=> Building science/py-MDAnalysisTests@py27 Started : Saturday, 21 JUL 2018 at 22:32:56 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/py-MDAnalysisTests XDG_CONFIG_HOME=/construction/science/py-MDAnalysisTests HOME=/construction/science/py-MDAnalysisTests TMPDIR="/tmp" PATH=/construction/science/py-MDAnalysisTests/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-MDAnalysisTests XDG_CONFIG_HOME=/construction/science/py-MDAnalysisTests HOME=/construction/science/py-MDAnalysisTests TMPDIR="/tmp" PATH=/construction/science/py-MDAnalysisTests/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-MDAnalysisTests/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/MDAnalysisTests" EXAMPLESDIR="share/examples/MDAnalysisTests" DATADIR="share/MDAnalysisTests" WWWDIR="www/MDAnalysisTests" ETCDIR="etc/MDAnalysisTests" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/MDAnalysisTests DOCSDIR=/usr/local/share/doc/MDAnalysisTests EXAMPLESDIR=/usr/local/share/examples/MDAnalysisTests WWWDIR=/usr/local/www/MDAnalysisTests ETCDIR=/usr/local/etc/MDAnalysisTests -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.18.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> py27-MDAnalysisTests-0.18.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-MDAnalysisTests-0.18.0 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by py27-MDAnalysisTests-0.18.0 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by py27-MDAnalysisTests-0.18.0 for building => SHA256 Checksum OK for MDAnalysisTests-0.18.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by py27-MDAnalysisTests-0.18.0 for building ===> Extracting for py27-MDAnalysisTests-0.18.0 => SHA256 Checksum OK for MDAnalysisTests-0.18.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-MDAnalysisTests-0.18.0 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-setuptools>0 - not found ===> Installing existing package /packages/All/py27-setuptools-39.2.0.txz Installing py27-setuptools-39.2.0... `-- Installing python27-2.7.15... | `-- Installing expat-2.2.5... | `-- Extracting expat-2.2.5: .......... done | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Installing libffi-3.2.1_2... | `-- Extracting libffi-3.2.1_2: .......... done | `-- Installing libressl-2.7.4... | `-- Extracting libressl-2.7.4: .......... done | `-- Installing ncurses-6.0.0s20171223_1... | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | `-- Installing readline-7.0.3_1... | `-- Extracting readline-7.0.3_1: .......... done `-- Extracting python27-2.7.15: .......... done Extracting py27-setuptools-39.2.0: .......... done Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-setuptools>0 - found ===> Returning to build of py27-MDAnalysisTests-0.18.0 ===> py27-MDAnalysisTests-0.18.0 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-MDAnalysisTests-0.18.0 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-MDAnalysisTests-0.18.0 running build running build_py creating build creating build/lib creating build/lib/MDAnalysisTests copying MDAnalysisTests/authors.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/util.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/dummy.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/__init__.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/test_api.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/tempdir.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/datafiles.py -> build/lib/MDAnalysisTests creating build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/__init__.py -> build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/test_streamlines.py -> build/lib/MDAnalysisTests/visualization creating build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/__init__.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/test_xvg.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/base.py -> build/lib/MDAnalysisTests/auxiliary creating build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libdcd.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libmdaxdr.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/__init__.py -> build/lib/MDAnalysisTests/formats creating build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mmtf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gsd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dlpoly.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xpdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pqr.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_txyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_hoomdxml.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdbqt.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_guessers.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gro.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mol2.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_tprparser.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_minimal.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_top.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/__init__.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_str_types.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_crd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_lammpsdata.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_psf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dms.py -> build/lib/MDAnalysisTests/topology creating build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atom.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyobjects.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_groups.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyattrs.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_requires.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_copying.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_universe.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residue.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residuegroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomselections.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_fragments.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/__init__.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_index_dtype.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segment.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topology.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_updating_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_group_traj_access.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segmentgroup.py -> build/lib/MDAnalysisTests/core creating build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_amber_inpcrd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gsd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdb.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dcd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_writer_registration.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dlpoly.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_chainreader.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trj.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gro.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mmtf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_netcdf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_crd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xdr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_memory.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mol2.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/__init__.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_null.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pqr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_reader_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_txyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_timestep_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/base.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdbqt.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/reference.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_lammps.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_copying.py -> build/lib/MDAnalysisTests/coordinates creating build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_nuclinfo.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/__init__.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_deprecated.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_selections.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_imports.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_log.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_meta.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_modelling.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_streamio.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_datafiles.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_duecredits.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_qcprot.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_transformations.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_persistence.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_altloc.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_authors.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_distances.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_units.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_failure.py -> build/lib/MDAnalysisTests/utils creating build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_wbridge.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_contacts.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rms.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_encore.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_distances.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_psa.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_align.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/__init__.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_leaflet.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_diffusionmap.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hole.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_pca.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_lineardensity.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hbonds.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_persistencelength.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_density.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_base.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_helanal.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_gnm.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_nuclinfo.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_waterdynamics.py -> build/lib/MDAnalysisTests/analysis creating build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/__init__.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/fork_called.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/test_import.py -> build/lib/MDAnalysisTests/import creating build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_neighborsearch.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_pkdtree.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/__init__.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_util.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_distances.py -> build/lib/MDAnalysisTests/lib creating build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_NAMD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop_BAD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trz_psf.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nosegid.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims2.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/CONECT2TER.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/unordered_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/incomplete.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5digitResid.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/align.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_single.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/4E43.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xl_serial.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1hvr.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nucl_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1k5i.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/A6PA6_alpha.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SINGLECONECT.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_querypdb.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/conect_parsing.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.pdb -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> build/lib/MDAnalysisTests/data/tprs creating build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/cobrotoxin.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty_atom.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/missing_atomname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_nonames.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap_0base.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sample_velocity_file.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/dppc_vesicle_hg.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/grovels.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/plength.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/make_whole.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_widebox.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xyz_random_walk.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.crd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/five.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/mini.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/chitosan.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.trj -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/test.inpcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/adk_open.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1A2C.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/C12x64.xml.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bigbox.gro.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1osm.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDrepeat.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDnewres.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5KIH.mmtf.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/testENT.ent -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.fasta -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.dms -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/merge creating build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/water.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/protein.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/ligand.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/trzfile.trz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecules.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/zinc_856218.mol2 -> build/lib/MDAnalysisTests/data/mol2 creating build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> build/lib/MDAnalysisTests/data/contacts creating build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/aaqaa.gro -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/ace.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/nma.pdb -> build/lib/MDAnalysisTests/data/capping creating build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/deletedatoms.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/mini.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.trz -> build/lib/MDAnalysisTests/data/lammps creating build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/surf2wat.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/symopt.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/c1opt.gms.gz -> build/lib/MDAnalysisTests/data/gms creating build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY -> build/lib/MDAnalysisTests/data/dlpoly creating build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_topology.pdb -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xtc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/create_data.py -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.txyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.dcd -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.trr -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/README.md -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/test_lowf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test_highf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bad_num_col.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/173D.mmtf -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_bound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/example.gsd -> build/lib/MDAnalysisTests/data -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.14.3,1.txz Installing py27-numpy-1.14.3,1... `-- Installing gcc5-5.5.0_4... | `-- Installing binutils-2.30_3,1... | `-- Extracting binutils-2.30_3,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0_1... | | `-- Installing mpfr-4.0.1... | | `-- Extracting mpfr-4.0.1: .......... done | `-- Extracting mpc-1.1.0_1: ......... done `-- Extracting gcc5-5.5.0_4: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing suitesparse-5.2.0... | `-- Installing lapack-3.5.0_4... | | `-- Installing blas-3.5.0_4... | | `-- Extracting blas-3.5.0_4: ....... done | `-- Extracting lapack-3.5.0_4: .......... done | `-- Installing metis-5.1.0_4... | `-- Extracting metis-5.1.0_4: .......... done `-- Extracting suitesparse-5.2.0: .......... done Extracting py27-numpy-1.14.3,1: .......... done Message from gcc5-5.5.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from metis-5.1.0_4: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-numpy>0 - found ===> Returning to build of py27-MDAnalysisTests-0.18.0 ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-MDAnalysis>0 - not found ===> Installing existing package /packages/All/py27-MDAnalysis-0.18.0.txz Installing py27-MDAnalysis-0.18.0... `-- Installing py27-GridDataFormats-0.4.0... | `-- Installing py27-six-1.11.0... | `-- Extracting py27-six-1.11.0: .......... done `-- Extracting py27-GridDataFormats-0.4.0: .......... done `-- Installing py27-biopython-1.71_1... | `-- Installing py27-reportlab-3.2.0... | | `-- Installing adobe-cmaps-20051217_3... | | `-- Installing fontconfig-2.12.6,1... | | | `-- Installing freetype2-2.9.1... | | | `-- Extracting freetype2-2.9.1: .......... done | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing mkfontdir-1.0.7... | | | `-- Installing mkfontscale-1.1.3... | | | `-- Installing libfontenc-1.1.3_1... | | | | `-- Installing xproto-7.0.31... | | | | `-- Extracting xproto-7.0.31: .......... done | | | `-- Extracting libfontenc-1.1.3_1: ......... done | | | `-- Extracting mkfontscale-1.1.3: ..... done | | `-- Extracting mkfontdir-1.0.7: ..... done | | `-- Extracting adobe-cmaps-20051217_3: .......... done | | `-- Installing py27-pillow-5.0.0... | | `-- Installing jpeg-turbo-1.5.3... | | `-- Extracting jpeg-turbo-1.5.3: .......... done | | `-- Installing openjpeg-2.3.0... | | | `-- Installing lcms2-2.9... | | | `-- Installing tiff-4.0.9_1... | | | | `-- Installing jbigkit-2.1_1... | | | | `-- Extracting jbigkit-2.1_1: .......... done | | | `-- Extracting tiff-4.0.9_1: .......... done | | | `-- Extracting lcms2-2.9: .......... done | | | `-- Installing png-1.6.34... | | | `-- Extracting png-1.6.34: .......... done | | `-- Extracting openjpeg-2.3.0: .......... done | | `-- Installing py27-tkinter-2.7.15_6... | | | `-- Installing tcl86-8.6.8... | | | `-- Extracting tcl86-8.6.8: .......... done | | | `-- Installing tk86-8.6.8_2... | | | `-- Installing libX11-1.6.5,1... | | | | `-- Installing kbproto-1.0.7... | | | | `-- Extracting kbproto-1.0.7: .......... done | | | | `-- Installing libXau-1.0.8_3... | | | | `-- Extracting libXau-1.0.8_3: .......... done | | | | `-- Installing libXdmcp-1.1.2... | | | | `-- Extracting libXdmcp-1.1.2: ......... done | | | | `-- Installing libxcb-1.13... | | | | `-- Installing libpthread-stubs-0.4... | | | | `-- Extracting libpthread-stubs-0.4: .... done | | | | `-- Installing libxml2-2.9.7... | | | | `-- Extracting libxml2-2.9.7: .......... done | | | | `-- Extracting libxcb-1.13: .......... done | | | `-- Extracting libX11-1.6.5,1: .......... done | | | `-- Installing libXScrnSaver-1.2.2_3... | | | | `-- Installing libXext-1.3.3_1,1... | | | | `-- Installing xextproto-7.3.0... | | | | `-- Extracting xextproto-7.3.0: .......... done | | | | `-- Extracting libXext-1.3.3_1,1: .......... done | | | | `-- Installing scrnsaverproto-1.2.2... | | | | `-- Extracting scrnsaverproto-1.2.2: ... done | | | `-- Extracting libXScrnSaver-1.2.2_3: .......... done | | | `-- Installing libXft-2.3.2_1... | | | | `-- Installing libXrender-0.9.10... | | | | `-- Installing renderproto-0.11.1... | | | | `-- Extracting renderproto-0.11.1: .... done | | | | `-- Extracting libXrender-0.9.10: .......... done | | | `-- Extracting libXft-2.3.2_1: .......... done | | | `-- Extracting tk86-8.6.8_2: .......... done | | `-- Extracting py27-tkinter-2.7.15_6: ........ done | | `-- Installing webp-1.0.0... | | | `-- Installing giflib-5.1.4... | | | `-- Extracting giflib-5.1.4: .......... done | | `-- Extracting webp-1.0.0: .......... done | | `-- Extracting py27-pillow-5.0.0: .......... done | `-- Extracting py27-reportlab-3.2.0: .......... done `-- Extracting py27-biopython-1.71_1: .......... done `-- Installing py27-duecredit-0.6.4... | `-- Installing py27-citeproc-py-0.4.0... | | `-- Installing py27-lxml-4.1.1... | | `-- Installing libxslt-1.1.32... | | | `-- Installing libgcrypt-1.8.3... | | | `-- Installing libgpg-error-1.31... | | | `-- Extracting libgpg-error-1.31: .......... done | | | `-- Extracting libgcrypt-1.8.3: .......... done | | `-- Extracting libxslt-1.1.32: .......... done | | `-- Extracting py27-lxml-4.1.1: .......... done | `-- Extracting py27-citeproc-py-0.4.0: .......... done | `-- Installing py27-requests-2.18.4... | | `-- Installing py27-certifi-2018.4.16... | | `-- Extracting py27-certifi-2018.4.16: .......... done | | `-- Installing py27-chardet-3.0.4... | | `-- Extracting py27-chardet-3.0.4: .......... done | | `-- Installing py27-idna-2.6... | | `-- Extracting py27-idna-2.6: .......... done | | `-- Installing py27-urllib3-1.22,1... | | `-- Installing py27-cryptography-2.1.4... | | | `-- Installing py27-asn1crypto-0.22.0... | | | `-- Extracting py27-asn1crypto-0.22.0: .......... done | | | `-- Installing py27-cffi-1.11.5... | | | `-- Installing py27-pycparser-2.18... | | | `-- Extracting py27-pycparser-2.18: .......... done | | | `-- Extracting py27-cffi-1.11.5: .......... done | | | `-- Installing py27-enum34-1.1.6... | | | `-- Extracting py27-enum34-1.1.6: .......... done | | | `-- Installing py27-ipaddress-1.0.22... | | | `-- Extracting py27-ipaddress-1.0.22: .......... done | | `-- Extracting py27-cryptography-2.1.4: .......... done | | `-- Installing py27-openssl-17.5.0_1... | | `-- Extracting py27-openssl-17.5.0_1: .......... done | | `-- Installing py27-pysocks-1.6.8... | | `-- Extracting py27-pysocks-1.6.8: .......... done | | `-- Extracting py27-urllib3-1.22,1: .......... done | `-- Extracting py27-requests-2.18.4: .......... done `-- Extracting py27-duecredit-0.6.4: .......... done `-- Installing py27-gsd-1.5.2... `-- Extracting py27-gsd-1.5.2: .......... done `-- Installing py27-joblib-0.9.4... `-- Extracting py27-joblib-0.9.4: .......... done `-- Installing py27-matplotlib-2.1.2_2... | `-- Installing atk-2.24.0... | | `-- Installing glib-2.50.3_4,1... | | `-- Installing libiconv-1.14_11... | | `-- Extracting libiconv-1.14_11: .......... done | | `-- Installing pcre-8.42... | | `-- Extracting pcre-8.42: .......... done | | `-- Installing perl5-5.26.2... | | `-- Extracting perl5-5.26.2: .......... done | | `-- Extracting glib-2.50.3_4,1: .......... done No schema files found: doing nothing. | `-- Extracting atk-2.24.0: .......... done | `-- Installing cairo-1.14.8_1,2... | | `-- Installing dri2proto-2.8... | | `-- Extracting dri2proto-2.8: .... done | | `-- Installing glproto-1.4.17... | | `-- Extracting glproto-1.4.17: 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| | `-- Extracting gtk-update-icon-cache-2.24.32: .... done | `-- Extracting gtk2-2.24.32: .......... done | `-- Installing libglade2-2.6.4_9... | | `-- Installing xmlcatmgr-2.2_2... | | `-- Extracting xmlcatmgr-2.2_2: ......... done + Creating /usr/local/share/sgml/catalog + Registering CATALOG catalog.ports (SGML) + Creating /usr/local/share/sgml/catalog.ports + Creating /usr/local/share/xml/catalog + Registering nextCatalog catalog.ports (XML) + Creating /usr/local/share/xml/catalog.ports | `-- Extracting libglade2-2.6.4_9: .......... done | `-- Installing py27-backports.functools_lru_cache-1.5... | | `-- Installing py27-backports-1... | | `-- Extracting py27-backports-1: ...... done | `-- Extracting py27-backports.functools_lru_cache-1.5: .......... done | `-- Installing py27-cycler-0.10.0... | `-- Extracting py27-cycler-0.10.0: .......... done | `-- Installing py27-dateutil-2.6.1... | `-- Extracting py27-dateutil-2.6.1: .......... done | `-- Installing py27-gobject-2.28.6_8... | | `-- Installing py27-cairo-1.14.1... | | `-- Extracting py27-cairo-1.14.1: .......... done | `-- Extracting py27-gobject-2.28.6_8: .......... done | `-- Installing py27-gtk2-2.24.0_5... | `-- Extracting py27-gtk2-2.24.0_5: .......... done | `-- Installing py27-pyparsing-2.2.0... | `-- Extracting py27-pyparsing-2.2.0: .......... done | `-- Installing py27-pytz-2018.5,1... | `-- Extracting py27-pytz-2018.5,1: .......... done | `-- Installing py27-tornado-5.0.2... | | `-- Installing py27-backports_abc-0.5... | | `-- Extracting py27-backports_abc-0.5: .......... done | | `-- Installing py27-singledispatch-3.4.0.3_1... | | `-- Extracting py27-singledispatch-3.4.0.3_1: .......... done | `-- Extracting py27-tornado-5.0.2: .......... done `-- Extracting py27-matplotlib-2.1.2_2: .......... done `-- Installing py27-mmtf-python-1.1.2... | `-- Installing py27-msgpack-0.5.6... | `-- Extracting py27-msgpack-0.5.6: .......... done `-- Extracting py27-mmtf-python-1.1.2: .......... done `-- Installing py27-networkx-1.10_4... | `-- Installing py27-decorator-4.3.0... | `-- Extracting py27-decorator-4.3.0: .......... done | `-- Installing py27-pygraphviz-1.3.1... | | `-- Installing graphviz-2.40.1_5... | | `-- Installing libXaw-1.0.13,2... | | | `-- Installing libXmu-1.1.2_3,1... | | | `-- Extracting libXmu-1.1.2_3,1: .......... done | | | `-- Installing libXp-1.0.3,1... | | | `-- Installing printproto-1.0.5... | | | `-- Extracting printproto-1.0.5: .... done | | | `-- Extracting libXp-1.0.3,1: .......... done | | | `-- Installing libXpm-3.5.12... | | | `-- Extracting libXpm-3.5.12: .......... done | | `-- Extracting libXaw-1.0.13,2: .......... done | | `-- Installing libgd-2.2.4_1,1... | | `-- Extracting libgd-2.2.4_1,1: .......... done | | `-- Installing libltdl-2.4.6... | | `-- Extracting libltdl-2.4.6: .......... done | | `-- Extracting graphviz-2.40.1_5: .......... done | `-- Extracting py27-pygraphviz-1.3.1: .......... done | `-- Installing py27-scikit-sparse-0.4.3_1... | | `-- Installing py27-scipy-1.1.0... | | `-- Extracting py27-scipy-1.1.0: .......... done | `-- Extracting py27-scikit-sparse-0.4.3_1: .......... done | `-- Installing py27-yaml-3.12... | `-- Extracting py27-yaml-3.12: .......... done `-- Extracting py27-networkx-1.10_4: .......... done Extracting py27-MDAnalysis-0.18.0: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from py27-urllib3-1.22,1: Be careful, support of IPv6 is broken with PySocks 1.5.7. Message from perl5-5.26.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from ca_root_nss-3.38: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from xmlcatmgr-2.2_2: The following catalogs are installed: 1) /usr/local/share/sgml/catalog The top level catalog for SGML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 2) /usr/local/share/sgml/catalog.ports This catalog is for handling SGML stuff installed under /usr/local/share/sgml. It is changed by ports/packages. 3) /usr/local/share/xml/catalog The top level catalog for XML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 4) /usr/local/share/xml/catalog.ports This catalog is for handling XML stuff installed under /usr/local/share/xml. It is changed by ports/packages. ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-MDAnalysis>0 - found ===> Returning to build of py27-MDAnalysisTests-0.18.0 ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-pytest>=3.1.2 - not found ===> Installing existing package /packages/All/py27-pytest-3.4.2.txz Installing py27-pytest-3.4.2... `-- Installing py27-attrs-18.1.0... `-- Extracting py27-attrs-18.1.0: .......... done `-- Installing py27-funcsigs-1.0.2... `-- Extracting py27-funcsigs-1.0.2: .......... done `-- Installing py27-pluggy-0.6.0... `-- Extracting py27-pluggy-0.6.0: .......... done `-- Installing py27-py-1.5.3... `-- Extracting py27-py-1.5.3: .......... done Extracting py27-pytest-3.4.2: .......... done ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-pytest>=3.1.2 - found ===> Returning to build of py27-MDAnalysisTests-0.18.0 ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-hypothesis>0 - not found ===> Installing existing package /packages/All/py27-hypothesis-3.56.10.txz Installing py27-hypothesis-3.56.10... `-- Installing py27-coverage-4.5.1_1... `-- Extracting py27-coverage-4.5.1_1: .......... done `-- Installing py27-sqlite3-2.7.15_7... | `-- Installing sqlite3-3.24.0_1... | `-- Extracting sqlite3-3.24.0_1: .......... done `-- Extracting py27-sqlite3-2.7.15_7: ........ done Extracting py27-hypothesis-3.56.10: .......... done ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-hypothesis>0 - found ===> Returning to build of py27-MDAnalysisTests-0.18.0 ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-psutil>=4.0.2 - not found ===> Installing existing package /packages/All/py27-psutil-5.4.6.txz Installing py27-psutil-5.4.6... Extracting py27-psutil-5.4.6: .......... done ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-psutil>=4.0.2 - found ===> Returning to build of py27-MDAnalysisTests-0.18.0 ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-mock>=2.0.0 - not found ===> Installing existing package /packages/All/py27-mock-2.0.0.txz Installing py27-mock-2.0.0... `-- Installing py27-pbr-3.1.1... | `-- Installing py27-pip-9.0.3... | `-- Extracting py27-pip-9.0.3: .......... done `-- Extracting py27-pbr-3.1.1: .......... done Extracting py27-mock-2.0.0: .......... done Message from py27-pip-9.0.3: ============================== !!!! WARNING !!!! ========================== pip MUST ONLY be used: * With the --user flag, OR * To install or manage Python packages in virtual environments Failure to follow this warning can and will result in an inconsistent system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and cause errors. Avoid using pip as root unless you know what you're doing. ============================== !!!! WARNING !!!! ========================== ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-mock>=2.0.0 - found ===> Returning to build of py27-MDAnalysisTests-0.18.0 ===> py27-MDAnalysisTests-0.18.0 depends on package: py27-setuptools>0 - found ===> py27-MDAnalysisTests-0.18.0 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-MDAnalysisTests-0.18.0 ===> Generating temporary packing list running install running build running build_py copying MDAnalysisTests/authors.py -> build/lib/MDAnalysisTests running install_lib creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7 creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_encore.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_diffusionmap.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_gnm.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_leaflet.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hole.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_persistencelength.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_helanal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_contacts.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hbonds.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_waterdynamics.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_pca.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_density.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_align.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_wbridge.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_lineardensity.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_psa.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/test_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomselections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_updating_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topology.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_group_traj_access.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_universe.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_fragments.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyobjects.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atom.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residue.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyattrs.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_requires.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_index_dtype.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_groups.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residuegroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segmentgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_neighborsearch.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_pkdtree.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/test_streamlines.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/test_xvg.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trz_psf.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/align.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/4E43.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_querypdb.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims2.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_single.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5digitResid.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/incomplete.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/conect_parsing.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/unordered_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_NAMD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/CONECT2TER.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xl_serial.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1k5i.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1hvr.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nosegid.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop_BAD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nucl_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/A6PA6_alpha.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SINGLECONECT.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty_atom.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_nonames.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/test.inpcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/chitosan.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.nc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.trj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/C12x64.xml.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_lowf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_highf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/deletedatoms.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/mini.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/residwrap_0base.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/nma.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/aaqaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/ace.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDnewres.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/make_whole.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1A2C.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.crd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sample_velocity_file.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_widebox.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bad_num_col.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/dppc_vesicle_hg.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bigbox.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1osm.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/example.gsd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/xyz_random_walk.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/five.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/mini.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/173D.mmtf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/zinc_856218.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecules.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/chainIDrepeat.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/grovels.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/plength.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_bound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/create_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_topology.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.txyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/5KIH.mmtf.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.fasta -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/testENT.ent -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.dms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/ligand.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/water.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/protein.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trzfile.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/c1opt.gms.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/surf2wat.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/symopt.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/missing_atomname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/test_import.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/fork_called.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/dummy.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/tempdir.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libdcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libmdaxdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_hoomdxml.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_str_types.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xpdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_psf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_guessers.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_tprparser.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_minimal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_lammpsdata.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_top.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/authors.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_authors.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_selections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_duecredits.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_log.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_transformations.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_streamio.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_imports.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_altloc.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_modelling.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_meta.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_deprecated.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_persistence.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_qcprot.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_units.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_failure.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_reader_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_lammps.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_chainreader.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_writer_registration.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_timestep_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_amber_inpcrd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_null.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_memory.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_netcdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trj.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/reference.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_encore.py to test_encore.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_diffusionmap.py to test_diffusionmap.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_gnm.py to test_gnm.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_leaflet.py to test_leaflet.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_hole.py to test_hole.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_rms.py to test_rms.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_rdf.py to test_rdf.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_nuclinfo.py to test_nuclinfo.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_distances.py to test_distances.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_persistencelength.py to test_persistencelength.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py to test_hydrogenbondautocorrel.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_helanal.py to test_helanal.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_contacts.py to test_contacts.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_hbonds.py to test_hbonds.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_waterdynamics.py to test_waterdynamics.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_pca.py to test_pca.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_base.py to test_base.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_density.py to test_density.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_align.py to test_align.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_wbridge.py to test_wbridge.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_lineardensity.py to test_lineardensity.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_psa.py to test_psa.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/test_api.py to test_api.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_atomselections.py to test_atomselections.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_updating_atomgroup.py to test_updating_atomgroup.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_topology.py to test_topology.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_group_traj_access.py to test_group_traj_access.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_segment.py to test_segment.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_copying.py to test_copying.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_universe.py to test_universe.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_fragments.py to test_fragments.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_topologyobjects.py to test_topologyobjects.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_atom.py to test_atom.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_residue.py to test_residue.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_topologyattrs.py to test_topologyattrs.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_requires.py to test_requires.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_index_dtype.py to test_index_dtype.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_atomgroup.py to test_atomgroup.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_groups.py to test_groups.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_residuegroup.py to test_residuegroup.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_segmentgroup.py to test_segmentgroup.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_neighborsearch.py to test_neighborsearch.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_pkdtree.py to test_pkdtree.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_util.py to test_util.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_distances.py to test_distances.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization/test_streamlines.py to test_streamlines.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary/base.py to base.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary/test_xvg.py to test_xvg.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates/create_data.py to create_data.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import/test_import.py to test_import.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import/fork_called.py to fork_called.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/dummy.py to dummy.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/tempdir.py to tempdir.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/datafiles.py to datafiles.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/util.py to util.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats/test_libdcd.py to test_libdcd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats/test_libmdaxdr.py to test_libmdaxdr.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_hoomdxml.py to test_hoomdxml.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/base.py to base.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_pdb.py to test_pdb.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_pdbqt.py to test_pdbqt.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_topology_base.py to test_topology_base.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_mmtf.py to test_mmtf.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_topology_str_types.py to test_topology_str_types.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_xyz.py to test_xyz.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_xpdb.py to test_xpdb.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_txyz.py to test_txyz.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_dms.py to test_dms.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_psf.py to test_psf.pyc byte-compiling 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'TODO' warning: no files found matching 'SUMMARY.txt' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pkl' found anywhere in distribution writing manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' Copying MDAnalysisTests.egg-info to /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests-0.18.0-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-MDAnalysisTests/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-MDAnalysisTests-0.18.0 file sizes/checksums [625]: ....... done packing files [625]: ....... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 21 JUL 2018 at 22:37:24 UTC Duration: 00:04:27