2.0.5: .......... done ===> py27-pymatgen-2018.6.11_1 depends on package: py27-pydispatcher>=2.0.5 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-requests>0 - not found ===> Installing existing package /packages/All/py27-requests-2.18.4.txz Installing py27-requests-2.18.4... `-- Installing py27-certifi-2018.4.16... `-- Extracting py27-certifi-2018.4.16: .......... done `-- Installing py27-chardet-3.0.4... `-- Extracting py27-chardet-3.0.4: .......... done `-- Installing py27-idna-2.6... `-- Extracting py27-idna-2.6: .......... done `-- Installing py27-urllib3-1.22,1... | `-- Installing py27-cryptography-2.1.4... | | `-- Installing py27-asn1crypto-0.22.0... | | `-- Extracting py27-asn1crypto-0.22.0: .......... done | | `-- Installing py27-cffi-1.11.5... | | `-- Installing py27-pycparser-2.18... | | `-- Extracting py27-pycparser-2.18: .......... done | | `-- Extracting py27-cffi-1.11.5: .......... done | | `-- Installing py27-enum34-1.1.6... | | `-- Extracting py27-enum34-1.1.6: .......... done | | `-- Installing py27-ipaddress-1.0.22... | | `-- Extracting py27-ipaddress-1.0.22: .......... done | `-- Extracting py27-cryptography-2.1.4: .......... done | `-- Installing py27-openssl-17.5.0_1... | `-- Extracting py27-openssl-17.5.0_1: .......... done | `-- Installing py27-pysocks-1.6.8... | `-- Extracting py27-pysocks-1.6.8: .......... done `-- Extracting py27-urllib3-1.22,1: .......... done Extracting py27-requests-2.18.4: .......... done Message from py27-urllib3-1.22,1: Be careful, support of IPv6 is broken with PySocks 1.5.7. ===> py27-pymatgen-2018.6.11_1 depends on package: py27-requests>0 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-ruamel.yaml>=0.15.6 - not found ===> Installing existing package /packages/All/py27-ruamel.yaml-0.15.40.txz Installing py27-ruamel.yaml-0.15.40... Extracting py27-ruamel.yaml-0.15.40: .......... done ===> py27-pymatgen-2018.6.11_1 depends on package: py27-ruamel.yaml>=0.15.6 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-scipy>=1.0.1 - not found ===> Installing existing package /packages/All/py27-scipy-1.1.0.txz Installing py27-scipy-1.1.0... Extracting py27-scipy-1.1.0: .......... done ===> py27-pymatgen-2018.6.11_1 depends on package: py27-scipy>=1.0.1 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-six>0 - found ===> py27-pymatgen-2018.6.11_1 depends on package: py27-spglib>=1.9.9.44 - not found ===> Installing existing package /packages/All/py27-spglib-1.10.3.65.txz Installing py27-spglib-1.10.3.65... Extracting py27-spglib-1.10.3.65: .......... done ===> py27-pymatgen-2018.6.11_1 depends on package: py27-spglib>=1.9.9.44 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-sympy>0 - not found ===> Installing existing package /packages/All/py27-sympy-1.1.1_1.txz Installing py27-sympy-1.1.1_1... `-- Installing py27-mpmath-1.0.0... `-- Extracting py27-mpmath-1.0.0: .......... done Extracting py27-sympy-1.1.1_1: .......... done ===> py27-pymatgen-2018.6.11_1 depends on package: py27-sympy>0 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-tabulate>0 - not found ===> Installing existing package /packages/All/py27-tabulate-0.8.2_1.txz Installing py27-tabulate-0.8.2_1... Extracting py27-tabulate-0.8.2_1: .......... done ===> py27-pymatgen-2018.6.11_1 depends on package: py27-tabulate>0 - found ===> Returning to build of py27-pymatgen-2018.6.11_1 ===> py27-pymatgen-2018.6.11_1 depends on package: py27-setuptools>0 - found ===> py27-pymatgen-2018.6.11_1 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-pymatgen-2018.6.11_1 ===> Generating temporary packing list running install running build running build_py running build_ext running install_lib creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7 creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations/site_transformations.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations/standard_transformations.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations/defect_transformations.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations/advanced_transformations.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/transformations/transformation_abc.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/optimization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization/linear_assignment_numpy.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/optimization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/optimization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/optimization/linear_assignment.so -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/optimization creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line/aconvasp_caller.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line/critic2_caller.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line/OxideTersoffPotentials -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line/gulp_caller.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line/bader_caller.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/command_line/enumlib_caller.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis/structure_vtk.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis/ElementColorSchemes.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis/structure_chemview.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/vis/plotters.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/excitation.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/surface_analysis.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/eos.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/quasiharmonic.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/molecule_structure_comparator.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/ferroelectricity copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/ferroelectricity/polarization.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/ferroelectricity copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/ferroelectricity/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/ferroelectricity copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/ionic_radii.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/bonds_jmol_ob.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/piezo.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/op_params.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/pourbaix_diagram.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/bvparam_1991.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/local_env.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/hhi copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/hhi/hhi.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/hhi copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/hhi/hhi_data.csv -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/hhi copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/hhi/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/hhi creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects/ionic_radii.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects/surf_error.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects/dilute_solution_model.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/defects/point_defects.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/thermochemistry.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/xas copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/xas/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/xas copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/xas/spectrum.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/xas copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/nmr.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/substrate_analyzer.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction/core.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction/xrd.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction/neutron.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction/neutron_scattering_length.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffraction/atomic_scattering_params.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/icsd_bv.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/adsorption.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/find_dimension.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/energy_models.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_matcher.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/path_finder.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/wulff.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/reaction_calculator.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/transition_state.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/molecule_matcher.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/strategy_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/strategy_files/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/strategy_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/strategy_files/ImprovedConfidenceCutoffDefaultParameters.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/strategy_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils/scripts_utils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils/math_utils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils/defs_utils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils/chemenv_config.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils/chemenv_errors.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/chemenv/utils/func_utils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_analyzer.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/cn_opt_params.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/graphs.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/phase_diagram.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/ewald.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/interface_reactions.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/bond_valence.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/cost copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/cost/cost.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/cost copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/cost/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/cost copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/cost/costdb_elements.csv -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/cost creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction/substitution_probability.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction/volume_predictor.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction/substitutor.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/magnetism copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/magnetism/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/magnetism copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/magnetism/jahnteller.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/magnetism copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/magnetism/analyzer.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/magnetism copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/diffusion_analyzer.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity/stress.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity/strain.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity/elastic.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/analysis/elasticity/tensors.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure/plotter.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure/bandstructure.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure/boltztrap.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure/dos.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure/core.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/electronic_structure/cohp.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/coord_cython.so -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/provenance.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/convergence.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/coord.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/string.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/plotting.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/serialization.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/testing.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/num.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/SrTiO3.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/NaFePO4.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/Sn.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/Li3V2(PO4)3.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/Si.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/BaNiO3.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/He_BCC.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/TiO2.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/Li2O.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/VO2.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/CsCl.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/LiFePO4.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/K2O2.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/Li10GeP2S12.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/Li2O2.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/structures/Graphite.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/structures copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/util/io_utils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/pmg.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/feff_plot_cross_section.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/pmg_structure.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/pmg_plot.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/feff_input_generation.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/pmg_config.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/pmg_query.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/pmg_analyze.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/pmg_potcar.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/feff_plot_dos.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/get_environment.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/gaussian_analyzer.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/cli/pydii.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/bandstructure.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/symm_ops.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/groups.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/structure.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/settings.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/maggroups.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/analyzer.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/symm_data.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/symm_data.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/symmetry/symm_ops.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/ext copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/ext/matproj.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/ext copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/ext/cod.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/ext copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/ext/jhu.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/ext copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/ext/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/ext creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/alchemy copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/alchemy/filters.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/alchemy copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/alchemy/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/alchemy copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/alchemy/materials.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/alchemy copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/alchemy/transmuters.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/alchemy copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/dao.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/borg copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/borg/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/borg copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/borg/queen.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/borg copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/borg/hive.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/borg creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery/analyzer.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery/insertion_battery.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery/battery_abc.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery/plotter.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/battery/conversion_battery.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/apps/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/composition.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/bonds.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/operations.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/spectrum.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/lattice.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/molecular_orbitals.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/units.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/libxc_docs.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/periodic_table.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/surface.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/libxcfunc.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/structure.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/bond_lengths.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/sites.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/periodic_table.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/reconstructions_archive.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/xcfunc.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/func_groups.json -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/core/ion.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries/exp_entries.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries/entry_tools.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries/computed_entries.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries/MITCompatibility.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries/MPCompatibility.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries/compatibility.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/entries/post_processors_abc.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io/outputs.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io/utils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io/sets.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem_io/inputs.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/aiida.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps/output.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps/utils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps/data.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps/sets.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lammps/input.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/exciting copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/exciting/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/exciting copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/exciting/inputs.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/exciting copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/gaussian.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff/inputs.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff/MPXANESSet.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff/MPEXELFSSet.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff/sets.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff/MPELNESSet.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff/MPEXAFSSet.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/feff/outputs.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/zeopp.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/xcrysden.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/xyz.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/qchem.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/MVLGWSet.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/MPHSERelaxSet.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/vdW_parameters.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/sets.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/inputs.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/MITRelaxSet.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/outputs.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/MPRelaxSet.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/vasp/VASPIncarBase.yaml -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lobster.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/adf.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/lmto.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/atat.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/babel.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/pwscf.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/fiesta.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/qadapters.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/tasks.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/abitimer.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/pseudos.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/qutils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/utils.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/events.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/scheduler_error_handlers.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/helpers.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/db.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/abiinspect.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/flows.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/calculations.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/nodes.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/works.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/launcher.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/scheduler_error_parsers.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/netcdf.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/wrappers.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/abiobjects.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/abinit/qjobs.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/cssr.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/phonopy.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/xr.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/nwchem.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/cif.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/io/ase.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io creating /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/phonon copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/phonon/bandstructure.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/phonon copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/phonon/dos.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/phonon copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/phonon/plotter.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/phonon copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/pymatgen/phonon/__init__.py -> /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/phonon byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations/site_transformations.py to site_transformations.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations/standard_transformations.py to standard_transformations.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations/defect_transformations.py to defect_transformations.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations/advanced_transformations.py to advanced_transformations.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/transformations/transformation_abc.py to transformation_abc.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/optimization/linear_assignment_numpy.py to linear_assignment_numpy.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/optimization/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line/aconvasp_caller.py to aconvasp_caller.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line/critic2_caller.py to critic2_caller.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line/gulp_caller.py to gulp_caller.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line/bader_caller.py to bader_caller.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/command_line/enumlib_caller.py to enumlib_caller.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis/structure_vtk.py to structure_vtk.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis/structure_chemview.py to structure_chemview.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/vis/plotters.py to plotters.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/excitation.py to excitation.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/surface_analysis.py to surface_analysis.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/eos.py to eos.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/quasiharmonic.py to quasiharmonic.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/molecule_structure_comparator.py to molecule_structure_comparator.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/ferroelectricity/polarization.py to polarization.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/ferroelectricity/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/piezo.py to piezo.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/pourbaix_diagram.py to pourbaix_diagram.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/local_env.py to local_env.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/hhi/hhi.py to hhi.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/hhi/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects/surf_error.py to surf_error.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects/dilute_solution_model.py to dilute_solution_model.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/defects/point_defects.py to point_defects.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/thermochemistry.py to thermochemistry.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/xas/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/xas/spectrum.py to spectrum.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/nmr.py to nmr.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/substrate_analyzer.py to substrate_analyzer.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction/core.py to core.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction/xrd.py to xrd.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction/neutron.py to neutron.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffraction/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/adsorption.py to adsorption.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/find_dimension.py to find_dimension.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/energy_models.py to energy_models.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_matcher.py to structure_matcher.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/path_finder.py to path_finder.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/wulff.py to wulff.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/reaction_calculator.py to reaction_calculator.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/transition_state.py to transition_state.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/molecule_matcher.py to molecule_matcher.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py to coordination_geometry_finder.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py to coordination_geometries.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/voronoi.py to voronoi.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py to structure_environments.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py to chemenv_strategies.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/strategy_files/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils/scripts_utils.py to scripts_utils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils/math_utils.py to math_utils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils/defs_utils.py to defs_utils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils/chemenv_config.py to chemenv_config.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils/chemenv_errors.py to chemenv_errors.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py to coordination_geometry_utils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/chemenv/utils/func_utils.py to func_utils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_analyzer.py to structure_analyzer.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/graphs.py to graphs.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/phase_diagram.py to phase_diagram.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/ewald.py to ewald.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/interface_reactions.py to interface_reactions.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/bond_valence.py to bond_valence.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/cost/cost.py to cost.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/cost/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction/substitution_probability.py to substitution_probability.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction/volume_predictor.py to volume_predictor.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/structure_prediction/substitutor.py to substitutor.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/magnetism/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/magnetism/jahnteller.py to jahnteller.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/magnetism/analyzer.py to analyzer.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/diffusion_analyzer.py to diffusion_analyzer.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity/stress.py to stress.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity/strain.py to strain.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity/elastic.py to elastic.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/analysis/elasticity/tensors.py to tensors.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure/plotter.py to plotter.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure/bandstructure.py to bandstructure.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure/boltztrap.py to boltztrap.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure/dos.py to dos.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure/core.py to core.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/electronic_structure/cohp.py to cohp.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/provenance.py to provenance.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/convergence.py to convergence.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/coord.py to coord.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/string.py to string.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/plotting.py to plotting.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/serialization.py to serialization.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/testing.py to testing.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/num.py to num.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/util/io_utils.py to io_utils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/pmg.py to pmg.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/feff_plot_cross_section.py to feff_plot_cross_section.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/pmg_structure.py to pmg_structure.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/pmg_plot.py to pmg_plot.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/feff_input_generation.py to feff_input_generation.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/pmg_config.py to pmg_config.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/pmg_query.py to pmg_query.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/pmg_analyze.py to pmg_analyze.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/pmg_potcar.py to pmg_potcar.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/feff_plot_dos.py to feff_plot_dos.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/get_environment.py to get_environment.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/gaussian_analyzer.py to gaussian_analyzer.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/cli/pydii.py to pydii.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry/bandstructure.py to bandstructure.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry/groups.py to groups.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry/structure.py to structure.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry/settings.py to settings.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry/maggroups.py to maggroups.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry/analyzer.py to analyzer.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/symmetry/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/ext/matproj.py to matproj.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/ext/cod.py to cod.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/ext/jhu.py to jhu.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/ext/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/alchemy/filters.py to filters.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/alchemy/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/alchemy/materials.py to materials.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/alchemy/transmuters.py to transmuters.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/dao.py to dao.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/borg/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/borg/queen.py to queen.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/borg/hive.py to hive.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery/analyzer.py to analyzer.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery/insertion_battery.py to insertion_battery.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery/battery_abc.py to battery_abc.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery/plotter.py to plotter.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/battery/conversion_battery.py to conversion_battery.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/apps/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/composition.py to composition.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/bonds.py to bonds.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/operations.py to operations.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/spectrum.py to spectrum.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/lattice.py to lattice.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/molecular_orbitals.py to molecular_orbitals.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/units.py to units.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/periodic_table.py to periodic_table.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/surface.py to surface.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/libxcfunc.py to libxcfunc.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/structure.py to structure.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/sites.py to sites.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/xcfunc.py to xcfunc.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/core/ion.py to ion.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries/exp_entries.py to exp_entries.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries/entry_tools.py to entry_tools.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries/computed_entries.py to computed_entries.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries/compatibility.py to compatibility.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/entries/post_processors_abc.py to post_processors_abc.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io/outputs.py to outputs.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io/utils.py to utils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io/sets.py to sets.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem_io/inputs.py to inputs.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/aiida.py to aiida.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps/output.py to output.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps/utils.py to utils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps/data.py to data.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps/sets.py to sets.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lammps/input.py to input.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/exciting/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/exciting/inputs.py to inputs.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/gaussian.py to gaussian.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff/inputs.py to inputs.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff/sets.py to sets.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/feff/outputs.py to outputs.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/zeopp.py to zeopp.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/xcrysden.py to xcrysden.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/xyz.py to xyz.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/qchem.py to qchem.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp/sets.py to sets.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp/inputs.py to inputs.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/vasp/outputs.py to outputs.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lobster.py to lobster.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/adf.py to adf.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/lmto.py to lmto.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/atat.py to atat.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/babel.py to babel.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/pwscf.py to pwscf.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/fiesta.py to fiesta.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/qadapters.py to qadapters.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/tasks.py to tasks.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/abitimer.py to abitimer.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/pseudos.py to pseudos.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/qutils.py to qutils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/utils.py to utils.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/events.py to events.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/scheduler_error_handlers.py to scheduler_error_handlers.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/helpers.py to helpers.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/db.py to db.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/abiinspect.py to abiinspect.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/flows.py to flows.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/calculations.py to calculations.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/nodes.py to nodes.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/works.py to works.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/launcher.py to launcher.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/scheduler_error_parsers.py to scheduler_error_parsers.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/netcdf.py to netcdf.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/wrappers.py to wrappers.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/abiobjects.py to abiobjects.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/abinit/qjobs.py to qjobs.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/cssr.py to cssr.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/phonopy.py to phonopy.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/xr.py to xr.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/nwchem.py to nwchem.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/cif.py to cif.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/io/ase.py to ase.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/phonon/bandstructure.py to bandstructure.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/phonon/dos.py to dos.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/phonon/plotter.py to plotter.pyc byte-compiling /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen/phonon/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpe2Wr2d.py' /usr/local/bin/python2.7 -O /tmp/tmpe2Wr2d.py removing /tmp/tmpe2Wr2d.py running install_egg_info running egg_info writing requirements to pymatgen.egg-info/requires.txt writing pymatgen.egg-info/PKG-INFO writing top-level names to pymatgen.egg-info/top_level.txt writing dependency_links to pymatgen.egg-info/dependency_links.txt writing entry points to pymatgen.egg-info/entry_points.txt reading manifest file 'pymatgen.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'tests/*.*' found under directory 'pymatgen' writing manifest file 'pymatgen.egg-info/SOURCES.txt' Copying pymatgen.egg-info to /construction/science/py-pymatgen/stage/usr/local/lib/python2.7/site-packages/pymatgen-2018.6.11-py2.7.egg-info running install_scripts Installing feff_plot_dos script to /construction/science/py-pymatgen/stage/usr/local/bin Installing get_environment script to /construction/science/py-pymatgen/stage/usr/local/bin Installing gaussian_analyzer script to /construction/science/py-pymatgen/stage/usr/local/bin Installing feff_plot_cross_section script to /construction/science/py-pymatgen/stage/usr/local/bin Installing pydii script to /construction/science/py-pymatgen/stage/usr/local/bin Installing feff_input_generation script to /construction/science/py-pymatgen/stage/usr/local/bin Installing pmg script to /construction/science/py-pymatgen/stage/usr/local/bin writing list of installed files to '/construction/science/py-pymatgen/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/feff_plot_dos --> bin/feff_plot_dos-2.7 Link: @bin/feff_plot_dos --> bin/feff_plot_dos-2.7 Move: bin/get_environment --> bin/get_environment-2.7 Link: @bin/get_environment --> bin/get_environment-2.7 Move: bin/gaussian_analyzer --> bin/gaussian_analyzer-2.7 Link: @bin/gaussian_analyzer --> bin/gaussian_analyzer-2.7 Move: bin/feff_plot_cross_section --> bin/feff_plot_cross_section-2.7 Link: @bin/feff_plot_cross_section --> bin/feff_plot_cross_section-2.7 Move: bin/pydii --> bin/pydii-2.7 Link: @bin/pydii --> bin/pydii-2.7 Move: bin/feff_input_generation --> bin/feff_input_generation-2.7 Link: @bin/feff_input_generation --> bin/feff_input_generation-2.7 Move: bin/pmg --> bin/pmg-2.7 Link: @bin/pmg --> bin/pmg-2.7 ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-pymatgen-2018.6.11_1 file sizes/checksums [856]: ......... done packing files [856]: ......... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 20 JUL 2018 at 20:13:34 UTC Duration: 00:01:13