=> Building science/py-PyQuante@py27 Started : Saturday, 21 JUL 2018 at 22:37:27 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/py-PyQuante XDG_CONFIG_HOME=/construction/science/py-PyQuante HOME=/construction/science/py-PyQuante TMPDIR="/tmp" PATH=/construction/science/py-PyQuante/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-PyQuante XDG_CONFIG_HOME=/construction/science/py-PyQuante HOME=/construction/science/py-PyQuante TMPDIR="/tmp" PATH=/construction/science/py-PyQuante/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-PyQuante/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/PyQuante" EXAMPLESDIR="share/examples/PyQuante" DATADIR="share/PyQuante" WWWDIR="www/PyQuante" ETCDIR="etc/PyQuante" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/PyQuante DOCSDIR=/usr/local/share/doc/PyQuante EXAMPLESDIR=/usr/local/share/examples/PyQuante WWWDIR=/usr/local/www/PyQuante ETCDIR=/usr/local/etc/PyQuante -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-PyQuante-1.6.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> py27-PyQuante-1.6.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-PyQuante-1.6.5 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user => PyQuante-1.6.5.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://downloads.sourceforge.net/project/pyquante/PyQuante-1.6/PyQuante-1.6.5/PyQuante-1.6.5.tar.gz PyQuante-1.6.5.tar.gz 665 kB 0 Bps ===> Fetching all distfiles required by py27-PyQuante-1.6.5 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py27-PyQuante-1.6.5 for building => SHA256 Checksum OK for PyQuante-1.6.5.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py27-PyQuante-1.6.5 for building ===> Extracting for py27-PyQuante-1.6.5 => SHA256 Checksum OK for PyQuante-1.6.5.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-PyQuante-1.6.5 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-PyQuante-1.6.5 depends on package: py27-setuptools>0 - not found ===> Installing existing package /packages/All/py27-setuptools-39.2.0.txz Installing py27-setuptools-39.2.0... `-- Installing python27-2.7.15... | `-- Installing expat-2.2.5... | `-- Extracting expat-2.2.5: .......... done | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Installing libffi-3.2.1_2... | `-- Extracting libffi-3.2.1_2: .......... done | `-- Installing libressl-2.7.4... | `-- Extracting libressl-2.7.4: .......... done | `-- Installing ncurses-6.0.0s20171223_1... | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | `-- Installing readline-7.0.3_1... | `-- Extracting readline-7.0.3_1: .......... done `-- Extracting python27-2.7.15: .......... done Extracting py27-setuptools-39.2.0: .......... done Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> py27-PyQuante-1.6.5 depends on package: py27-setuptools>0 - found ===> Returning to build of py27-PyQuante-1.6.5 ===> py27-PyQuante-1.6.5 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-PyQuante-1.6.5 sh: Syntax error: Bad fd number /usr/local/lib/python2.7/distutils/dist.py:251: UserWarning: 'licence' distribution option is deprecated; use 'license' warnings.warn(msg) running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-PyQuante-1.6.5 sh: Syntax error: Bad fd number /usr/local/lib/python2.7/distutils/dist.py:251: UserWarning: 'licence' distribution option is deprecated; use 'license' warnings.warn(msg) running build running build_py creating build creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/leapfrog.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/CGBF.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/MINDO3_Parameters.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/DFunctionals.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/EN2.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/rys.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/NumWrap.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/CachedIntindex.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/PyQuante2.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/ThomasFermi.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/hartree_fock.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/pyints.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Ints.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/HFGF.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Solvers.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/dft.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/MG2.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/MINDO3.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Defaults.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Molecule.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/rohf.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/MolecularGrid.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Convergence.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/MP.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/GridPoint.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Atom.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/settings.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Element.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/AnalyticDerivatives.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/DMP.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/hgp.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/AtomicGrid.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Bunch.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Lebedev.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/CI.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/TestMolecules.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/fermi_dirac.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Wavefunction.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/qmmd.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/OEP.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Slater.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/LA2.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/PGBF.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Legendre.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Util.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Minimizers.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/optimize.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/DFunctionalsOld.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/NEB.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Constants.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/force.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/logger.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/pressure.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante copying PyQuante/Dynamics.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpvqz.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpvdz.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p631.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/sto6g.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p6311pp_3d_3p.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p6311ss.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpvtz.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpvqz.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/Tools.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpv5z.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/sto3g.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpv5z.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpvtz.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpv6z.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p6311pp_2d_2p.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/lacvp.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/basis.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p321.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p631ppss.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/dzvp.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpvdz.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p631ss.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpv6z.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p6311pp_3df_3pd.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Jaguar.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Matlab.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Data.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Handlers.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/XYZ.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/PyQuanteBackend.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/OpenBabelBackend.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Molf.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Cube.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/FormatHandlers copying PyQuante/IO/FormatHandlers/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/FormatHandlers copying PyQuante/IO/FormatHandlers/XYZ.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/FormatHandlers copying PyQuante/IO/FormatHandlers/CML.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/FormatHandlers copying PyQuante/IO/FormatHandlers/HandlerList.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/FormatHandlers running build_ext building 'PyQuante.cints' extension creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c Src/cints.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/cints.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/cints.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/cints.so building 'PyQuante.chgp' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c Src/chgp.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/chgp.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/chgp.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/chgp.so building 'PyQuante.crys' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c Src/crys.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/crys.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/crys.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/crys.so building 'PyQuante.contracted_gto' extension creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/PyQuante creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/PyQuante/contracted_gto.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/PyQuante/contracted_gto.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/contracted-gto.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/contracted-gto.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/primitive-gto.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/primitive-gto.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/math.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/math.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/swap.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/swap.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/PyQuante/contracted_gto.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/contracted-gto.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/primitive-gto.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/math.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/swap.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/contracted_gto.so building 'PyQuante.primitive_gto' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/PyQuante/primitive_gto.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/PyQuante/primitive_gto.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/primitive-gto.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/primitive-gto.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/math.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/math.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/swap.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/swap.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/PyQuante/primitive_gto.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/primitive-gto.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/math.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/swap.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/primitive_gto.so building 'PyQuante.shell' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/PyQuante/shell.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/PyQuante/shell.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/shell.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/shell.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/contracted-gto.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/contracted-gto.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/primitive-gto.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/primitive-gto.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/math.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/math.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/swap.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/swap.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/PyQuante/shell.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/shell.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/contracted-gto.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/primitive-gto.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/math.o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/lib/utils/swap.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/shell.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-PyQuante-1.6.5 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.14.3,1.txz Installing py27-numpy-1.14.3,1... `-- Installing gcc5-5.5.0_4... | `-- Installing binutils-2.30_3,1... | `-- Extracting binutils-2.30_3,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0_1... | | `-- Installing mpfr-4.0.1... | | `-- Extracting mpfr-4.0.1: .......... done | `-- Extracting mpc-1.1.0_1: ......... done `-- Extracting gcc5-5.5.0_4: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing suitesparse-5.2.0... | `-- Installing lapack-3.5.0_4... | | `-- Installing blas-3.5.0_4... | | `-- Extracting blas-3.5.0_4: ....... done | `-- Extracting lapack-3.5.0_4: .......... done | `-- Installing metis-5.1.0_4... | `-- Extracting metis-5.1.0_4: .......... done `-- Extracting suitesparse-5.2.0: .......... done Extracting py27-numpy-1.14.3,1: .......... done Message from gcc5-5.5.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from metis-5.1.0_4: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-PyQuante-1.6.5 depends on package: py27-numpy>0 - found ===> Returning to build of py27-PyQuante-1.6.5 ===> py27-PyQuante-1.6.5 depends on package: py27-setuptools>0 - found ===> py27-PyQuante-1.6.5 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-PyQuante-1.6.5 ===> Generating temporary packing list sh: Syntax error: Bad fd number /usr/local/lib/python2.7/distutils/dist.py:251: UserWarning: 'licence' distribution option is deprecated; use 'license' warnings.warn(msg) running install running build running build_py running build_ext running install_lib creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7 creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/contracted_gto.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/crys.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/chgp.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/shell.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/cints.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/primitive_gto.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Dynamics.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/DFunctionals.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Util.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/MINDO3.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Legendre.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Convergence.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/pyints.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/optimize.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/EN2.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Constants.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/ThomasFermi.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Solvers.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/TestMolecules.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Bunch.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Ints.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/rys.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/rohf.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/AnalyticDerivatives.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/DMP.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/PyQuante2.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/MG2.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/DFunctionalsOld.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/CGBF.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Lebedev.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Atom.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/qmmd.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/fermi_dirac.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/CachedIntindex.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Element.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/MINDO3_Parameters.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/logger.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/hartree_fock.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/OEP.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/NEB.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/__init__.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/CI.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/leapfrog.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/PGBF.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Wavefunction.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/MP.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/Data.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/XYZ.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/Matlab.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/Molf.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/Cube.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/__init__.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/PyQuanteBackend.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/FormatHandlers/CML.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/FormatHandlers/XYZ.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/FormatHandlers/HandlerList.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/FormatHandlers/__init__.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/Jaguar.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/OpenBabelBackend.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/IO/Handlers.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/pressure.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Slater.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/settings.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/GridPoint.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/MolecularGrid.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/HFGF.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/NumWrap.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Minimizers.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/hgp.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/AtomicGrid.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/dft.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/force.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/ccpvtz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/p631ss.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/augccpvdz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/augccpvtz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/p6311pp_3d_3p.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/ccpv5z.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/__init__.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/ccpv6z.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/lacvp.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/augccpvqz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/basis.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/p631.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/sto6g.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/p6311ss.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/p6311pp_2d_2p.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/p631ppss.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/p6311pp_3df_3pd.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/ccpvqz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/augccpv5z.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/p321.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/ccpvdz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/dzvp.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/sto3g.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/Tools.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Basis/augccpv6z.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Molecule.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/LA2.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/PyQuante/Defaults.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Dynamics.py to Dynamics.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/DFunctionals.py to DFunctionals.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Util.py to Util.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MINDO3.py to MINDO3.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Legendre.py to Legendre.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Convergence.py to Convergence.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/pyints.py to pyints.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/optimize.py to optimize.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/EN2.py to EN2.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Constants.py to Constants.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/ThomasFermi.py to ThomasFermi.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Solvers.py to Solvers.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/TestMolecules.py to TestMolecules.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Bunch.py to Bunch.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Ints.py to Ints.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/rys.py to rys.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/rohf.py to rohf.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/AnalyticDerivatives.py to AnalyticDerivatives.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/DMP.py to DMP.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/PyQuante2.py to PyQuante2.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MG2.py to MG2.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/DFunctionalsOld.py to DFunctionalsOld.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/CGBF.py to CGBF.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Lebedev.py to Lebedev.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Atom.py to Atom.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/qmmd.py to qmmd.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/fermi_dirac.py to fermi_dirac.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/CachedIntindex.py to CachedIntindex.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Element.py to Element.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MINDO3_Parameters.py to MINDO3_Parameters.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/logger.py to logger.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/hartree_fock.py to hartree_fock.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/OEP.py to OEP.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/NEB.py to NEB.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/__init__.py to __init__.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/CI.py to CI.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/leapfrog.py to leapfrog.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/PGBF.py to PGBF.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Wavefunction.py to Wavefunction.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MP.py to MP.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Data.py to Data.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/XYZ.py to XYZ.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Matlab.py to Matlab.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Molf.py to Molf.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Cube.py to Cube.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/__init__.py to __init__.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/PyQuanteBackend.py to PyQuanteBackend.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers/CML.py to CML.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers/XYZ.py to XYZ.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers/HandlerList.py to HandlerList.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers/__init__.py to __init__.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Jaguar.py to Jaguar.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/OpenBabelBackend.py to OpenBabelBackend.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Handlers.py to Handlers.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/pressure.py to pressure.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Slater.py to Slater.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/settings.py to settings.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/GridPoint.py to GridPoint.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MolecularGrid.py to MolecularGrid.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/HFGF.py to HFGF.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/NumWrap.py to NumWrap.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Minimizers.py to Minimizers.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/hgp.py to hgp.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/AtomicGrid.py to AtomicGrid.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/dft.py to dft.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/force.py to force.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpvtz.py to ccpvtz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p631ss.py to p631ss.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpvdz.py to augccpvdz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpvtz.py to augccpvtz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p6311pp_3d_3p.py to p6311pp_3d_3p.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpv5z.py to ccpv5z.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/__init__.py to __init__.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpv6z.py to ccpv6z.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/lacvp.py to lacvp.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpvqz.py to augccpvqz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/basis.py to basis.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p631.py to p631.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/sto6g.py to sto6g.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p6311ss.py to p6311ss.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p6311pp_2d_2p.py to p6311pp_2d_2p.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p631ppss.py to p631ppss.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p6311pp_3df_3pd.py to p6311pp_3df_3pd.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpvqz.py to ccpvqz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpv5z.py to augccpv5z.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p321.py to p321.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpvdz.py to ccpvdz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/dzvp.py to dzvp.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/sto3g.py to sto3g.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/Tools.py to Tools.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpv6z.py to augccpv6z.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Molecule.py to Molecule.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/LA2.py to LA2.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Defaults.py to Defaults.pyc writing byte-compilation script '/tmp/tmp9jqwaU.py' /usr/local/bin/python2.7 -O /tmp/tmp9jqwaU.py removing /tmp/tmp9jqwaU.py running install_egg_info running egg_info creating PyQuante.egg-info writing PyQuante.egg-info/PKG-INFO writing top-level names to PyQuante.egg-info/top_level.txt writing dependency_links to PyQuante.egg-info/dependency_links.txt writing manifest file 'PyQuante.egg-info/SOURCES.txt' reading manifest file 'PyQuante.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'Doc/*.html' writing manifest file 'PyQuante.egg-info/SOURCES.txt' Copying PyQuante.egg-info to /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante-1.6.5-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-PyQuante/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-PyQuante-1.6.5 file sizes/checksums [295]: ... done packing files [295]: ... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 21 JUL 2018 at 22:38:34 UTC Duration: 00:01:06