=> Building science/py-MDAnalysisTests@py36 Started : Saturday, 21 JUL 2018 at 22:33:17 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/science/py-MDAnalysisTests XDG_CONFIG_HOME=/construction/science/py-MDAnalysisTests HOME=/construction/science/py-MDAnalysisTests TMPDIR="/tmp" PATH=/construction/science/py-MDAnalysisTests/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-MDAnalysisTests XDG_CONFIG_HOME=/construction/science/py-MDAnalysisTests HOME=/construction/science/py-MDAnalysisTests TMPDIR="/tmp" PATH=/construction/science/py-MDAnalysisTests/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-MDAnalysisTests/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/MDAnalysisTests" EXAMPLESDIR="share/examples/MDAnalysisTests" DATADIR="share/MDAnalysisTests" WWWDIR="www/MDAnalysisTests" ETCDIR="etc/MDAnalysisTests" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/MDAnalysisTests DOCSDIR=/usr/local/share/doc/MDAnalysisTests EXAMPLESDIR=/usr/local/share/examples/MDAnalysisTests WWWDIR=/usr/local/www/MDAnalysisTests ETCDIR=/usr/local/etc/MDAnalysisTests -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-MDAnalysisTests-0.18.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> py36-MDAnalysisTests-0.18.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-MDAnalysisTests-0.18.0 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by py36-MDAnalysisTests-0.18.0 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by py36-MDAnalysisTests-0.18.0 for building => SHA256 Checksum OK for MDAnalysisTests-0.18.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by py36-MDAnalysisTests-0.18.0 for building ===> Extracting for py36-MDAnalysisTests-0.18.0 => SHA256 Checksum OK for MDAnalysisTests-0.18.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-MDAnalysisTests-0.18.0 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-setuptools>0 - not found ===> Installing existing package /packages/All/py36-setuptools-39.2.0.txz Installing py36-setuptools-39.2.0... `-- Installing python36-3.6.5... | `-- Installing expat-2.2.5... | `-- Extracting expat-2.2.5: .......... done | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Installing libffi-3.2.1_2... | `-- Extracting libffi-3.2.1_2: .......... done | `-- Installing libressl-2.7.4... | `-- Extracting libressl-2.7.4: .......... done | `-- Installing ncurses-6.0.0s20171223_1... | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | `-- Installing readline-7.0.3_1... | `-- Extracting readline-7.0.3_1: .......... done `-- Extracting python36-3.6.5: .......... done Extracting py36-setuptools-39.2.0: .......... done Message from python36-3.6.5: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-39.2.0: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-setuptools>0 - found ===> Returning to build of py36-MDAnalysisTests-0.18.0 ===> py36-MDAnalysisTests-0.18.0 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-MDAnalysisTests-0.18.0 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-MDAnalysisTests-0.18.0 running build running build_py creating build creating build/lib creating build/lib/MDAnalysisTests copying MDAnalysisTests/authors.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/datafiles.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/test_api.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/dummy.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/util.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/__init__.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/tempdir.py -> build/lib/MDAnalysisTests creating build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/__init__.py -> build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/test_streamlines.py -> build/lib/MDAnalysisTests/visualization creating build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/test_import.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/__init__.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/fork_called.py -> build/lib/MDAnalysisTests/import creating build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pqr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_reader_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_writer_registration.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_null.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/base.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_crd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mmtf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dcd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_amber_inpcrd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_lammps.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_memory.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_chainreader.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/__init__.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gro.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/reference.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_txyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_timestep_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_netcdf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mol2.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdbqt.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xdr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_copying.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdb.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gsd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trj.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dlpoly.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gms.py -> build/lib/MDAnalysisTests/coordinates creating build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residue.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segment.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_index_dtype.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_groups.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyattrs.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topology.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segmentgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/__init__.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomselections.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residuegroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_updating_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_group_traj_access.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_universe.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyobjects.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_requires.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_copying.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_fragments.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atom.py -> build/lib/MDAnalysisTests/core creating build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_neighborsearch.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/__init__.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_util.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_pkdtree.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_distances.py -> build/lib/MDAnalysisTests/lib creating build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pqr.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_tprparser.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_crd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_minimal.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mmtf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_str_types.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_psf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/__init__.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gro.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_txyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_lammpsdata.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_top.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mol2.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_guessers.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdbqt.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xpdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gsd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dlpoly.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_hoomdxml.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gms.py -> build/lib/MDAnalysisTests/topology creating build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_psa.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_density.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_base.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_contacts.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_encore.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_gnm.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rms.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_waterdynamics.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_nuclinfo.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/__init__.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_lineardensity.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_leaflet.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_wbridge.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hole.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_helanal.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_persistencelength.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_pca.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_align.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_distances.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_diffusionmap.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hbonds.py -> build/lib/MDAnalysisTests/analysis creating build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/base.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/__init__.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/test_xvg.py -> build/lib/MDAnalysisTests/auxiliary creating build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libmdaxdr.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libdcd.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/__init__.py -> build/lib/MDAnalysisTests/formats creating build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_imports.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_streamio.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_meta.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_altloc.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_log.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_qcprot.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_transformations.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_units.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_nuclinfo.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_datafiles.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/__init__.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_modelling.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_persistence.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_deprecated.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_failure.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_distances.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_selections.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_duecredits.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_authors.py -> build/lib/MDAnalysisTests/utils creating build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trz_psf.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_NAMD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop_BAD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nosegid.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims2.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/unordered_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/CONECT2TER.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/4E43.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xl_serial.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1k5i.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/A6PA6_alpha.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SINGLECONECT.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5digitResid.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/align.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nucl_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_single.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/conect_parsing.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/incomplete.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1hvr.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_querypdb.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pdb -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> build/lib/MDAnalysisTests/data/tprs creating build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/cobrotoxin.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty_atom.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/plength.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/make_whole.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/dppc_vesicle_hg.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_nonames.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap_0base.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_widebox.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sample_velocity_file.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/missing_atomname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/grovels.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xyz_random_walk.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.crd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/mini.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/five.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/chitosan.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.trj -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/test.inpcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/1A2C.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/C12x64.xml.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bigbox.gro.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1osm.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDnewres.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5KIH.mmtf.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDrepeat.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/testENT.ent -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.fasta -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.dms -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/merge creating build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/ligand.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/water.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/protein.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/trzfile.trz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/zinc_856218.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecules.mol2 -> build/lib/MDAnalysisTests/data/mol2 creating build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> build/lib/MDAnalysisTests/data/contacts creating build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/aaqaa.gro -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/nma.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/ace.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> build/lib/MDAnalysisTests/data/capping creating build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/mini.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/deletedatoms.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.trz -> build/lib/MDAnalysisTests/data/lammps creating build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/symopt.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/surf2wat.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/c1opt.gms.gz -> build/lib/MDAnalysisTests/data/gms creating build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_minimal -> build/lib/MDAnalysisTests/data/dlpoly creating build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.trr -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.txyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xtc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/create_data.py -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/README.md -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_topology.pdb -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.dcd -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/test_lowf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bad_num_col.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test_highf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/173D.mmtf -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_bound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/example.gsd -> build/lib/MDAnalysisTests/data -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.14.3,1.txz Installing py36-numpy-1.14.3,1... `-- Installing gcc5-5.5.0_4... | `-- Installing binutils-2.30_3,1... | `-- Extracting binutils-2.30_3,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0_1... | | `-- Installing mpfr-4.0.1... | | `-- Extracting mpfr-4.0.1: .......... done | `-- Extracting mpc-1.1.0_1: ......... done `-- Extracting gcc5-5.5.0_4: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing suitesparse-5.2.0... | `-- Installing lapack-3.5.0_4... | | `-- Installing blas-3.5.0_4... | | `-- Extracting blas-3.5.0_4: ....... done | `-- Extracting lapack-3.5.0_4: .......... done | `-- Installing metis-5.1.0_4... | `-- Extracting metis-5.1.0_4: .......... done `-- Extracting suitesparse-5.2.0: .......... done Extracting py36-numpy-1.14.3,1: .......... done Message from gcc5-5.5.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from metis-5.1.0_4: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-numpy>0 - found ===> Returning to build of py36-MDAnalysisTests-0.18.0 ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-MDAnalysis>0 - not found ===> Installing existing package /packages/All/py36-MDAnalysis-0.18.0.txz Installing py36-MDAnalysis-0.18.0... `-- Installing py36-GridDataFormats-0.4.0... | `-- Installing py36-six-1.11.0... | `-- Extracting py36-six-1.11.0: .......... done `-- Extracting py36-GridDataFormats-0.4.0: .......... done `-- Installing py36-biopython-1.71_1... | `-- Installing py36-reportlab-3.2.0... | | `-- Installing adobe-cmaps-20051217_3... | | `-- Installing fontconfig-2.12.6,1... | | | `-- Installing freetype2-2.9.1... | | | `-- Extracting freetype2-2.9.1: .......... done | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing mkfontdir-1.0.7... | | | `-- Installing mkfontscale-1.1.3... | | | `-- Installing libfontenc-1.1.3_1... | | | | `-- Installing xproto-7.0.31... | | | | `-- Extracting xproto-7.0.31: .......... done | | | `-- Extracting libfontenc-1.1.3_1: ......... done | | | `-- Extracting mkfontscale-1.1.3: ..... done | | `-- Extracting mkfontdir-1.0.7: ..... done | | `-- Extracting adobe-cmaps-20051217_3: .......... done | | `-- Installing py36-pillow-5.0.0... | | `-- Installing jpeg-turbo-1.5.3... | | `-- Extracting jpeg-turbo-1.5.3: .......... done | | `-- Installing openjpeg-2.3.0... | | | `-- Installing lcms2-2.9... | | | `-- Installing tiff-4.0.9_1... | | | | `-- Installing jbigkit-2.1_1... | | | | `-- Extracting jbigkit-2.1_1: .......... done | | | `-- Extracting tiff-4.0.9_1: .......... done | | | `-- Extracting lcms2-2.9: .......... done | | | `-- Installing png-1.6.34... | | | `-- Extracting png-1.6.34: .......... done | | `-- Extracting openjpeg-2.3.0: .......... done | | `-- Installing py36-tkinter-3.6.5_6... | | | `-- Installing tcl86-8.6.8... | | | `-- Extracting tcl86-8.6.8: .......... done | | | `-- Installing tk86-8.6.8_2... | | | `-- Installing libX11-1.6.5,1... | | | | `-- Installing kbproto-1.0.7... | | | | `-- Extracting kbproto-1.0.7: .......... done | | | | `-- Installing libXau-1.0.8_3... | | | | `-- Extracting libXau-1.0.8_3: .......... done | | | | `-- Installing libXdmcp-1.1.2... | | | | `-- Extracting libXdmcp-1.1.2: ......... done | | | | `-- Installing libxcb-1.13... | | | | `-- Installing libpthread-stubs-0.4... | | | | `-- Extracting libpthread-stubs-0.4: .... done | | | | `-- Installing libxml2-2.9.7... | | | | `-- Extracting libxml2-2.9.7: .......... done | | | | `-- Extracting libxcb-1.13: .......... done | | | `-- Extracting libX11-1.6.5,1: .......... done | | | `-- Installing libXScrnSaver-1.2.2_3... | | | | `-- Installing libXext-1.3.3_1,1... | | | | `-- Installing xextproto-7.3.0... | | | | `-- Extracting xextproto-7.3.0: .......... done | | | | `-- Extracting libXext-1.3.3_1,1: .......... done | | | | `-- Installing scrnsaverproto-1.2.2... | | | | `-- Extracting scrnsaverproto-1.2.2: ... done | | | `-- Extracting libXScrnSaver-1.2.2_3: .......... done | | | `-- Installing libXft-2.3.2_1... | | | | `-- Installing libXrender-0.9.10... | | | | `-- Installing renderproto-0.11.1... | | | | `-- Extracting renderproto-0.11.1: .... done | | | | `-- Extracting libXrender-0.9.10: .......... done | | | `-- Extracting libXft-2.3.2_1: .......... done | | | `-- Extracting tk86-8.6.8_2: .......... done | | `-- Extracting py36-tkinter-3.6.5_6: ........ done | | `-- Installing webp-1.0.0... | | | `-- Installing giflib-5.1.4... | | | `-- Extracting giflib-5.1.4: .......... done | | `-- Extracting webp-1.0.0: .......... done | | `-- Extracting py36-pillow-5.0.0: .......... done | `-- Extracting py36-reportlab-3.2.0: .......... done `-- Extracting py36-biopython-1.71_1: .......... done `-- Installing py36-duecredit-0.6.4... | `-- Installing py36-citeproc-py-0.4.0... | | `-- Installing py36-lxml-4.1.1... | | `-- Installing libxslt-1.1.32... | | | `-- Installing libgcrypt-1.8.3... | | | `-- Installing libgpg-error-1.31... | | | `-- Extracting libgpg-error-1.31: .......... done | | | `-- Extracting libgcrypt-1.8.3: .......... done | | `-- Extracting libxslt-1.1.32: .......... done | | `-- Extracting py36-lxml-4.1.1: .......... done | `-- Extracting py36-citeproc-py-0.4.0: ......... done | `-- Installing py36-requests-2.18.4... | | `-- Installing py36-certifi-2018.4.16... | | `-- Extracting py36-certifi-2018.4.16: .......... done | | `-- Installing py36-chardet-3.0.4... | | `-- Extracting 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.......... done | | `-- Extracting libXaw-1.0.13,2: .......... done | | `-- Installing libgd-2.2.4_1,1... | | `-- Extracting libgd-2.2.4_1,1: .......... done | | `-- Installing libltdl-2.4.6... | | `-- Extracting libltdl-2.4.6: .......... done | | `-- Installing pango-1.42.0... | | | `-- Installing encodings-1.0.4_4,1... | | | `-- Installing font-util-1.3.1... | | | `-- Extracting font-util-1.3.1: .......... done | | | `-- Extracting encodings-1.0.4_4,1: .......... done | | | `-- Installing fribidi-0.19.7... | | | `-- Extracting fribidi-0.19.7: .......... done | | | `-- Installing harfbuzz-1.8.2... | | | `-- Installing graphite2-1.3.11... | | | `-- Extracting graphite2-1.3.11: .......... done | | | `-- Extracting harfbuzz-1.8.2: .......... done | | | `-- Installing xorg-fonts-truetype-7.7_1... | | | `-- Installing dejavu-2.37... | | | `-- Extracting dejavu-2.37: .......... done | | | `-- Installing font-bh-ttf-1.0.3_3... | | | `-- Extracting font-bh-ttf-1.0.3_3: .......... done | | | `-- Installing font-misc-ethiopic-1.0.3_3... | | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done | | | `-- Installing font-misc-meltho-1.0.3_3... | | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done | | `-- Extracting pango-1.42.0: .......... done | | `-- Extracting graphviz-2.40.1_5: .......... done | `-- Extracting py36-pygraphviz-1.3.1: .......... done | `-- Installing py36-scikit-sparse-0.4.3_1... | | `-- Installing py36-scipy-1.1.0... | | `-- Extracting py36-scipy-1.1.0: .......... done | `-- Extracting py36-scikit-sparse-0.4.3_1: .......... done | `-- Installing py36-yaml-3.12... | `-- Extracting py36-yaml-3.12: .......... done `-- Extracting py36-networkx-1.10_4: .......... done Extracting py36-MDAnalysis-0.18.0: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from py36-urllib3-1.22,1: Be careful, support of IPv6 is broken with PySocks 1.5.7. Message from perl5-5.26.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-MDAnalysis>0 - found ===> Returning to build of py36-MDAnalysisTests-0.18.0 ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-pytest>=3.1.2 - not found ===> Installing existing package /packages/All/py36-pytest-3.4.2.txz Installing py36-pytest-3.4.2... `-- Installing py36-attrs-18.1.0... `-- Extracting py36-attrs-18.1.0: .......... done `-- Installing py36-pluggy-0.6.0... `-- Extracting py36-pluggy-0.6.0: .......... done `-- Installing py36-py-1.5.3... `-- Extracting py36-py-1.5.3: .......... done Extracting py36-pytest-3.4.2: .......... done ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-pytest>=3.1.2 - found ===> Returning to build of py36-MDAnalysisTests-0.18.0 ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-hypothesis>0 - not found ===> Installing existing package /packages/All/py36-hypothesis-3.56.10.txz Installing py36-hypothesis-3.56.10... `-- Installing py36-coverage-4.5.1_1... `-- Extracting py36-coverage-4.5.1_1: .......... done `-- Installing py36-sqlite3-3.6.5_7... | `-- Installing sqlite3-3.24.0_1... | `-- Extracting sqlite3-3.24.0_1: .......... done `-- Extracting py36-sqlite3-3.6.5_7: ........ done Extracting py36-hypothesis-3.56.10: .......... done ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-hypothesis>0 - found ===> Returning to build of py36-MDAnalysisTests-0.18.0 ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-psutil>=4.0.2 - not found ===> Installing existing package /packages/All/py36-psutil-5.4.6.txz Installing py36-psutil-5.4.6... Extracting py36-psutil-5.4.6: .......... done ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-psutil>=4.0.2 - found ===> Returning to build of py36-MDAnalysisTests-0.18.0 ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-mock>=2.0.0 - not found ===> Installing existing package /packages/All/py36-mock-2.0.0.txz Installing py36-mock-2.0.0... `-- Installing py36-pbr-3.1.1... | `-- Installing py36-pip-9.0.3... | `-- Extracting py36-pip-9.0.3: .......... done `-- Extracting py36-pbr-3.1.1: .......... done Extracting py36-mock-2.0.0: .......... done Message from py36-pip-9.0.3: ============================== !!!! WARNING !!!! ========================== pip MUST ONLY be used: * With the --user flag, OR * To install or manage Python packages in virtual environments Failure to follow this warning can and will result in an inconsistent system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and cause errors. Avoid using pip as root unless you know what you're doing. ============================== !!!! WARNING !!!! ========================== ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-mock>=2.0.0 - found ===> Returning to build of py36-MDAnalysisTests-0.18.0 ===> py36-MDAnalysisTests-0.18.0 depends on package: py36-setuptools>0 - found ===> py36-MDAnalysisTests-0.18.0 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-MDAnalysisTests-0.18.0 ===> Generating temporary packing list running install running build running build_py copying MDAnalysisTests/authors.py -> build/lib/MDAnalysisTests running install_lib creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6 creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_bound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/cobrotoxin.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1k5i.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/zinc_856218.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecules.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/chainIDrepeat.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/4E43.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/deletedatoms.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/mini.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/C12x64.xml.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_nonames.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1A2C.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/A6PA6_alpha.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tip125_tric_C36.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_topology.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.txyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/create_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sample_velocity_file.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/incomplete.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_querypdb.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/conect_parsing.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/ligand.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/water.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/protein.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/example.gsd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap_0base.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1osm.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xyz_random_walk.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.trj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/test.inpcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.nc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/chitosan.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/bad_num_col.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDnewres.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/surf2wat.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/symopt.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/c1opt.gms.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/namd_cgenff.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/grovels.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/173D.mmtf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/ace.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/aaqaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/nma.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/bigbox.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trz_psf.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_lowf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.crd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5KIH.mmtf.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/plength.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/dppc_vesicle_hg.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop_BAD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/make_whole.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.fasta -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/unordered_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.dms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/mini.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nosegid.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SINGLECONECT.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_highf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims2.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_widebox.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/five.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_NAMD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5digitResid.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1hvr.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xl_serial.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_single.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty_atom.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/testENT.ent -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/align.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trzfile.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nucl_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/missing_atomname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/CONECT2TER.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/dummy.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_deprecated.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_failure.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_selections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_transformations.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_units.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_altloc.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_authors.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_imports.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_duecredits.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_persistence.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_meta.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_log.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_streamio.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_qcprot.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_modelling.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/authors.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_neighborsearch.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_pkdtree.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_psa.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_persistencelength.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_pca.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_encore.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hole.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_align.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_diffusionmap.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_lineardensity.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_waterdynamics.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hbonds.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_contacts.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_density.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_gnm.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_wbridge.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_leaflet.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_helanal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/test_streamlines.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_universe.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_groups.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyobjects.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_index_dtype.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_group_traj_access.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyattrs.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_fragments.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residue.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topology.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segmentgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residuegroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atom.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_requires.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_updating_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomselections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_tprparser.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_str_types.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_psf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xpdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_minimal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_hoomdxml.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_guessers.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_lammpsdata.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_top.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/test_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_amber_inpcrd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_reader_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_timestep_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/reference.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trj.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_writer_registration.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_netcdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_memory.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_chainreader.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_lammps.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_null.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/test_xvg.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/test_import.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/fork_called.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libdcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libmdaxdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/tempdir.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates/create_data.py to create_data.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/dummy.py to dummy.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_deprecated.py to test_deprecated.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_failure.py to test_failure.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_datafiles.py to test_datafiles.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_nuclinfo.py to test_nuclinfo.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_selections.py to test_selections.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_transformations.py to test_transformations.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_distances.py to test_distances.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_units.py to test_units.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_altloc.py to test_altloc.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_authors.py to test_authors.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_imports.py to test_imports.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_duecredits.py to test_duecredits.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_persistence.py to test_persistence.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_meta.py to test_meta.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_log.py to test_log.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_streamio.py to test_streamio.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_qcprot.py to test_qcprot.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_modelling.py to test_modelling.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/authors.py to authors.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_util.py to test_util.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_neighborsearch.py to test_neighborsearch.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_distances.py to test_distances.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_pkdtree.py to test_pkdtree.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_psa.py to test_psa.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_persistencelength.py to test_persistencelength.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_pca.py to test_pca.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_encore.py to test_encore.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_rms.py to test_rms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_hole.py to test_hole.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_align.py to test_align.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_rdf.py to test_rdf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_nuclinfo.py to test_nuclinfo.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_diffusionmap.py to test_diffusionmap.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_lineardensity.py to test_lineardensity.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_waterdynamics.py to test_waterdynamics.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_base.py to test_base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_hbonds.py to test_hbonds.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py to test_hydrogenbondautocorrel.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_contacts.py to test_contacts.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_density.py to test_density.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_gnm.py to test_gnm.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_wbridge.py to test_wbridge.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_distances.py to test_distances.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_leaflet.py to test_leaflet.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_helanal.py to test_helanal.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization/test_streamlines.py to test_streamlines.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_universe.py to test_universe.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_groups.py to test_groups.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_topologyobjects.py to test_topologyobjects.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_index_dtype.py to test_index_dtype.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_group_traj_access.py to test_group_traj_access.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_topologyattrs.py to test_topologyattrs.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_fragments.py to test_fragments.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_residue.py to test_residue.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_topology.py to test_topology.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_segmentgroup.py to test_segmentgroup.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_segment.py to test_segment.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_residuegroup.py to test_residuegroup.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_atom.py to test_atom.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_requires.py to test_requires.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_atomgroup.py to test_atomgroup.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_copying.py to test_copying.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_updating_atomgroup.py to test_updating_atomgroup.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_atomselections.py to test_atomselections.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_tprparser.py to test_tprparser.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_crd.py to test_crd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_gro.py to test_gro.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_topology_str_types.py to test_topology_str_types.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_psf.py to test_psf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_mmtf.py to test_mmtf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_xpdb.py to test_xpdb.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_pdbqt.py to test_pdbqt.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_minimal.py to test_minimal.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_pqr.py to test_pqr.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_dlpoly.py to test_dlpoly.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_dms.py to test_dms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/base.py to base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_gsd.py to test_gsd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_xyz.py to test_xyz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_txyz.py to test_txyz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_gms.py to test_gms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_pdb.py to test_pdb.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_hoomdxml.py to test_hoomdxml.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_guessers.py to test_guessers.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_mol2.py to test_mol2.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_topology_base.py to test_topology_base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_lammpsdata.py to test_lammpsdata.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_top.py to test_top.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/test_api.py to test_api.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/datafiles.py to datafiles.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_dlpoly.py to test_dlpoly.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/base.py to base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_trz.py to test_trz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_amber_inpcrd.py to test_amber_inpcrd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_dcd.py to test_dcd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_pdb.py to test_pdb.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_reader_api.py to test_reader_api.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_timestep_api.py to test_timestep_api.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/reference.py to reference.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_trj.py to test_trj.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_pdbqt.py to test_pdbqt.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_gsd.py to test_gsd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_gms.py to test_gms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_gro.py to test_gro.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_dms.py to test_dms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_writer_registration.py to test_writer_registration.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_mmtf.py to test_mmtf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_crd.py to test_crd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_xyz.py to test_xyz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_mol2.py to test_mol2.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_txyz.py to test_txyz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_pqr.py to test_pqr.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_netcdf.py to test_netcdf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_memory.py to test_memory.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_chainreader.py to test_chainreader.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_xdr.py to test_xdr.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_lammps.py to test_lammps.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_copying.py to test_copying.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_null.py to test_null.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary/test_xvg.py to test_xvg.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary/base.py to base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import/test_import.py to test_import.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import/fork_called.py to fork_called.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats/test_libdcd.py to test_libdcd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats/test_libmdaxdr.py to test_libmdaxdr.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/tempdir.py to tempdir.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/util.py to util.cpython-36.pyc writing byte-compilation script '/tmp/tmpicdccplz.py' /usr/local/bin/python3.6 /tmp/tmpicdccplz.py removing /tmp/tmpicdccplz.py running install_egg_info running egg_info writing MDAnalysisTests.egg-info/PKG-INFO writing dependency_links to MDAnalysisTests.egg-info/dependency_links.txt writing requirements to MDAnalysisTests.egg-info/requires.txt writing top-level names to MDAnalysisTests.egg-info/top_level.txt reading manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'TODO' warning: no files found matching 'SUMMARY.txt' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pkl' found anywhere in distribution writing manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' Copying MDAnalysisTests.egg-info to /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests-0.18.0-py3.6.egg-info running install_scripts writing list of installed files to '/construction/science/py-MDAnalysisTests/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-MDAnalysisTests-0.18.0 file sizes/checksums [625]: ....... done packing files [625]: ....... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 21 JUL 2018 at 22:37:42 UTC Duration: 00:04:24