=> Building science/openbabel Started : Friday, 20 JUL 2018 at 07:18:00 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for openbabel-2.4.1_1: CAIRO=off: PNG support via cairo library GUI=on: GUI (Graphical User Interface) support PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/openbabel XDG_CONFIG_HOME=/construction/science/openbabel HOME=/construction/science/openbabel TMPDIR="/tmp" PATH=/construction/science/openbabel/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 WX_CONFIG=/usr/local/bin/wxgtk2u-3.0-config -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/openbabel XDG_CONFIG_HOME=/construction/science/openbabel HOME=/construction/science/openbabel TMPDIR="/tmp" PATH=/construction/science/openbabel/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 WX_CONFIG=/usr/local/bin/wxgtk2u-3.0-config PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing -std=c++11" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/openbabel/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- VERSION="2.4.1" PORTDOCS="" PORTEXAMPLES="" CAIRO="@comment " NO_CAIRO="" GUI="" NO_GUI="@comment " PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- CAIRO="@comment " NO_CAIRO="" GUI="" NO_GUI="@comment " PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv2+ accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> openbabel-2.4.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> openbabel-2.4.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of openbabel-2.4.1_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by openbabel-2.4.1_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by openbabel-2.4.1_1 for building => SHA256 Checksum OK for openbabel-2.4.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by openbabel-2.4.1_1 for building ===> Extracting for openbabel-2.4.1_1 ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by openbabel-2.4.1_1 for building => SHA256 Checksum OK for openbabel-2.4.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for openbabel-2.4.1_1 ===> Applying dragonfly patches for openbabel-2.4.1_1 /usr/bin/sed -i.bak -e '/pkgconfig/s,${LIB_INSTALL_DIR},libdata,' /construction/science/openbabel/openbabel-2.4.1/CMakeLists.txt /usr/bin/sed -i.bak -e 's,man/man1,../man/man1,' /construction/science/openbabel/openbabel-2.4.1/doc/CMakeLists.txt /usr/bin/sed -i.bak -e '/find_package(Cairo)/d' /construction/science/openbabel/openbabel-2.4.1/CMakeLists.txt -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> openbabel-2.4.1_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.11.4_1.txz Installing cmake-3.11.4_1... `-- Installing curl-7.60.0... | `-- Installing ca_root_nss-3.38... | `-- Extracting ca_root_nss-3.38: ........ done | `-- Installing krb5-1.16.1_5... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | | `-- Installing libressl-2.7.4... | | `-- Extracting libressl-2.7.4: .......... done | | `-- Installing pkgconf-1.4.2,1... | | `-- Extracting pkgconf-1.4.2,1: .......... done | | `-- Installing readline-7.0.3_1... | | `-- Installing ncurses-6.0.0s20171223_1... | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Extracting readline-7.0.3_1: .......... done | `-- Extracting krb5-1.16.1_5: .......... done | `-- Installing libnghttp2-1.32.0... | `-- Extracting libnghttp2-1.32.0: .......... done `-- Extracting curl-7.60.0: .......... done `-- Installing expat-2.2.5... `-- Extracting expat-2.2.5: .......... done `-- Installing jsoncpp-1.8.1_3... `-- Extracting jsoncpp-1.8.1_3: .......... done `-- Installing libarchive-3.3.2,1... | `-- Installing liblz4-1.8.2,1... | `-- Extracting liblz4-1.8.2,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.2,1: .......... done `-- Installing libuv-1.21.0... `-- Extracting libuv-1.21.0: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.11.4_1: .......... done Message from ca_root_nss-3.38: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> openbabel-2.4.1_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of openbabel-2.4.1_1 ===> openbabel-2.4.1_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.3.4.txz Installing eigen-3.3.4... Extracting eigen-3.3.4: .......... done ===> openbabel-2.4.1_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of openbabel-2.4.1_1 ===> openbabel-2.4.1_1 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.15.txz Installing python27-2.7.15... `-- Installing libffi-3.2.1_2... `-- Extracting libffi-3.2.1_2: .......... done Extracting python27-2.7.15: .......... done Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> openbabel-2.4.1_1 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of openbabel-2.4.1_1 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> openbabel-2.4.1_1 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.7.txz Installing libxml2-2.9.7... Extracting libxml2-2.9.7: .......... done ===> openbabel-2.4.1_1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of openbabel-2.4.1_1 ===> openbabel-2.4.1_1 depends on shared library: libwx_baseu-3.0.so - not found ===> Installing existing package /packages/All/wx30-gtk2-3.0.4.txz Installing wx30-gtk2-3.0.4... `-- Installing ORBit2-2.14.19_2... | `-- Installing glib-2.50.3_4,1... | | `-- Installing libiconv-1.14_11... | | `-- Extracting libiconv-1.14_11: .......... done | | `-- Installing pcre-8.42... | | `-- Extracting pcre-8.42: .......... done | | `-- Installing perl5-5.26.2... | | `-- Extracting perl5-5.26.2: .......... done | `-- Extracting glib-2.50.3_4,1: .......... done No schema files found: doing nothing. | `-- Installing libIDL-0.8.14_3... | `-- Extracting libIDL-0.8.14_3: ......... done `-- Extracting ORBit2-2.14.19_2: .......... done `-- Installing atk-2.24.0... `-- Extracting atk-2.24.0: .......... done `-- Installing gconf2-3.2.6_5... | `-- Installing dbus-glib-0.108... | | `-- Installing dbus-1.10.16_1... | | `-- Installing libICE-1.0.9_1,1... | | | `-- Installing xproto-7.0.31... | | | `-- Extracting xproto-7.0.31: .......... done | | `-- Extracting libICE-1.0.9_1,1: .......... done | | `-- Installing libSM-1.2.2_3,1... | | `-- Extracting libSM-1.2.2_3,1: .......... done | | `-- Installing libX11-1.6.5,1... | | | `-- Installing kbproto-1.0.7... | | | `-- Extracting kbproto-1.0.7: .......... done | | | `-- Installing libXau-1.0.8_3... | | | `-- Extracting libXau-1.0.8_3: .......... done | | | `-- Installing libXdmcp-1.1.2... | | | `-- Extracting libXdmcp-1.1.2: ......... done | | | `-- Installing libxcb-1.13... | | | `-- Installing libpthread-stubs-0.4... | | | `-- Extracting libpthread-stubs-0.4: .... done | | | `-- Extracting libxcb-1.13: .......... done | | `-- Extracting libX11-1.6.5,1: .......... done ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | `-- Extracting dbus-1.10.16_1: ......... done | `-- Extracting dbus-glib-0.108: .......... done | `-- Installing dconf-0.26.1... | `-- Extracting dconf-0.26.1: .......... done | `-- Installing gtk2-2.24.32... | | `-- Installing cups-2.2.8_1... | | `-- Installing avahi-app-0.6.31_6... | | | `-- Installing gdbm-1.13_1... | | | `-- Extracting gdbm-1.13_1: .......... done | | | `-- Installing gnome_subr-1.0... | | | `-- Extracting gnome_subr-1.0: .... done | | | `-- Installing gobject-introspection-1.50.0_1,1... | | | `-- Extracting gobject-introspection-1.50.0_1,1: .......... done | | | `-- Installing libdaemon-0.14_1... | | | `-- Extracting libdaemon-0.14_1: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | | `-- Extracting avahi-app-0.6.31_6: .......... done | | `-- Installing gnutls-3.5.18... | | | `-- Installing gmp-6.1.2... | | | `-- Extracting gmp-6.1.2: .......... done | | | `-- Installing libidn2-2.0.5... | | | `-- Installing libunistring-0.9.10... | | | `-- Extracting libunistring-0.9.10: .......... done | | | `-- Extracting libidn2-2.0.5: .......... done | | | `-- Installing libtasn1-4.13... | | | `-- Extracting libtasn1-4.13: .......... done | | | `-- Installing nettle-3.4... | | | `-- Extracting nettle-3.4: .......... done | | | `-- Installing p11-kit-0.23.12... | | | `-- Extracting p11-kit-0.23.12: .......... done | | | `-- Installing trousers-0.3.14_2... | | | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting trousers-0.3.14_2: .......... done | | `-- Extracting gnutls-3.5.18: .......... done | | `-- Installing libpaper-1.1.24.4... | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | | `-- Extracting cups-2.2.8_1: .......... done | | `-- Installing gdk-pixbuf2-2.36.11... | | `-- Installing jasper-1.900.1_17... | | | `-- Installing jpeg-turbo-1.5.3... | | | `-- Extracting jpeg-turbo-1.5.3: .......... done | | `-- Extracting jasper-1.900.1_17: .......... done | | `-- Installing libXi-1.7.9,1... | | | `-- Installing inputproto-2.3.2... | | | `-- Extracting inputproto-2.3.2: ........ done | | | `-- Installing libXext-1.3.3_1,1... | | | `-- Installing xextproto-7.3.0... | | | `-- Extracting xextproto-7.3.0: .......... done | | | `-- Extracting libXext-1.3.3_1,1: .......... done | | | `-- Installing libXfixes-5.0.3... | | | `-- Installing fixesproto-5.0... | | | `-- Extracting fixesproto-5.0: .... done | | | `-- Extracting libXfixes-5.0.3: .......... done | | `-- Extracting libXi-1.7.9,1: .......... done | | `-- Installing libXt-1.1.5,1... | | `-- Extracting libXt-1.1.5,1: .......... done | | `-- Installing png-1.6.34... | | `-- Extracting png-1.6.34: .......... done | | `-- Installing shared-mime-info-1.8... | | `-- Extracting shared-mime-info-1.8: .......... done | | `-- Installing tiff-4.0.9_1... | | | `-- Installing jbigkit-2.1_1... | | | `-- Extracting jbigkit-2.1_1: .......... done | | `-- Extracting tiff-4.0.9_1: .......... done | | `-- Extracting gdk-pixbuf2-2.36.11: .......... done | | `-- Installing gtk-update-icon-cache-2.24.32... | | `-- Installing hicolor-icon-theme-0.15... | | `-- Extracting hicolor-icon-theme-0.15: . done | | `-- Installing libXcomposite-0.4.4_3,1... | | | `-- Installing compositeproto-0.4.2... | | | `-- Extracting compositeproto-0.4.2: ....... done | | `-- Extracting libXcomposite-0.4.4_3,1: .......... done | | `-- Installing libXcursor-1.1.15... | | | `-- Installing libXrender-0.9.10... | | | `-- Installing renderproto-0.11.1... | | | `-- Extracting renderproto-0.11.1: .... done | | | `-- Extracting libXrender-0.9.10: .......... done | | `-- Extracting libXcursor-1.1.15: .......... done | | `-- Installing libXdamage-1.1.4_3... | | | `-- Installing damageproto-1.2.1... | | | `-- Extracting damageproto-1.2.1: .... done | | `-- Extracting libXdamage-1.1.4_3: ...... done | | `-- Installing libXinerama-1.1.3_3,1... | | | `-- Installing xineramaproto-1.2.1... | | | `-- Extracting xineramaproto-1.2.1: .. done | | `-- Extracting libXinerama-1.1.3_3,1: .......... done | | `-- Installing libXrandr-1.5.1... | | | `-- Installing randrproto-1.5.0... | | | `-- Extracting randrproto-1.5.0: ....... done | | `-- Extracting libXrandr-1.5.1: .......... done | | `-- Installing pango-1.42.0... | | | `-- Installing cairo-1.14.8_1,2... | | | `-- Installing dri2proto-2.8... | | | `-- Extracting dri2proto-2.8: .... done | | | `-- Installing fontconfig-2.12.6,1... | | | | `-- Installing freetype2-2.9.1... | | | | `-- Extracting freetype2-2.9.1: .......... done | | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | | `-- Installing glproto-1.4.17... | | | `-- Extracting glproto-1.4.17: ...... done | | | `-- Installing mesa-libs-18.1.2... | | | | `-- Installing libXxf86vm-1.1.4_1... | | | | `-- Installing xf86vidmodeproto-2.3.1... | | | | `-- Extracting xf86vidmodeproto-2.3.1: .... done | | | | `-- Extracting libXxf86vm-1.1.4_1: .......... done | | | | `-- Installing libdrm-2.4.92,1... | | | | `-- Installing libpciaccess-0.13.5... | | | | | `-- Installing pciids-20180428... | | | | | `-- Extracting pciids-20180428: ..... done | | | | `-- Extracting libpciaccess-0.13.5: ......... done | | | | `-- Extracting libdrm-2.4.92,1: .......... done | | | | `-- Installing libelf-0.8.13_3... | | | | `-- Extracting libelf-0.8.13_3: .......... done | | | | `-- Installing libxshmfence-1.2_2... | | | | `-- Extracting libxshmfence-1.2_2: ......... done | | | `-- Extracting mesa-libs-18.1.2: .......... done | | | `-- Installing pixman-0.34.0... | | | `-- Extracting pixman-0.34.0: .......... done | | | `-- Installing xcb-util-renderutil-0.3.9_1... | | | | `-- Installing xcb-util-0.4.0_2,1... | | | | `-- Extracting xcb-util-0.4.0_2,1: .......... done | | | `-- Extracting xcb-util-renderutil-0.3.9_1: ...... done | | | `-- Extracting cairo-1.14.8_1,2: .......... done | | | `-- Installing encodings-1.0.4_4,1... | | | `-- Installing font-util-1.3.1... | | | `-- Extracting font-util-1.3.1: .......... done | | | `-- Extracting encodings-1.0.4_4,1: .......... done | | | `-- Installing fribidi-0.19.7... | | | `-- Extracting fribidi-0.19.7: .......... done | | | `-- Installing harfbuzz-1.8.2... | | | `-- Installing graphite2-1.3.11... | | | `-- Extracting graphite2-1.3.11: .......... done | | | `-- Extracting harfbuzz-1.8.2: .......... done | | | `-- Installing libXft-2.3.2_1... | | | `-- Extracting libXft-2.3.2_1: .......... done | | | `-- Installing xorg-fonts-truetype-7.7_1... | | | `-- Installing dejavu-2.37... | | | | `-- Installing mkfontdir-1.0.7... | | | | `-- Installing mkfontscale-1.1.3... | | | | | `-- Installing libfontenc-1.1.3_1... | | | | | `-- Extracting libfontenc-1.1.3_1: ......... done | | | | `-- Extracting mkfontscale-1.1.3: ..... done | | | | `-- Extracting mkfontdir-1.0.7: ..... done | | | `-- Extracting dejavu-2.37: .......... done | | | `-- Installing font-bh-ttf-1.0.3_3... | | | `-- Extracting font-bh-ttf-1.0.3_3: .......... done | | | `-- Installing font-misc-ethiopic-1.0.3_3... | | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done | | | `-- Installing font-misc-meltho-1.0.3_3... | | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done | | `-- Extracting pango-1.42.0: .......... done | | `-- Extracting gtk-update-icon-cache-2.24.32: .... done | `-- Extracting gtk2-2.24.32: .......... done | `-- Installing polkit-0.114... | | `-- 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For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> openbabel-2.4.1_1 depends on shared library: libwx_baseu-3.0.so - found (/usr/local/lib/libwx_baseu-3.0.so) ===> Returning to build of openbabel-2.4.1_1 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for openbabel-2.4.1_1 ===> Performing out-of-source build /bin/mkdir -p /construction/science/openbabel/.build -- The C compiler identification is GNU 5.4.1 -- The CXX compiler identification is GNU 5.4.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:16 (cmake_policy): The OLD behavior for policy CMP0005 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. CMake Deprecation Warning at CMakeLists.txt:18 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.7") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Found wxWidgets: -L/usr/local/lib;-pthread;;;-lwx_baseu-3.0;-lwx_gtk2u_core-3.0;-lwx_gtk2u_adv-3.0 (found version "3.0.4") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Could NOT find Cairo. PNG output will NOT be supported. -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.15") -- Found PythonLibs: /usr/local/lib/libpython2.7.so (found version "2.7.15") -- Python bindings will be compiled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_C_FLAGS_DEBUG THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/openbabel/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for openbabel-2.4.1_1 /usr/local/bin/cmake -H/construction/science/openbabel/openbabel-2.4.1 -B/construction/science/openbabel/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/openbabel/.build/CMakeFiles /construction/science/openbabel/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- src/CMakeFiles/openbabel.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/CMakeFiles/openbabel.dir/all --- /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/openbabel.dir/DependInfo.cmake --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats/libinchi /construction/science/openbabel/.build/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake Scanning dependencies of target inchi /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o --- [ 0%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o --- src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.o --- [ 0%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichican2.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichican2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o --- cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichi_bns.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.o --- [ 0%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichi_io.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichi_io.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichicano.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichicano.c --- src/CMakeFiles/openbabel.dir/all --- Scanning dependencies of target openbabel /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build --- src/CMakeFiles/openbabel.dir/alias.o --- [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/alias.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/alias.o -c /construction/science/openbabel/openbabel-2.4.1/src/alias.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichicans.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichicans.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiisot.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichiisot.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichilnct.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichilnct.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichimak2.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichimak2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichimake.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichimake.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichimap1.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichimap1.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichimap2.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichimap2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichimap4.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichimap4.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/atom.o --- [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/atom.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/atom.o -c /construction/science/openbabel/openbabel-2.4.1/src/atom.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichinorm.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichinorm.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiparm.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichiparm.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiprt1.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiprt2.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiprt3.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiqueu.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiread.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichiread.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiring.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichiring.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr1.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr2.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr3.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/base.o --- [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/base.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/base.o -c /construction/science/openbabel/openbabel-2.4.1/src/base.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr4.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/bitvec.o --- [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 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CMakeFiles/openbabel.dir/bond.o -c /construction/science/openbabel/openbabel-2.4.1/src/bond.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr5.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr6.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr7.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichirvr7.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichisort.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichisort.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichister.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichister.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichister.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/bondtyper.o --- [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/bondtyper.o -c /construction/science/openbabel/openbabel-2.4.1/src/bondtyper.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.o --- [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichitaut.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ichitaut.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ikey_base26.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ikey_base26.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ikey_dll.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/ikey_dll.c --- src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/inchi_dll.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/inchi_dll.c --- src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/inchi_dll_a.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c --- src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/inchi_dll_a2.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o --- [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/inchi_dll_main.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/inchi_dll_main.c --- src/formats/libinchi/CMakeFiles/inchi.dir/runichi.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/runichi.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/runichi.c --- src/formats/libinchi/CMakeFiles/inchi.dir/sha2.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/sha2.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/sha2.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/sha2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/strutil.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/strutil.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/strutil.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/builder.o --- [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/builder.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/builder.o -c /construction/science/openbabel/openbabel-2.4.1/src/builder.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/util.o --- [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/util.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi/util.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/canon.o --- [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/canon.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/canon.o -c /construction/science/openbabel/openbabel-2.4.1/src/canon.cpp --- src/CMakeFiles/openbabel.dir/chains.o --- [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/chains.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chains.o -c /construction/science/openbabel/openbabel-2.4.1/src/chains.cpp --- src/CMakeFiles/openbabel.dir/chargemodel.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chargemodel.o -c /construction/science/openbabel/openbabel-2.4.1/src/chargemodel.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- lib/libinchi.so.0.4.1 --- [ 8%] Linking C shared library ../../../lib/libinchi.so cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -shared -Wl,-soname,libinchi.so.0 -o ../../../lib/libinchi.so.0.4.1 CMakeFiles/inchi.dir/ichi_bns.o CMakeFiles/inchi.dir/ichi_io.o CMakeFiles/inchi.dir/ichican2.o CMakeFiles/inchi.dir/ichicano.o CMakeFiles/inchi.dir/ichicans.o CMakeFiles/inchi.dir/ichiisot.o CMakeFiles/inchi.dir/ichilnct.o CMakeFiles/inchi.dir/ichimak2.o CMakeFiles/inchi.dir/ichimake.o CMakeFiles/inchi.dir/ichimap1.o CMakeFiles/inchi.dir/ichimap2.o CMakeFiles/inchi.dir/ichimap4.o CMakeFiles/inchi.dir/ichinorm.o CMakeFiles/inchi.dir/ichiparm.o CMakeFiles/inchi.dir/ichiprt1.o CMakeFiles/inchi.dir/ichiprt2.o CMakeFiles/inchi.dir/ichiprt3.o CMakeFiles/inchi.dir/ichiqueu.o CMakeFiles/inchi.dir/ichiread.o CMakeFiles/inchi.dir/ichiring.o CMakeFiles/inchi.dir/ichirvr1.o CMakeFiles/inchi.dir/ichirvr2.o CMakeFiles/inchi.dir/ichirvr3.o CMakeFiles/inchi.dir/ichirvr4.o CMakeFiles/inchi.dir/ichirvr5.o CMakeFiles/inchi.dir/ichirvr6.o CMakeFiles/inchi.dir/ichirvr7.o CMakeFiles/inchi.dir/ichisort.o CMakeFiles/inchi.dir/ichister.o CMakeFiles/inchi.dir/ichitaut.o CMakeFiles/inchi.dir/ikey_base26.o CMakeFiles/inchi.dir/ikey_dll.o CMakeFiles/inchi.dir/inchi_dll.o CMakeFiles/inchi.dir/inchi_dll_a.o CMakeFiles/inchi.dir/inchi_dll_a2.o CMakeFiles/inchi.dir/inchi_dll_main.o CMakeFiles/inchi.dir/runichi.o CMakeFiles/inchi.dir/sha2.o CMakeFiles/inchi.dir/strutil.o CMakeFiles/inchi.dir/util.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib -lm -ldl -lz -lc cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libinchi.so.0.4.1 ../../../lib/libinchi.so.0 ../../../lib/libinchi.so [ 8%] Built target inchi --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/chiral.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/chiral.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chiral.o -c /construction/science/openbabel/openbabel-2.4.1/src/chiral.cpp --- src/CMakeFiles/openbabel.dir/data.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/data.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/data.o -c /construction/science/openbabel/openbabel-2.4.1/src/data.cpp --- src/CMakeFiles/openbabel.dir/data_utilities.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/data_utilities.o -c /construction/science/openbabel/openbabel-2.4.1/src/data_utilities.cpp --- src/CMakeFiles/openbabel.dir/descriptor.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/descriptor.o -c /construction/science/openbabel/openbabel-2.4.1/src/descriptor.cpp --- src/CMakeFiles/openbabel.dir/fingerprint.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/fingerprint.o -c /construction/science/openbabel/openbabel-2.4.1/src/fingerprint.cpp --- src/CMakeFiles/openbabel.dir/forcefield.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/forcefield.o -c /construction/science/openbabel/openbabel-2.4.1/src/forcefield.cpp --- src/CMakeFiles/openbabel.dir/format.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/format.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/format.o -c /construction/science/openbabel/openbabel-2.4.1/src/format.cpp --- src/CMakeFiles/openbabel.dir/generic.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/generic.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/generic.o -c /construction/science/openbabel/openbabel-2.4.1/src/generic.cpp --- src/CMakeFiles/openbabel.dir/graphsym.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/graphsym.o -c /construction/science/openbabel/openbabel-2.4.1/src/graphsym.cpp --- src/CMakeFiles/openbabel.dir/grid.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/grid.o -c /construction/science/openbabel/openbabel-2.4.1/src/grid.cpp --- src/CMakeFiles/openbabel.dir/griddata.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/griddata.o -c /construction/science/openbabel/openbabel-2.4.1/src/griddata.cpp --- src/CMakeFiles/openbabel.dir/isomorphism.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/isomorphism.o -c /construction/science/openbabel/openbabel-2.4.1/src/isomorphism.cpp --- src/CMakeFiles/openbabel.dir/kekulize.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/kekulize.o -c /construction/science/openbabel/openbabel-2.4.1/src/kekulize.cpp --- src/CMakeFiles/openbabel.dir/locale.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/locale.o -c /construction/science/openbabel/openbabel-2.4.1/src/locale.cpp --- src/CMakeFiles/openbabel.dir/matrix.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/matrix.o -c /construction/science/openbabel/openbabel-2.4.1/src/matrix.cpp --- src/CMakeFiles/openbabel.dir/mcdlutil.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/mcdlutil.o -c /construction/science/openbabel/openbabel-2.4.1/src/mcdlutil.cpp --- src/CMakeFiles/openbabel.dir/molchrg.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/molchrg.o -c /construction/science/openbabel/openbabel-2.4.1/src/molchrg.cpp --- src/CMakeFiles/openbabel.dir/mol.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/mol.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/mol.o -c /construction/science/openbabel/openbabel-2.4.1/src/mol.cpp --- src/CMakeFiles/openbabel.dir/obconversion.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obconversion.o -c /construction/science/openbabel/openbabel-2.4.1/src/obconversion.cpp --- src/CMakeFiles/openbabel.dir/oberror.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/oberror.o -c /construction/science/openbabel/openbabel-2.4.1/src/oberror.cpp --- src/CMakeFiles/openbabel.dir/obiter.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obiter.o -c /construction/science/openbabel/openbabel-2.4.1/src/obiter.cpp --- src/CMakeFiles/openbabel.dir/obutil.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obutil.o -c /construction/science/openbabel/openbabel-2.4.1/src/obutil.cpp --- src/CMakeFiles/openbabel.dir/op.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/op.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/op.o -c /construction/science/openbabel/openbabel-2.4.1/src/op.cpp --- src/CMakeFiles/openbabel.dir/parsmart.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/parsmart.o -c /construction/science/openbabel/openbabel-2.4.1/src/parsmart.cpp --- src/CMakeFiles/openbabel.dir/patty.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/patty.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/patty.o -c /construction/science/openbabel/openbabel-2.4.1/src/patty.cpp --- src/CMakeFiles/openbabel.dir/phmodel.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/phmodel.o -c /construction/science/openbabel/openbabel-2.4.1/src/phmodel.cpp --- src/CMakeFiles/openbabel.dir/plugin.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/plugin.o -c /construction/science/openbabel/openbabel-2.4.1/src/plugin.cpp --- src/CMakeFiles/openbabel.dir/pointgroup.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/pointgroup.o -c /construction/science/openbabel/openbabel-2.4.1/src/pointgroup.cpp --- src/CMakeFiles/openbabel.dir/query.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/query.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/query.o -c /construction/science/openbabel/openbabel-2.4.1/src/query.cpp --- src/CMakeFiles/openbabel.dir/rand.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/rand.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rand.o -c /construction/science/openbabel/openbabel-2.4.1/src/rand.cpp --- src/CMakeFiles/openbabel.dir/residue.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/residue.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/residue.o -c /construction/science/openbabel/openbabel-2.4.1/src/residue.cpp --- src/CMakeFiles/openbabel.dir/ring.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/ring.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/ring.o -c /construction/science/openbabel/openbabel-2.4.1/src/ring.cpp --- src/CMakeFiles/openbabel.dir/rotamer.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rotamer.o -c /construction/science/openbabel/openbabel-2.4.1/src/rotamer.cpp --- src/CMakeFiles/openbabel.dir/rotor.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rotor.o -c /construction/science/openbabel/openbabel-2.4.1/src/rotor.cpp --- src/CMakeFiles/openbabel.dir/spectrophore.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/spectrophore.o -c /construction/science/openbabel/openbabel-2.4.1/src/spectrophore.cpp --- src/CMakeFiles/openbabel.dir/tautomer.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/tautomer.o -c /construction/science/openbabel/openbabel-2.4.1/src/tautomer.cpp --- src/CMakeFiles/openbabel.dir/tokenst.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/tokenst.o -c /construction/science/openbabel/openbabel-2.4.1/src/tokenst.cpp --- src/CMakeFiles/openbabel.dir/transform.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/transform.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/transform.o -c /construction/science/openbabel/openbabel-2.4.1/src/transform.cpp --- src/CMakeFiles/openbabel.dir/typer.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/typer.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/typer.o -c /construction/science/openbabel/openbabel-2.4.1/src/typer.cpp --- src/CMakeFiles/openbabel.dir/obmolecformat.o --- --- src/CMakeFiles/openbabel.dir/conformersearch.o --- --- src/CMakeFiles/openbabel.dir/obmolecformat.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obmolecformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/obmolecformat.cpp --- src/CMakeFiles/openbabel.dir/conformersearch.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/conformersearch.o -c /construction/science/openbabel/openbabel-2.4.1/src/conformersearch.cpp --- src/CMakeFiles/openbabel.dir/confsearch.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/confsearch.o -c /construction/science/openbabel/openbabel-2.4.1/src/confsearch.cpp --- src/CMakeFiles/openbabel.dir/distgeom.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/distgeom.o -c /construction/science/openbabel/openbabel-2.4.1/src/distgeom.cpp --- src/CMakeFiles/openbabel.dir/dlhandler_unix.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/dlhandler_unix.o -c /construction/science/openbabel/openbabel-2.4.1/src/dlhandler_unix.cpp --- src/CMakeFiles/openbabel.dir/depict/depict.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/depict/depict.o -c /construction/science/openbabel/openbabel-2.4.1/src/depict/depict.cpp --- src/CMakeFiles/openbabel.dir/depict/svgpainter.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/depict/svgpainter.o -c /construction/science/openbabel/openbabel-2.4.1/src/depict/svgpainter.cpp --- src/CMakeFiles/openbabel.dir/math/matrix3x3.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/matrix3x3.o -c /construction/science/openbabel/openbabel-2.4.1/src/math/matrix3x3.cpp --- src/CMakeFiles/openbabel.dir/math/spacegroup.o --- --- src/CMakeFiles/openbabel.dir/math/transform3d.o --- --- src/CMakeFiles/openbabel.dir/math/spacegroup.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/spacegroup.o -c /construction/science/openbabel/openbabel-2.4.1/src/math/spacegroup.cpp --- src/CMakeFiles/openbabel.dir/math/transform3d.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/transform3d.o -c /construction/science/openbabel/openbabel-2.4.1/src/math/transform3d.cpp --- src/CMakeFiles/openbabel.dir/math/vector3.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/vector3.o -c /construction/science/openbabel/openbabel-2.4.1/src/math/vector3.cpp --- src/CMakeFiles/openbabel.dir/math/align.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/align.o -c /construction/science/openbabel/openbabel-2.4.1/src/math/align.cpp --- src/CMakeFiles/openbabel.dir/stereo/stereo.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/stereo.o -c /construction/science/openbabel/openbabel-2.4.1/src/stereo/stereo.cpp --- src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.o -c /construction/science/openbabel/openbabel-2.4.1/src/stereo/tetranonplanar.cpp --- src/CMakeFiles/openbabel.dir/stereo/tetraplanar.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetraplanar.o -c /construction/science/openbabel/openbabel-2.4.1/src/stereo/tetraplanar.cpp --- src/CMakeFiles/openbabel.dir/stereo/squareplanar.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/squareplanar.o -c /construction/science/openbabel/openbabel-2.4.1/src/stereo/squareplanar.cpp --- src/CMakeFiles/openbabel.dir/stereo/cistrans.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/cistrans.o -c /construction/science/openbabel/openbabel-2.4.1/src/stereo/cistrans.cpp --- src/CMakeFiles/openbabel.dir/stereo/tetrahedral.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetrahedral.o -c /construction/science/openbabel/openbabel-2.4.1/src/stereo/tetrahedral.cpp --- src/CMakeFiles/openbabel.dir/stereo/perception.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/perception.o -c /construction/science/openbabel/openbabel-2.4.1/src/stereo/perception.cpp --- src/CMakeFiles/openbabel.dir/stereo/facade.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/facade.o -c /construction/science/openbabel/openbabel-2.4.1/src/stereo/facade.cpp --- src/CMakeFiles/openbabel.dir/stereo/perception.o --- /construction/science/openbabel/openbabel-2.4.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref)': /construction/science/openbabel/openbabel-2.4.1/src/stereo/perception.cpp:2871:16: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); ^ In file included from /usr/include/c++/5.0/bits/stl_function.h:1128:0, from /usr/include/c++/5.0/bits/stl_tree.h:65, from /usr/include/c++/5.0/map:60, from /construction/science/openbabel/openbabel-2.4.1/include/openbabel/base.h:26, from /construction/science/openbabel/openbabel-2.4.1/include/openbabel/stereo/stereo.h:27, from /construction/science/openbabel/openbabel-2.4.1/include/openbabel/stereo/tetranonplanar.h:27, from /construction/science/openbabel/openbabel-2.4.1/include/openbabel/stereo/tetrahedral.h:27, from /construction/science/openbabel/openbabel-2.4.1/src/stereo/perception.cpp:25: /usr/include/c++/5.0/backward/binders.h:108:11: note: declared here class binder1st ^ /construction/science/openbabel/openbabel-2.4.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref, OpenBabel::OBStereo::Ref)': /construction/science/openbabel/openbabel-2.4.1/src/stereo/perception.cpp:2903:16: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); ^ In file included from /usr/include/c++/5.0/bits/stl_function.h:1128:0, from /usr/include/c++/5.0/bits/stl_tree.h:65, from /usr/include/c++/5.0/map:60, from /construction/science/openbabel/openbabel-2.4.1/include/openbabel/base.h:26, from /construction/science/openbabel/openbabel-2.4.1/include/openbabel/stereo/stereo.h:27, from /construction/science/openbabel/openbabel-2.4.1/include/openbabel/stereo/tetranonplanar.h:27, from /construction/science/openbabel/openbabel-2.4.1/include/openbabel/stereo/tetrahedral.h:27, from /construction/science/openbabel/openbabel-2.4.1/src/stereo/perception.cpp:25: /usr/include/c++/5.0/backward/binders.h:108:11: note: declared here class binder1st ^ --- lib/libopenbabel.so.5.0.0 --- [ 17%] Linking CXX shared library ../lib/libopenbabel.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -Wl,-soname,libopenbabel.so.5 -o ../lib/libopenbabel.so.5.0.0 CMakeFiles/openbabel.dir/alias.o CMakeFiles/openbabel.dir/atom.o CMakeFiles/openbabel.dir/base.o CMakeFiles/openbabel.dir/bitvec.o CMakeFiles/openbabel.dir/bond.o CMakeFiles/openbabel.dir/bondtyper.o CMakeFiles/openbabel.dir/builder.o CMakeFiles/openbabel.dir/canon.o CMakeFiles/openbabel.dir/chains.o CMakeFiles/openbabel.dir/chargemodel.o CMakeFiles/openbabel.dir/chiral.o CMakeFiles/openbabel.dir/data.o CMakeFiles/openbabel.dir/data_utilities.o CMakeFiles/openbabel.dir/descriptor.o CMakeFiles/openbabel.dir/fingerprint.o CMakeFiles/openbabel.dir/forcefield.o CMakeFiles/openbabel.dir/format.o CMakeFiles/openbabel.dir/generic.o CMakeFiles/openbabel.dir/graphsym.o CMakeFiles/openbabel.dir/grid.o CMakeFiles/openbabel.dir/griddata.o CMakeFiles/openbabel.dir/isomorphism.o CMakeFiles/openbabel.dir/kekulize.o CMakeFiles/openbabel.dir/locale.o CMakeFiles/openbabel.dir/matrix.o CMakeFiles/openbabel.dir/mcdlutil.o CMakeFiles/openbabel.dir/molchrg.o CMakeFiles/openbabel.dir/mol.o CMakeFiles/openbabel.dir/obconversion.o CMakeFiles/openbabel.dir/oberror.o CMakeFiles/openbabel.dir/obiter.o CMakeFiles/openbabel.dir/obutil.o CMakeFiles/openbabel.dir/op.o CMakeFiles/openbabel.dir/parsmart.o CMakeFiles/openbabel.dir/patty.o CMakeFiles/openbabel.dir/phmodel.o CMakeFiles/openbabel.dir/plugin.o CMakeFiles/openbabel.dir/pointgroup.o CMakeFiles/openbabel.dir/query.o CMakeFiles/openbabel.dir/rand.o CMakeFiles/openbabel.dir/residue.o CMakeFiles/openbabel.dir/ring.o CMakeFiles/openbabel.dir/rotamer.o CMakeFiles/openbabel.dir/rotor.o CMakeFiles/openbabel.dir/spectrophore.o CMakeFiles/openbabel.dir/tautomer.o CMakeFiles/openbabel.dir/tokenst.o CMakeFiles/openbabel.dir/transform.o CMakeFiles/openbabel.dir/typer.o CMakeFiles/openbabel.dir/obmolecformat.o CMakeFiles/openbabel.dir/conformersearch.o CMakeFiles/openbabel.dir/confsearch.o CMakeFiles/openbabel.dir/distgeom.o CMakeFiles/openbabel.dir/dlhandler_unix.o CMakeFiles/openbabel.dir/depict/depict.o CMakeFiles/openbabel.dir/depict/svgpainter.o CMakeFiles/openbabel.dir/math/matrix3x3.o CMakeFiles/openbabel.dir/math/spacegroup.o CMakeFiles/openbabel.dir/math/transform3d.o CMakeFiles/openbabel.dir/math/vector3.o CMakeFiles/openbabel.dir/math/align.o CMakeFiles/openbabel.dir/stereo/stereo.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.o CMakeFiles/openbabel.dir/stereo/tetraplanar.o CMakeFiles/openbabel.dir/stereo/squareplanar.o CMakeFiles/openbabel.dir/stereo/cistrans.o CMakeFiles/openbabel.dir/stereo/tetrahedral.o CMakeFiles/openbabel.dir/stereo/perception.o CMakeFiles/openbabel.dir/stereo/facade.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib -lm -ldl -lz cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_symlink_library ../lib/libopenbabel.so.5.0.0 ../lib/libopenbabel.so.5 ../lib/libopenbabel.so [ 17%] Built target openbabel --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend --- src/CMakeFiles/plugin_forcefields.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend --- src/CMakeFiles/plugin_descriptors.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend --- src/CMakeFiles/plugin_ops.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend --- src/CMakeFiles/plugin_charges.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake Scanning dependencies of target plugin_fingerprints /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build --- src/CMakeFiles/plugin_forcefields.dir/all --- Scanning dependencies of target plugin_forcefields --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o --- --- src/CMakeFiles/plugin_descriptors.dir/all --- Scanning dependencies of target plugin_descriptors /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build --- src/CMakeFiles/plugin_forcefields.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build --- src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o --- --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o --- --- src/CMakeFiles/plugin_fingerprints.dir/all --- [ 17%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o --- src/CMakeFiles/plugin_forcefields.dir/all --- [ 17%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o --- src/CMakeFiles/plugin_fingerprints.dir/all --- cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o -c /construction/science/openbabel/openbabel-2.4.1/src/fingerprints/finger2.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o -c /construction/science/openbabel/openbabel-2.4.1/src/forcefields/forcefieldgaff.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- [ 17%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o -c /construction/science/openbabel/openbabel-2.4.1/src/descriptors/cansmidescriptor.cpp --- src/CMakeFiles/plugin_ops.dir/all --- Scanning dependencies of target plugin_ops /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build --- src/CMakeFiles/plugin_ops.dir/ops/addfilename.o --- [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addfilename.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/addfilename.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake Scanning dependencies of target plugin_charges /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build --- src/CMakeFiles/plugin_charges.dir/charges/eem.o --- [ 18%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC 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-std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o -c /construction/science/openbabel/openbabel-2.4.1/src/forcefields/forcefieldghemical.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/none.o --- [ 19%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/none.o -c /construction/science/openbabel/openbabel-2.4.1/src/charges/none.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/canonical.o --- [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 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-fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -c /construction/science/openbabel/openbabel-2.4.1/src/descriptors/smartsdescriptors.cpp --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o --- [ 19%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o -c /construction/science/openbabel/openbabel-2.4.1/src/fingerprints/fingerecfp.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/changecell.o --- [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/changecell.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/changecell.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- --- lib/plugin_descriptors.so --- [ 20%] Linking CXX shared module ../lib/plugin_descriptors.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../lib/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 20%] Built target plugin_descriptors --- src/formats/CMakeFiles/pubchem.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend --- src/formats/CMakeFiles/pubchem.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake Scanning dependencies of target pubchem /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build --- src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o --- [ 20%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchem.dir/xml/pubchem.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/pubchem.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o --- [ 20%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o -c /construction/science/openbabel/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/mmff94.o --- [ 20%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/mmff94.o -c /construction/science/openbabel/openbabel-2.4.1/src/charges/mmff94.cpp --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- lib/plugin_fingerprints.so --- [ 20%] Linking CXX shared module ../lib/plugin_fingerprints.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../lib/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 21%] Built target plugin_fingerprints --- src/formats/CMakeFiles/cdxmlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend --- src/formats/CMakeFiles/cdxmlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake Scanning dependencies of target cdxmlformat /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build --- src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o --- [ 21%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/cdxmlformat.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/fromfile.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/fromfile.o -c /construction/science/openbabel/openbabel-2.4.1/src/charges/fromfile.cpp --- src/formats/CMakeFiles/pubchem.dir/all --- --- src/formats/CMakeFiles/pubchem.dir/xml/xml.o --- [ 21%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchem.dir/xml/xml.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/xml.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/delpolarh.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/delpolarh.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/delpolarh.cpp --- src/formats/CMakeFiles/cdxmlformat.dir/all --- --- src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.o --- [ 21%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/cdxmlformat.dir/xml/xml.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/xml.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/eqeq.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/eqeq.o -c /construction/science/openbabel/openbabel-2.4.1/src/charges/eqeq.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o --- [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/delnonpolarh.cpp --- src/formats/CMakeFiles/cdxmlformat.dir/all --- --- lib/cdxmlformat.so --- [ 22%] Linking CXX shared module ../../lib/cdxmlformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o CMakeFiles/cdxmlformat.dir/xml/xml.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 23%] Built target cdxmlformat --- src/formats/CMakeFiles/chemkinformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend --- src/formats/CMakeFiles/chemkinformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake Scanning dependencies of target chemkinformat /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build --- src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o --- [ 23%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemkinformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/chemkinformat.dir/chemkinformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/chemkinformat.cpp --- src/formats/CMakeFiles/pubchem.dir/all --- --- lib/pubchem.so --- [ 23%] Linking CXX shared module ../../lib/pubchem.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.o CMakeFiles/pubchem.dir/xml/xml.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 23%] Built target pubchem --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend --- src/formats/CMakeFiles/chemdrawcdx.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake Scanning dependencies of target chemdrawcdx /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build --- src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o --- [ 23%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawcdx_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/chemdrawcdx.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o --- --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/gen2D.o --- [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/gen2D.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/gen2D.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- [ 23%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -c /construction/science/openbabel/openbabel-2.4.1/src/forcefields/forcefielduff.cpp --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- --- lib/chemdrawcdx.so --- [ 23%] Linking CXX shared module ../../lib/chemdrawcdx.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 23%] Built target chemdrawcdx --- src/formats/CMakeFiles/cmlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend --- src/formats/CMakeFiles/cmlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake Scanning dependencies of target cmlformat /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build --- src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.o --- [ 23%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlformat.dir/xml/cmlformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/cmlformat.cpp --- src/formats/CMakeFiles/chemkinformat.dir/all --- --- lib/chemkinformat.so --- [ 23%] Linking CXX shared module ../../lib/chemkinformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 23%] Built target chemkinformat --- src/formats/CMakeFiles/rxnformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend --- src/formats/CMakeFiles/rxnformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake Scanning dependencies of target rxnformat /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build --- src/formats/CMakeFiles/rxnformat.dir/rxnformat.o --- [ 24%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/rxnformat.dir/rxnformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/rxnformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/fillUC.o --- [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/fillUC.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/fillUC.cpp --- src/formats/CMakeFiles/rxnformat.dir/all --- --- lib/rxnformat.so --- [ 24%] Linking CXX shared module ../../lib/rxnformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 24%] Built target rxnformat --- src/formats/CMakeFiles/xyzformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend --- src/formats/CMakeFiles/xyzformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake Scanning dependencies of target xyzformat /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build --- src/formats/CMakeFiles/xyzformat.dir/xyzformat.o --- [ 24%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/xyzformat.dir/xyzformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xyzformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/forcefield.o --- [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/forcefield.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/forcefield.cpp --- src/formats/CMakeFiles/xyzformat.dir/all --- --- lib/xyzformat.so --- [ 24%] Linking CXX shared module ../../lib/xyzformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 25%] Built target xyzformat --- src/formats/CMakeFiles/xedformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend --- src/formats/CMakeFiles/xedformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake Scanning dependencies of target xedformat /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build --- src/formats/CMakeFiles/xedformat.dir/xedformat.o --- [ 25%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/xedformat.dir/xedformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xedformat.cpp --- src/formats/CMakeFiles/cmlformat.dir/all --- --- src/formats/CMakeFiles/cmlformat.dir/xml/xml.o --- [ 25%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlformat.dir/xml/xml.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/xml.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/qeq.o --- --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/gen3d.o --- [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.o --- src/CMakeFiles/plugin_charges.dir/all --- [ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/qeq.o -c /construction/science/openbabel/openbabel-2.4.1/src/charges/qeq.cpp --- src/CMakeFiles/plugin_ops.dir/all --- cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/gen3d.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/gen3d.cpp --- src/formats/CMakeFiles/xedformat.dir/all --- --- lib/xedformat.so --- [ 25%] Linking CXX shared module ../../lib/xedformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/xedformat.so CMakeFiles/xedformat.dir/xedformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 25%] Built target xedformat --- src/formats/CMakeFiles/unichemformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend --- src/formats/CMakeFiles/unichemformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake Scanning dependencies of target unichemformat /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build --- src/formats/CMakeFiles/unichemformat.dir/unichemformat.o --- [ 25%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/unichemformat.dir/unichemformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/unichemformat.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- --- lib/plugin_forcefields.so --- [ 25%] Linking CXX shared module ../lib/plugin_forcefields.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../lib/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 25%] Built target plugin_forcefields --- src/formats/CMakeFiles/thermoformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend --- src/formats/CMakeFiles/thermoformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake Scanning dependencies of target thermoformat /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build --- src/formats/CMakeFiles/thermoformat.dir/thermoformat.o --- [ 26%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/thermoformat.dir/thermoformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/thermoformat.cpp --- src/formats/CMakeFiles/cmlformat.dir/all --- --- lib/cmlformat.so --- [ 27%] Linking CXX shared module ../../lib/cmlformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.o CMakeFiles/cmlformat.dir/xml/xml.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 27%] Built target cmlformat --- src/formats/CMakeFiles/smileyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend --- src/formats/CMakeFiles/smileyformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake Scanning dependencies of target smileyformat /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build --- src/formats/CMakeFiles/smileyformat.dir/smileyformat.o --- [ 27%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/smileyformat.dir/smileyformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/smileyformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/largest.o --- [ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/largest.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/largest.cpp --- src/formats/CMakeFiles/unichemformat.dir/all --- --- lib/unichemformat.so --- [ 28%] Linking CXX shared module ../../lib/unichemformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 28%] Built target unichemformat --- src/formats/CMakeFiles/shelxformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend --- src/formats/CMakeFiles/shelxformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake Scanning dependencies of target shelxformat /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build --- src/formats/CMakeFiles/shelxformat.dir/shelxformat.o --- [ 28%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/shelxformat.dir/shelxformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/shelxformat.cpp --- src/formats/CMakeFiles/thermoformat.dir/all --- --- lib/thermoformat.so --- [ 28%] Linking CXX shared module ../../lib/thermoformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/loader.o --- [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/loader.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/loader.cpp --- src/formats/CMakeFiles/thermoformat.dir/all --- [ 29%] Built target thermoformat --- src/formats/CMakeFiles/jaguarformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend --- src/formats/CMakeFiles/jaguarformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake Scanning dependencies of target jaguarformat /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build --- src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o --- [ 29%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Djaguarformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/jaguarformat.dir/jaguarformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/jaguarformat.cpp --- src/formats/CMakeFiles/smileyformat.dir/all --- --- lib/smileyformat.so --- [ 29%] Linking CXX shared module ../../lib/smileyformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 30%] Built target smileyformat --- src/formats/CMakeFiles/abinitformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend --- src/formats/CMakeFiles/abinitformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake Scanning dependencies of target abinitformat /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build --- src/formats/CMakeFiles/abinitformat.dir/abinitformat.o --- [ 30%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/abinitformat.dir/abinitformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/abinitformat.cpp --- src/formats/CMakeFiles/shelxformat.dir/all --- --- lib/shelxformat.so --- [ 30%] Linking CXX shared module ../../lib/shelxformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 30%] Built target shelxformat --- src/formats/CMakeFiles/exyzformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend --- src/formats/CMakeFiles/exyzformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake Scanning dependencies of target exyzformat /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build --- src/formats/CMakeFiles/exyzformat.dir/exyzformat.o --- [ 30%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/exyzformat.dir/exyzformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/exyzformat.cpp --- src/formats/CMakeFiles/jaguarformat.dir/all --- --- lib/jaguarformat.so --- [ 30%] Linking CXX shared module ../../lib/jaguarformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 30%] Built target jaguarformat --- src/formats/CMakeFiles/gausscubeformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend --- src/formats/CMakeFiles/gausscubeformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake Scanning dependencies of target gausscubeformat /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build --- src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o --- [ 31%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/gausscubeformat.dir/gausscubeformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/gausscubeformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opsplit.o --- [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opsplit.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/opsplit.cpp --- src/formats/CMakeFiles/abinitformat.dir/all --- --- lib/abinitformat.so --- [ 31%] Linking CXX shared module ../../lib/abinitformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 31%] Built target abinitformat --- src/formats/CMakeFiles/gamessformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend --- src/formats/CMakeFiles/gamessformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake Scanning dependencies of target gamessformat /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build --- src/formats/CMakeFiles/gamessformat.dir/gamessformat.o --- [ 32%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/gamessformat.dir/gamessformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/gamessformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/optransform.o --- [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/optransform.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/optransform.cpp --- src/formats/CMakeFiles/exyzformat.dir/all --- --- lib/exyzformat.so --- [ 32%] Linking CXX shared module ../../lib/exyzformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 32%] Built target exyzformat --- src/formats/CMakeFiles/tinkerformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend --- src/formats/CMakeFiles/tinkerformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake Scanning dependencies of target tinkerformat /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build --- src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o --- [ 32%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ 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cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 32%] Built target gausscubeformat --- src/formats/CMakeFiles/dmolformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend --- src/formats/CMakeFiles/dmolformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake Scanning dependencies of target dmolformat /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build --- src/formats/CMakeFiles/dmolformat.dir/dmolformat.o --- [ 33%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/dmolformat.dir/dmolformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/dmolformat.cpp --- lib/dmolformat.so --- [ 33%] Linking CXX shared module ../../lib/dmolformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 33%] Built target dmolformat --- src/formats/CMakeFiles/xmlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend --- src/formats/CMakeFiles/xmlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake Scanning dependencies of target xmlformat /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build --- src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o --- [ 33%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/xmlformat.dir/xml/xmlformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/xmlformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o --- [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/partialcharges.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/partialcharges.cpp --- src/formats/CMakeFiles/tinkerformat.dir/all --- --- lib/tinkerformat.so --- [ 33%] Linking CXX shared module ../../lib/tinkerformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 33%] Built target tinkerformat --- src/formats/CMakeFiles/daltonformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend --- src/formats/CMakeFiles/daltonformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake Scanning dependencies of target daltonformat /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build --- src/formats/CMakeFiles/daltonformat.dir/daltonformat.o --- [ 33%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/daltonformat.dir/daltonformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/daltonformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/readconformers.o --- [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/readconformers.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/readconformers.cpp --- src/formats/CMakeFiles/daltonformat.dir/all --- --- lib/daltonformat.so --- [ 33%] Linking CXX shared module ../../lib/daltonformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 33%] Built target daltonformat --- src/formats/CMakeFiles/pubchemjsonformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend --- src/formats/CMakeFiles/pubchemjsonformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake Scanning dependencies of target pubchemjsonformat /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build --- src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.o --- [ 34%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/json/pubchemjsonformat.cpp --- src/formats/CMakeFiles/xmlformat.dir/all --- --- src/formats/CMakeFiles/xmlformat.dir/xml/xml.o --- [ 34%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/xmlformat.dir/xml/xml.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/xml.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/sort.o --- [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/sort.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/sort.cpp --- src/formats/CMakeFiles/gamessformat.dir/all --- --- lib/gamessformat.so --- [ 34%] Linking CXX shared module ../../lib/gamessformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 34%] Built target gamessformat --- src/formats/CMakeFiles/hinformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend --- src/formats/CMakeFiles/hinformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake Scanning dependencies of target hinformat /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build --- src/formats/CMakeFiles/hinformat.dir/hinformat.o --- [ 34%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/hinformat.dir/hinformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/hinformat.cpp --- src/formats/CMakeFiles/xmlformat.dir/all --- --- lib/xmlformat.so --- [ 35%] Linking CXX shared module ../../lib/xmlformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.o CMakeFiles/xmlformat.dir/xml/xml.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 35%] Built target xmlformat --- src/formats/CMakeFiles/molreport.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend --- src/formats/CMakeFiles/molreport.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake Scanning dependencies of target molreport /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build --- src/formats/CMakeFiles/molreport.dir/molreport.o --- [ 35%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/molreport.dir/molreport.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/molreport.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/qtpie.o --- [ 35%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/qtpie.o -c /construction/science/openbabel/openbabel-2.4.1/src/charges/qtpie.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o --- [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opisomorph.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/opisomorph.cpp --- src/formats/CMakeFiles/pubchemjsonformat.dir/all --- --- src/formats/CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.o --- [ 35%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/json/jsoncpp.cpp --- src/formats/CMakeFiles/molreport.dir/all --- --- lib/molreport.so --- [ 35%] Linking CXX shared module ../../lib/molreport.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/molreport.so CMakeFiles/molreport.dir/molreport.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 35%] Built target molreport --- src/formats/CMakeFiles/cmlreactformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend --- src/formats/CMakeFiles/cmlreactformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake Scanning dependencies of target cmlreactformat /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build --- src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o --- [ 35%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp --- src/formats/CMakeFiles/hinformat.dir/all --- --- lib/hinformat.so --- [ 35%] Linking CXX shared module ../../lib/hinformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/hinformat.so CMakeFiles/hinformat.dir/hinformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 35%] Built target hinformat --- src/formats/CMakeFiles/castepformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend --- src/formats/CMakeFiles/castepformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake Scanning dependencies of target castepformat /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build --- src/formats/CMakeFiles/castepformat.dir/castepformat.o --- [ 35%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/castepformat.dir/castepformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/castepformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o --- [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/ophighlight.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/ophighlight.cpp --- src/formats/CMakeFiles/castepformat.dir/all --- --- lib/castepformat.so --- [ 36%] Linking CXX shared module ../../lib/castepformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/castepformat.so CMakeFiles/castepformat.dir/castepformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 37%] Built target castepformat --- src/formats/CMakeFiles/lpmdformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend --- src/formats/CMakeFiles/lpmdformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake Scanning dependencies of target lpmdformat /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build --- src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.o --- [ 37%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/lpmdformat.dir/lpmdformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/lpmdformat.cpp --- src/formats/CMakeFiles/pubchemjsonformat.dir/all --- --- src/formats/CMakeFiles/pubchemjsonformat.dir/json/customwriter.o --- [ 37%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/customwriter.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchemjsonformat.dir/json/customwriter.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/json/customwriter.cpp --- lib/pubchemjsonformat.so --- [ 37%] Linking CXX shared module ../../lib/pubchemjsonformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pubchemjsonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/pubchemjsonformat.so CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.o CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.o CMakeFiles/pubchemjsonformat.dir/json/customwriter.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 37%] Built target pubchemjsonformat --- src/formats/CMakeFiles/APIInterface.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend --- src/formats/CMakeFiles/APIInterface.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake Scanning dependencies of target APIInterface /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build --- src/formats/CMakeFiles/APIInterface.dir/APIInterface.o --- [ 37%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/APIInterface.dir/APIInterface.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/APIInterface.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/xout.o --- [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/xout.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/xout.cpp --- src/formats/CMakeFiles/cmlreactformat.dir/all --- --- src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o --- [ 37%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlreactformat.dir/xml/xml.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xml/xml.cpp --- src/formats/CMakeFiles/APIInterface.dir/all --- --- lib/APIInterface.so --- [ 37%] Linking CXX shared module ../../lib/APIInterface.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 37%] Built target APIInterface --- src/formats/CMakeFiles/nwchemformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend --- src/formats/CMakeFiles/nwchemformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake Scanning dependencies of target nwchemformat /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build --- src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o --- [ 37%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnwchemformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/nwchemformat.dir/nwchemformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/nwchemformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/conformer.o --- [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/conformer.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/conformer.cpp --- src/formats/CMakeFiles/lpmdformat.dir/all --- --- lib/lpmdformat.so --- [ 37%] Linking CXX shared module ../../lib/lpmdformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/cmlreactformat.dir/all --- --- lib/cmlreactformat.so --- [ 37%] Linking CXX shared module ../../lib/cmlreactformat.so --- src/formats/CMakeFiles/lpmdformat.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/cmlreactformat.dir/all --- cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o CMakeFiles/cmlreactformat.dir/xml/xml.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/lpmdformat.dir/all --- [ 37%] Built target lpmdformat --- src/formats/CMakeFiles/mdlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend --- src/formats/CMakeFiles/mdlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake Scanning dependencies of target mdlformat /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build --- src/formats/CMakeFiles/cmlreactformat.dir/all --- [ 37%] Built target cmlreactformat --- src/formats/CMakeFiles/mdlformat.dir/all --- --- src/formats/CMakeFiles/mdlformat.dir/mdlformat.o --- --- src/formats/CMakeFiles/mopacformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend --- src/formats/CMakeFiles/mopacformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/mdlformat.dir/all --- [ 37%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/mdlformat.dir/mdlformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/mdlformat.cpp --- src/formats/CMakeFiles/mopacformat.dir/all --- Scanning dependencies of target mopacformat /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build --- src/formats/CMakeFiles/mopacformat.dir/mopacformat.o --- [ 37%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/mopacformat.dir/mopacformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/mopacformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opalign.o --- [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opalign.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/opalign.cpp --- src/formats/CMakeFiles/nwchemformat.dir/all --- --- lib/nwchemformat.so --- [ 37%] Linking CXX shared module ../../lib/nwchemformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 37%] Built target nwchemformat --- src/formats/CMakeFiles/gausszmatformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend --- src/formats/CMakeFiles/gausszmatformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake Scanning dependencies of target gausszmatformat /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build --- src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o --- [ 37%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/gausszmatformat.dir/gausszmatformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/gausszmatformat.cpp --- src/formats/CMakeFiles/mopacformat.dir/all --- --- lib/mopacformat.so --- [ 37%] Linking CXX shared module ../../lib/mopacformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 37%] Built target mopacformat --- src/formats/CMakeFiles/fhiaimsformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend --- src/formats/CMakeFiles/fhiaimsformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake Scanning dependencies of target fhiaimsformat /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build --- src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o --- [ 37%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ 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&& /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 38%] Built target gausszmatformat --- src/formats/CMakeFiles/copyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend --- src/formats/CMakeFiles/copyformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake Scanning dependencies of target copyformat /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build --- src/formats/CMakeFiles/copyformat.dir/copyformat.o --- [ 38%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/copyformat.dir/copyformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/copyformat.cpp --- lib/copyformat.so --- [ 38%] Linking CXX shared module ../../lib/copyformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/copyformat.so CMakeFiles/copyformat.dir/copyformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 38%] Built target copyformat --- src/formats/CMakeFiles/turbomoleformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend --- src/formats/CMakeFiles/turbomoleformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake Scanning dependencies of target turbomoleformat /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build --- src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o --- [ 38%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o cd 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lib/plugin_charges.so --- [ 38%] Linking CXX shared module ../lib/plugin_charges.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../lib/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.o CMakeFiles/plugin_charges.dir/charges/gasteiger.o CMakeFiles/plugin_charges.dir/charges/none.o CMakeFiles/plugin_charges.dir/charges/mmff94.o CMakeFiles/plugin_charges.dir/charges/fromfile.o CMakeFiles/plugin_charges.dir/charges/eqeq.o CMakeFiles/plugin_charges.dir/charges/qeq.o CMakeFiles/plugin_charges.dir/charges/qtpie.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 39%] Built target plugin_charges --- src/formats/CMakeFiles/mol2format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend --- src/formats/CMakeFiles/mol2format.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake Scanning dependencies of target mol2format /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build --- src/formats/CMakeFiles/mol2format.dir/mol2format.o --- [ 39%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/mol2format.dir/mol2format.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/mol2format.cpp --- src/formats/CMakeFiles/fhiaimsformat.dir/all --- --- lib/fhiaimsformat.so --- [ 39%] Linking CXX shared module ../../lib/fhiaimsformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 39%] Built target fhiaimsformat --- src/formats/CMakeFiles/amberformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend --- src/formats/CMakeFiles/amberformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake Scanning dependencies of target amberformat /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build --- src/formats/CMakeFiles/amberformat.dir/amberformat.o --- [ 39%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/amberformat.dir/amberformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/amberformat.cpp --- src/formats/CMakeFiles/turbomoleformat.dir/all --- --- lib/turbomoleformat.so --- [ 39%] Linking CXX shared module ../../lib/turbomoleformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 39%] Built target turbomoleformat --- src/formats/CMakeFiles/CSRformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend --- src/formats/CMakeFiles/CSRformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake Scanning dependencies of target CSRformat /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build --- src/formats/CMakeFiles/CSRformat.dir/CSRformat.o --- [ 39%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.o cd /construction/science/openbabel/.build/src/formats && 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/construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake Scanning dependencies of target vaspformat /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build --- src/formats/CMakeFiles/vaspformat.dir/vaspformat.o --- [ 39%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/vaspformat.dir/vaspformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/vaspformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opconfab.o --- [ 39%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opconfab.o -c /construction/science/openbabel/openbabel-2.4.1/src/ops/opconfab.cpp --- src/formats/CMakeFiles/CSRformat.dir/all --- --- lib/CSRformat.so --- [ 39%] Linking CXX shared module ../../lib/CSRformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm 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src/formats/CMakeFiles/aoforceformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake Scanning dependencies of target aoforceformat /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build --- src/formats/CMakeFiles/amberformat.dir/all --- [ 39%] Built target amberformat --- src/formats/CMakeFiles/pdbformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend --- src/formats/CMakeFiles/pdbformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/aoforceformat.dir/all --- --- src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.o --- [ 40%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/aoforceformat.dir/aoforceformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/aoforceformat.cpp --- src/formats/CMakeFiles/pdbformat.dir/all --- Scanning dependencies of target pdbformat /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build --- src/formats/CMakeFiles/pdbformat.dir/pdbformat.o --- [ 40%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS 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CMakeFiles/plugin_ops.dir/ops/ophighlight.o CMakeFiles/plugin_ops.dir/ops/xout.o CMakeFiles/plugin_ops.dir/ops/conformer.o CMakeFiles/plugin_ops.dir/ops/opalign.o CMakeFiles/plugin_ops.dir/ops/opconfab.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 41%] Built target plugin_ops --- src/formats/CMakeFiles/pwscfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend --- src/formats/CMakeFiles/pwscfformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake Scanning 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src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend --- src/formats/CMakeFiles/cssrformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake Scanning dependencies of target cssrformat /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build --- src/formats/CMakeFiles/cssrformat.dir/cssrformat.o --- [ 42%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS 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/construction/science/openbabel/.build/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake Scanning dependencies of target povrayformat /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build --- src/formats/CMakeFiles/povrayformat.dir/povrayformat.o --- [ 42%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/povrayformat.dir/povrayformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/povrayformat.cpp --- src/formats/CMakeFiles/pwscfformat.dir/all --- --- lib/pwscfformat.so --- [ 42%] Linking CXX shared module ../../lib/pwscfformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 43%] Built 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src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp --- src/formats/CMakeFiles/vaspformat.dir/all --- --- lib/vaspformat.so --- [ 43%] Linking CXX shared module ../../lib/vaspformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 43%] Built target vaspformat --- src/formats/CMakeFiles/MNAformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend --- src/formats/CMakeFiles/MNAformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake Scanning dependencies of target MNAformat /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build --- src/formats/CMakeFiles/MNAformat.dir/MNAformat.o --- [ 43%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/MNAformat.dir/MNAformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/MNAformat.cpp --- src/formats/CMakeFiles/cssrformat.dir/all --- --- lib/cssrformat.so --- [ 43%] Linking CXX shared module ../../lib/cssrformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 44%] Built target cssrformat --- src/formats/CMakeFiles/chemdrawct.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend --- src/formats/CMakeFiles/chemdrawct.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake Scanning dependencies of target chemdrawct /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build --- src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o --- [ 44%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdrawct.dir/chemdrawct.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/chemdrawct.cpp --- src/formats/CMakeFiles/pdbformat.dir/all --- --- lib/pdbformat.so --- [ 44%] Linking CXX shared module ../../lib/pdbformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 45%] Built target pdbformat --- src/formats/CMakeFiles/textformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend --- src/formats/CMakeFiles/textformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake Scanning dependencies of target textformat /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build --- src/formats/CMakeFiles/textformat.dir/textformat.o --- [ 45%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtextformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/textformat.dir/textformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/textformat.cpp --- src/formats/CMakeFiles/povrayformat.dir/all --- --- lib/povrayformat.so --- [ 45%] Linking CXX shared module ../../lib/povrayformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 45%] Built target povrayformat --- src/formats/CMakeFiles/fastaformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend --- src/formats/CMakeFiles/fastaformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake Scanning dependencies of target fastaformat /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build --- src/formats/CMakeFiles/fastaformat.dir/fastaformat.o --- [ 46%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/fastaformat.dir/fastaformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/fastaformat.cpp --- src/formats/CMakeFiles/textformat.dir/all --- --- lib/textformat.so --- [ 46%] Linking CXX shared module ../../lib/textformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/textformat.so CMakeFiles/textformat.dir/textformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 46%] Built target textformat --- src/formats/CMakeFiles/fpsformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend --- src/formats/CMakeFiles/fpsformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake Scanning dependencies of target fpsformat /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build --- src/formats/CMakeFiles/fpsformat.dir/fpsformat.o --- [ 46%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/fpsformat.dir/fpsformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/fpsformat.cpp --- src/formats/CMakeFiles/chemdrawct.dir/all --- --- lib/chemdrawct.so --- [ 47%] Linking CXX shared module ../../lib/chemdrawct.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 47%] Built target chemdrawct --- src/formats/CMakeFiles/siestaformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend --- src/formats/CMakeFiles/siestaformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake Scanning dependencies of target siestaformat /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build --- src/formats/CMakeFiles/siestaformat.dir/siestaformat.o --- [ 47%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/siestaformat.dir/siestaformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/siestaformat.cpp --- src/formats/CMakeFiles/chemdoodlejsonformat.dir/all --- --- src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.o --- [ 47%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/json/jsoncpp.cpp --- src/formats/CMakeFiles/fastaformat.dir/all --- --- lib/fastaformat.so --- [ 47%] Linking CXX shared module ../../lib/fastaformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 47%] Built target fastaformat --- src/formats/CMakeFiles/opendxformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend --- src/formats/CMakeFiles/opendxformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake Scanning dependencies of target opendxformat /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build --- src/formats/CMakeFiles/opendxformat.dir/opendxformat.o --- [ 47%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dopendxformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/opendxformat.dir/opendxformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/opendxformat.cpp --- src/formats/CMakeFiles/fpsformat.dir/all --- --- lib/fpsformat.so --- [ 47%] Linking CXX shared module ../../lib/fpsformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 47%] Built target fpsformat --- src/formats/CMakeFiles/viewmolformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend --- src/formats/CMakeFiles/viewmolformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake Scanning dependencies of target viewmolformat /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build --- src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o --- [ 47%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/viewmolformat.dir/viewmolformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/viewmolformat.cpp --- src/formats/CMakeFiles/MNAformat.dir/all --- --- lib/MNAformat.so --- [ 47%] Linking CXX shared module ../../lib/MNAformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 47%] Built target MNAformat --- src/formats/CMakeFiles/siestaformat.dir/all --- --- lib/siestaformat.so --- --- src/formats/CMakeFiles/svgformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend --- src/formats/CMakeFiles/svgformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/siestaformat.dir/all --- [ 48%] Linking CXX shared module ../../lib/siestaformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/svgformat.dir/all --- Scanning dependencies of target svgformat /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build --- src/formats/CMakeFiles/svgformat.dir/svgformat.o --- [ 48%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/svgformat.dir/svgformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/svgformat.cpp --- src/formats/CMakeFiles/siestaformat.dir/all --- [ 48%] Built target siestaformat --- src/formats/CMakeFiles/cacaoformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend --- src/formats/CMakeFiles/cacaoformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake Scanning dependencies of target cacaoformat /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build --- src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o --- [ 48%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/cacaoformat.dir/cacaoformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/cacaoformat.cpp --- src/formats/CMakeFiles/viewmolformat.dir/all --- --- lib/viewmolformat.so --- [ 48%] Linking CXX shared module ../../lib/viewmolformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 49%] Built target viewmolformat --- src/formats/CMakeFiles/xsfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend --- src/formats/CMakeFiles/xsfformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake Scanning dependencies of target xsfformat /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build --- src/formats/CMakeFiles/xsfformat.dir/xsfformat.o --- [ 49%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/xsfformat.dir/xsfformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/xsfformat.cpp --- src/formats/CMakeFiles/opendxformat.dir/all --- --- lib/opendxformat.so --- [ 49%] Linking CXX shared module ../../lib/opendxformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 49%] Built target opendxformat --- src/formats/CMakeFiles/dlpolyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend --- src/formats/CMakeFiles/dlpolyformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake Scanning dependencies of target dlpolyformat /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build --- src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o --- [ 49%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/dlpolyformat.dir/dlpolyformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/dlpolyformat.cpp --- src/formats/CMakeFiles/chemdoodlejsonformat.dir/all --- --- src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.o --- [ 50%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/json/customwriter.cpp --- src/formats/CMakeFiles/cacaoformat.dir/all --- --- lib/cacaoformat.so --- [ 50%] Linking CXX shared module ../../lib/cacaoformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 50%] Built target cacaoformat --- src/formats/CMakeFiles/gromos96format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend --- src/formats/CMakeFiles/gromos96format.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake Scanning dependencies of target gromos96format /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build --- src/formats/CMakeFiles/gromos96format.dir/gromos96format.o --- [ 50%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/gromos96format.dir/gromos96format.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/gromos96format.cpp --- src/formats/CMakeFiles/svgformat.dir/all --- --- lib/svgformat.so --- [ 50%] Linking CXX shared module ../../lib/svgformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/svgformat.so CMakeFiles/svgformat.dir/svgformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 51%] Built target svgformat --- src/formats/CMakeFiles/smilesformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend --- src/formats/CMakeFiles/smilesformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake Scanning dependencies of target smilesformat /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build --- src/formats/CMakeFiles/smilesformat.dir/smilesformat.o --- [ 51%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/smilesformat.dir/smilesformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/smilesformat.cpp --- src/formats/CMakeFiles/chemdoodlejsonformat.dir/all --- --- lib/chemdoodlejsonformat.so --- [ 51%] Linking CXX shared module ../../lib/chemdoodlejsonformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemdoodlejsonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/chemdoodlejsonformat.so CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.o CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.o CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 51%] Built target chemdoodlejsonformat --- src/formats/CMakeFiles/yasaraformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend --- src/formats/CMakeFiles/yasaraformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake Scanning dependencies of target yasaraformat /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build --- src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o --- [ 51%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/yasaraformat.dir/yasaraformat.o -c 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/construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake Scanning dependencies of target reportformat /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build --- src/formats/CMakeFiles/reportformat.dir/reportformat.o --- [ 51%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/reportformat.dir/reportformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/reportformat.cpp --- src/formats/CMakeFiles/gromos96format.dir/all --- --- lib/gromos96format.so --- [ 51%] Linking CXX shared module ../../lib/gromos96format.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 51%] Built target gromos96format --- src/formats/CMakeFiles/bgfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend --- src/formats/CMakeFiles/bgfformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake Scanning dependencies 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src/formats/CMakeFiles/stlformat.dir/depend --- src/formats/CMakeFiles/stlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake Scanning dependencies of target stlformat --- src/formats/CMakeFiles/yasaraformat.dir/all --- --- lib/yasaraformat.so --- [ 52%] Linking CXX shared module ../../lib/yasaraformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/stlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build --- src/formats/CMakeFiles/stlformat.dir/stlformat.o --- [ 52%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/stlformat.dir/stlformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/stlformat.cpp --- src/formats/CMakeFiles/yasaraformat.dir/all --- [ 52%] Built target yasaraformat --- src/formats/CMakeFiles/ghemicalformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend --- src/formats/CMakeFiles/ghemicalformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake Scanning dependencies of target ghemicalformat /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build --- src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o --- [ 52%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/ghemicalformat.dir/ghemicalformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/ghemicalformat.cpp --- src/formats/CMakeFiles/reportformat.dir/all --- --- lib/reportformat.so --- [ 52%] Linking CXX shared module ../../lib/reportformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/reportformat.so CMakeFiles/reportformat.dir/reportformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 52%] Built target reportformat --- src/formats/CMakeFiles/confabreport.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend --- src/formats/CMakeFiles/confabreport.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake Scanning dependencies of target confabreport /usr/bin/make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build --- src/formats/CMakeFiles/confabreport.dir/confabreport.o --- [ 52%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dconfabreport_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/confabreport.dir/confabreport.o -c 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/construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake Scanning dependencies of target msiformat /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build --- src/formats/CMakeFiles/msiformat.dir/msiformat.o --- [ 53%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/msiformat.dir/msiformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/msiformat.cpp --- src/formats/CMakeFiles/ghemicalformat.dir/all --- --- lib/ghemicalformat.so --- [ 53%] Linking CXX shared module ../../lib/ghemicalformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 53%] Built target ghemicalformat --- src/formats/CMakeFiles/nulformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend --- src/formats/CMakeFiles/nulformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake Scanning dependencies of target nulformat /usr/bin/make -f 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-I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/gulpformat.dir/gulpformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/gulpformat.cpp --- src/formats/CMakeFiles/smilesformat.dir/all --- --- lib/smilesformat.so --- [ 54%] Linking CXX shared module ../../lib/smilesformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 54%] Built target smilesformat --- src/formats/CMakeFiles/adfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend --- src/formats/CMakeFiles/adfformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake Scanning dependencies of target adfformat /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build --- src/formats/CMakeFiles/adfformat.dir/adfformat.o --- [ 54%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.o cd 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/construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake Scanning dependencies of target pngformat /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build --- src/formats/CMakeFiles/pngformat.dir/pngformat.o --- [ 54%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpngformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/pngformat.dir/pngformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/pngformat.cpp --- src/formats/CMakeFiles/PQSformat.dir/all --- --- lib/PQSformat.so --- [ 55%] Linking CXX shared module ../../lib/PQSformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 55%] Built target PQSformat --- src/formats/CMakeFiles/acesformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend --- src/formats/CMakeFiles/acesformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake Scanning dependencies of target acesformat /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build --- 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/construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake Scanning dependencies of target qchemformat /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build --- src/formats/CMakeFiles/qchemformat.dir/qchemformat.o --- [ 56%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/qchemformat.dir/qchemformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/qchemformat.cpp --- src/formats/CMakeFiles/confabreport.dir/all --- --- lib/confabreport.so --- [ 57%] Linking CXX shared module ../../lib/confabreport.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/adfformat.dir/all --- --- lib/adfformat.so --- --- src/formats/CMakeFiles/confabreport.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/confabreport.so CMakeFiles/confabreport.dir/confabreport.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/adfformat.dir/all --- [ 57%] Linking CXX shared module ../../lib/adfformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/adfformat.so CMakeFiles/adfformat.dir/adfformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 58%] Built target adfformat --- src/formats/CMakeFiles/titleformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend --- src/formats/CMakeFiles/titleformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/confabreport.dir/all --- [ 58%] Built target confabreport --- src/formats/CMakeFiles/asciiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend --- src/formats/CMakeFiles/titleformat.dir/all --- Scanning dependencies of target titleformat /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build --- src/formats/CMakeFiles/asciiformat.dir/all --- --- src/formats/CMakeFiles/asciiformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/titleformat.dir/all --- --- src/formats/CMakeFiles/titleformat.dir/titleformat.o --- --- src/formats/CMakeFiles/asciiformat.dir/all --- Scanning dependencies of target asciiformat /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build --- src/formats/CMakeFiles/asciiformat.dir/asciiformat.o --- --- src/formats/CMakeFiles/titleformat.dir/all --- [ 59%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/titleformat.dir/titleformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/titleformat.cpp --- src/formats/CMakeFiles/asciiformat.dir/all --- [ 59%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/asciiformat.dir/asciiformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/asciiformat.cpp --- src/formats/CMakeFiles/pngformat.dir/all --- --- lib/pngformat.so --- [ 59%] Linking CXX shared module ../../lib/pngformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/pngformat.so CMakeFiles/pngformat.dir/pngformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 59%] Built target pngformat --- src/formats/CMakeFiles/cccformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend --- src/formats/CMakeFiles/cccformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake Scanning dependencies of target cccformat /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build --- src/formats/CMakeFiles/cccformat.dir/cccformat.o --- [ 59%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcccformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/cccformat.dir/cccformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/cccformat.cpp --- src/formats/CMakeFiles/acesformat.dir/all --- --- lib/acesformat.so --- [ 60%] Linking CXX shared module ../../lib/acesformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/acesformat.so CMakeFiles/acesformat.dir/acesformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 60%] Built target acesformat --- src/formats/CMakeFiles/pointcloudformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend --- src/formats/CMakeFiles/pointcloudformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake Scanning dependencies of target pointcloudformat /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build --- src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.o --- [ 60%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/pointcloudformat.dir/pointcloudformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/pointcloudformat.cpp --- src/formats/CMakeFiles/titleformat.dir/all --- --- lib/titleformat.so --- [ 60%] Linking CXX shared module ../../lib/titleformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/titleformat.so CMakeFiles/titleformat.dir/titleformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 60%] Built target titleformat --- src/formats/CMakeFiles/MCDLformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend --- src/formats/CMakeFiles/MCDLformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake Scanning dependencies of target MCDLformat /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build --- src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.o --- [ 61%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/MCDLformat.dir/MCDLformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/MCDLformat.cpp --- src/formats/CMakeFiles/asciiformat.dir/all --- --- src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o --- [ 61%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC 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src/formats/CMakeFiles/alchemyformat.dir/depend --- src/formats/CMakeFiles/alchemyformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake Scanning dependencies of target alchemyformat /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build --- src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o --- [ 61%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/alchemyformat.dir/alchemyformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/alchemyformat.cpp --- src/formats/CMakeFiles/qchemformat.dir/all --- --- lib/qchemformat.so --- [ 61%] Linking CXX shared module ../../lib/qchemformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 61%] Built target qchemformat --- src/formats/CMakeFiles/acrformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend --- src/formats/CMakeFiles/acrformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake Scanning dependencies of target acrformat /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build --- src/formats/CMakeFiles/acrformat.dir/acrformat.o --- [ 61%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/acrformat.dir/acrformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/acrformat.cpp --- src/formats/CMakeFiles/asciiformat.dir/all --- --- lib/asciiformat.so --- [ 61%] Linking CXX shared module ../../lib/asciiformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 62%] Built target asciiformat --- src/formats/CMakeFiles/inchiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend --- src/formats/CMakeFiles/inchiformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake Scanning dependencies of target inchiformat /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build --- src/formats/CMakeFiles/inchiformat.dir/inchiformat.o --- [ 62%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/inchiformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/inchiformat.cpp --- src/formats/CMakeFiles/pointcloudformat.dir/all --- --- lib/pointcloudformat.so --- [ 62%] Linking CXX shared module ../../lib/pointcloudformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 62%] Built target pointcloudformat --- src/formats/CMakeFiles/balstformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend --- src/formats/CMakeFiles/balstformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake Scanning dependencies of target balstformat /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build --- src/formats/CMakeFiles/balstformat.dir/balstformat.o --- [ 62%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/balstformat.dir/balstformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/balstformat.cpp --- src/formats/CMakeFiles/acrformat.dir/all --- --- lib/acrformat.so --- [ 62%] Linking CXX shared module ../../lib/acrformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/acrformat.so CMakeFiles/acrformat.dir/acrformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 62%] Built target acrformat --- src/formats/CMakeFiles/outformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend --- src/formats/CMakeFiles/outformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake Scanning dependencies of target outformat /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build --- src/formats/CMakeFiles/outformat.dir/outformat.o --- [ 62%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/outformat.dir/outformat.o -c 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/construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake Scanning dependencies of target boxformat /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build --- src/formats/CMakeFiles/boxformat.dir/boxformat.o --- [ 62%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/boxformat.dir/boxformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/boxformat.cpp --- src/formats/CMakeFiles/inchiformat.dir/all --- --- src/formats/CMakeFiles/inchiformat.dir/getinchi.o --- [ 63%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/getinchi.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/getinchi.cpp --- src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o --- [ 63%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ 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CMakeFiles/boxformat.dir/boxformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 64%] Built target boxformat --- src/formats/CMakeFiles/gamessukformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend --- src/formats/CMakeFiles/gamessukformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake Scanning dependencies of target gamessukformat /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make 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/construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake Scanning dependencies of target carformat /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build --- src/formats/CMakeFiles/carformat.dir/carformat.o --- [ 64%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/carformat.dir/carformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/carformat.cpp --- src/formats/CMakeFiles/cacheformat.dir/all --- --- lib/cacheformat.so --- [ 65%] Linking CXX shared module ../../lib/cacheformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/outformat.dir/all --- --- lib/outformat.so --- [ 65%] Linking CXX shared module ../../lib/outformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/outformat.so CMakeFiles/outformat.dir/outformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/cacheformat.dir/all --- [ 65%] Built target cacheformat --- src/formats/CMakeFiles/chem3dformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend --- src/formats/CMakeFiles/outformat.dir/all --- [ 65%] Built target outformat --- src/formats/CMakeFiles/chemtoolformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend --- src/formats/CMakeFiles/chem3dformat.dir/all --- --- src/formats/CMakeFiles/chem3dformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/chemtoolformat.dir/all --- --- src/formats/CMakeFiles/chemtoolformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake Scanning dependencies of target chemtoolformat /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build --- src/formats/CMakeFiles/chem3dformat.dir/all --- Scanning dependencies of target chem3dformat /usr/bin/make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build --- src/formats/CMakeFiles/chemtoolformat.dir/all --- --- src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o --- [ 65%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o --- src/formats/CMakeFiles/chem3dformat.dir/all --- --- src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.o --- --- src/formats/CMakeFiles/chemtoolformat.dir/all --- cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemtoolformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/chemtoolformat.dir/chemtoolformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/chemtoolformat.cpp --- src/formats/CMakeFiles/chem3dformat.dir/all --- [ 65%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/chem3dformat.dir/chem3dformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/chem3dformat.cpp --- src/formats/CMakeFiles/carformat.dir/all --- --- lib/carformat.so --- [ 65%] Linking CXX shared module ../../lib/carformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/carformat.so CMakeFiles/carformat.dir/carformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 65%] Built target carformat --- src/formats/CMakeFiles/fhformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend --- src/formats/CMakeFiles/fhformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake Scanning dependencies of target fhformat /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build --- src/formats/CMakeFiles/fhformat.dir/fhformat.o --- [ 65%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/fhformat.dir/fhformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/fhformat.cpp --- src/formats/CMakeFiles/inchiformat.dir/all --- --- lib/inchiformat.so --- [ 65%] Linking CXX shared module ../../lib/inchiformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.o CMakeFiles/inchiformat.dir/getinchi.o CMakeFiles/inchiformat.dir/__/ops/unique.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 65%] Built target inchiformat --- src/formats/CMakeFiles/painterformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend --- src/formats/CMakeFiles/painterformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake Scanning dependencies of target painterformat /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build --- src/formats/CMakeFiles/painterformat.dir/painterformat.o --- [ 65%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/painterformat.dir/painterformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/painterformat.cpp --- src/formats/CMakeFiles/gamessukformat.dir/all --- --- lib/gamessukformat.so --- [ 65%] Linking CXX shared module ../../lib/gamessukformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 65%] Built target gamessukformat --- src/formats/CMakeFiles/cifformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend --- src/formats/CMakeFiles/cifformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake Scanning dependencies of target cifformat /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build --- src/formats/CMakeFiles/cifformat.dir/cifformat.o --- [ 65%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcifformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/cifformat.dir/cifformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/cifformat.cpp --- src/formats/CMakeFiles/chem3dformat.dir/all --- --- lib/chem3dformat.so --- [ 65%] Linking CXX shared module ../../lib/chem3dformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 65%] Built target chem3dformat --- src/formats/CMakeFiles/crkformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend --- src/formats/CMakeFiles/crkformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake Scanning dependencies of target crkformat /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build --- src/formats/CMakeFiles/crkformat.dir/crkformat.o --- [ 65%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/crkformat.dir/crkformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/crkformat.cpp --- src/formats/CMakeFiles/chemtoolformat.dir/all --- --- lib/chemtoolformat.so --- [ 66%] Linking CXX shared module ../../lib/chemtoolformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 66%] Built target chemtoolformat --- src/formats/CMakeFiles/fastsearchformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend --- src/formats/CMakeFiles/fastsearchformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake Scanning dependencies of target fastsearchformat /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build --- src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o --- [ 66%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/fastsearchformat.dir/fastsearchformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/fastsearchformat.cpp --- src/formats/CMakeFiles/fhformat.dir/all --- --- lib/fhformat.so --- [ 66%] Linking CXX shared module ../../lib/fhformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/fhformat.so CMakeFiles/fhformat.dir/fhformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 67%] Built target fhformat --- src/formats/CMakeFiles/fingerprintformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend --- src/formats/CMakeFiles/fingerprintformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake Scanning dependencies of target fingerprintformat /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build --- src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.o --- [ 67%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/fingerprintformat.dir/fingerprintformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/fingerprintformat.cpp --- src/formats/CMakeFiles/crkformat.dir/all --- --- lib/crkformat.so --- [ 68%] Linking CXX shared module ../../lib/crkformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/crkformat.so CMakeFiles/crkformat.dir/crkformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/painterformat.dir/all --- --- src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.o --- [ 68%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/painterformat.dir/__/depict/commandpainter.o -c /construction/science/openbabel/openbabel-2.4.1/src/depict/commandpainter.cpp --- src/formats/CMakeFiles/crkformat.dir/all --- [ 68%] Built target crkformat --- src/formats/CMakeFiles/freefracformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend --- src/formats/CMakeFiles/freefracformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake Scanning dependencies of target freefracformat /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build --- src/formats/CMakeFiles/freefracformat.dir/freefracformat.o --- [ 68%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/freefracformat.dir/freefracformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/freefracformat.cpp --- src/formats/CMakeFiles/painterformat.dir/all --- --- lib/painterformat.so --- [ 69%] Linking CXX shared module ../../lib/painterformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/painterformat.so CMakeFiles/painterformat.dir/painterformat.o CMakeFiles/painterformat.dir/__/depict/commandpainter.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 69%] Built target painterformat --- src/formats/CMakeFiles/pcmodelformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend --- src/formats/CMakeFiles/pcmodelformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake Scanning dependencies of 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/usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend --- src/formats/CMakeFiles/fchkformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake Scanning dependencies of target fchkformat /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build --- src/formats/CMakeFiles/freefracformat.dir/all --- --- lib/freefracformat.so --- --- src/formats/CMakeFiles/fchkformat.dir/all --- --- src/formats/CMakeFiles/fchkformat.dir/fchkformat.o --- [ 69%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/fchkformat.dir/fchkformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/fchkformat.cpp --- src/formats/CMakeFiles/freefracformat.dir/all --- [ 69%] Linking CXX shared module ../../lib/freefracformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 69%] Built target freefracformat --- src/formats/CMakeFiles/groformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend --- src/formats/CMakeFiles/groformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake Scanning dependencies of target groformat /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build --- src/formats/CMakeFiles/groformat.dir/groformat.o --- [ 69%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/groformat.dir/groformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/groformat.cpp --- src/formats/CMakeFiles/fingerprintformat.dir/all --- --- lib/fingerprintformat.so --- [ 69%] Linking CXX shared module ../../lib/fingerprintformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 70%] Built target fingerprintformat --- src/formats/CMakeFiles/gaussformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend --- src/formats/CMakeFiles/gaussformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake Scanning dependencies of target gaussformat /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build --- src/formats/CMakeFiles/gaussformat.dir/gaussformat.o --- [ 70%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/gaussformat.dir/gaussformat.o -c 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src/formats/CMakeFiles/lmpdatformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake Scanning dependencies of target lmpdatformat /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build --- src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o --- [ 71%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/lmpdatformat.dir/lmpdatformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/lmpdatformat.cpp --- src/formats/CMakeFiles/cifformat.dir/all --- --- lib/cifformat.so --- [ 71%] Linking CXX shared module ../../lib/cifformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/cifformat.so CMakeFiles/cifformat.dir/cifformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 71%] Built target cifformat --- src/formats/CMakeFiles/featformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend --- src/formats/CMakeFiles/featformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake Scanning dependencies of target featformat /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build --- src/formats/CMakeFiles/featformat.dir/featformat.o --- [ 71%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/featformat.dir/featformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/featformat.cpp --- src/formats/CMakeFiles/lmpdatformat.dir/all --- --- lib/lmpdatformat.so --- [ 71%] Linking CXX shared module ../../lib/lmpdatformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 71%] Built target lmpdatformat --- src/formats/CMakeFiles/mdffformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend --- src/formats/CMakeFiles/mdffformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake Scanning dependencies of target mdffformat /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build --- src/formats/CMakeFiles/mdffformat.dir/mdffformat.o --- [ 72%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS 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/construction/science/openbabel/.build/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake Scanning dependencies of target mmcifformat /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build --- src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o --- [ 73%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/mmcifformat.dir/mmcifformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/mmcifformat.cpp --- src/formats/CMakeFiles/featformat.dir/all --- --- lib/featformat.so --- [ 73%] Linking CXX shared module ../../lib/featformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/featformat.so CMakeFiles/featformat.dir/featformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 73%] Built target featformat --- src/formats/CMakeFiles/zindoformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend --- src/formats/CMakeFiles/zindoformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake Scanning dependencies of target zindoformat /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build --- src/formats/CMakeFiles/zindoformat.dir/zindoformat.o --- [ 73%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ 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/construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake Scanning dependencies of target mmodformat /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build --- src/formats/CMakeFiles/mmodformat.dir/mmodformat.o --- [ 74%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmodformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/mmodformat.dir/mmodformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/mmodformat.cpp --- src/formats/CMakeFiles/gaussformat.dir/all --- --- lib/gaussformat.so --- [ 74%] Linking CXX shared module ../../lib/gaussformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/zindoformat.dir/all --- --- lib/zindoformat.so --- [ 74%] Linking CXX shared module ../../lib/zindoformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/gaussformat.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/zindoformat.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/gaussformat.dir/all --- [ 74%] Built target gaussformat --- src/formats/CMakeFiles/rsmiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend --- src/formats/CMakeFiles/rsmiformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake Scanning dependencies of target rsmiformat /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build --- src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o --- --- src/formats/CMakeFiles/zindoformat.dir/all --- [ 75%] Built target zindoformat --- src/formats/CMakeFiles/rsmiformat.dir/all --- [ 75%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drsmiformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/rsmiformat.dir/rsmiformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/rsmiformat.cpp --- src/formats/CMakeFiles/moldenformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend --- src/formats/CMakeFiles/moldenformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake Scanning dependencies of target moldenformat /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build --- src/formats/CMakeFiles/moldenformat.dir/moldenformat.o --- [ 75%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/moldenformat.dir/moldenformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/moldenformat.cpp --- src/formats/CMakeFiles/mdffformat.dir/all --- --- lib/mdffformat.so --- [ 75%] Linking CXX shared module ../../lib/mdffformat.so cd /construction/science/openbabel/.build/src/formats && 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/construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake Scanning dependencies of target mpdformat /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build --- src/formats/CMakeFiles/mpdformat.dir/mpdformat.o --- [ 76%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/mpdformat.dir/mpdformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/mpdformat.cpp --- src/formats/CMakeFiles/mmcifformat.dir/all --- --- lib/mmcifformat.so --- [ 77%] Linking CXX shared module ../../lib/mmcifformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 77%] Built target mmcifformat --- src/formats/CMakeFiles/mpqcformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend --- src/formats/CMakeFiles/mpqcformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake Scanning dependencies of target mpqcformat /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build --- src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o --- [ 77%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o cd 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Linking CXX shared module ../../lib/moldenformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 77%] Built target moldenformat --- src/formats/CMakeFiles/crystal09format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend --- src/formats/CMakeFiles/crystal09format.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake Scanning dependencies of target crystal09format /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build --- src/formats/CMakeFiles/crystal09format.dir/crystal09format.o --- [ 77%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/crystal09format.dir/crystal09format.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/crystal09format.cpp --- src/formats/CMakeFiles/rsmiformat.dir/all --- --- lib/rsmiformat.so --- --- src/formats/CMakeFiles/mmodformat.dir/all --- --- lib/mmodformat.so --- --- src/formats/CMakeFiles/rsmiformat.dir/all --- [ 77%] Linking CXX shared module ../../lib/rsmiformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/mmodformat.dir/all --- [ 77%] 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-lz --- src/formats/CMakeFiles/mmodformat.dir/all --- [ 77%] Built target mmodformat --- src/formats/CMakeFiles/pqrformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend --- src/formats/CMakeFiles/pqrformat.dir/depend --- --- src/formats/CMakeFiles/rsmiformat.dir/all --- [ 77%] Built target rsmiformat --- src/formats/CMakeFiles/pqrformat.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/orcaformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend --- src/formats/CMakeFiles/orcaformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/pqrformat.dir/all --- Scanning dependencies of target pqrformat /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build --- src/formats/CMakeFiles/pqrformat.dir/pqrformat.o --- --- src/formats/CMakeFiles/orcaformat.dir/all --- Scanning dependencies of target orcaformat --- src/formats/CMakeFiles/pqrformat.dir/all --- [ 77%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.o --- src/formats/CMakeFiles/orcaformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build --- src/formats/CMakeFiles/pqrformat.dir/all --- cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/pqrformat.dir/pqrformat.o -c 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src/formats/CMakeFiles/msmsformat.dir/depend --- src/formats/CMakeFiles/msmsformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake Scanning dependencies of target msmsformat /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build --- src/formats/CMakeFiles/msmsformat.dir/msmsformat.o --- [ 77%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsmsformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/msmsformat.dir/msmsformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/msmsformat.cpp --- src/formats/CMakeFiles/mpdformat.dir/all --- --- lib/mpdformat.so --- [ 77%] Linking CXX shared module ../../lib/mpdformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 77%] Built target mpdformat --- src/formats/CMakeFiles/pdbqtformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend --- src/formats/CMakeFiles/pdbqtformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake Scanning dependencies of target pdbqtformat /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build --- src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o --- [ 77%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/pdbqtformat.dir/pdbqtformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/pdbqtformat.cpp --- src/formats/CMakeFiles/msmsformat.dir/all --- --- lib/msmsformat.so --- [ 77%] Linking CXX shared module ../../lib/msmsformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 77%] Built target msmsformat --- src/formats/CMakeFiles/molproformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend --- src/formats/CMakeFiles/molproformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake Scanning dependencies of target molproformat /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build --- src/formats/CMakeFiles/molproformat.dir/molproformat.o --- [ 77%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ 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--- --- src/formats/CMakeFiles/pqrformat.dir/all --- [ 78%] Linking CXX shared module ../../lib/pqrformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/orcaformat.dir/all --- [ 79%] Linking CXX shared module ../../lib/orcaformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/pqrformat.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/orcaformat.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz --- src/formats/CMakeFiles/pqrformat.dir/all --- [ 79%] Built target pqrformat --- src/formats/CMakeFiles/posformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend --- src/formats/CMakeFiles/posformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/orcaformat.dir/all --- [ 79%] Built target orcaformat --- tools/CMakeFiles/obprobe.dir/all --- --- src/formats/CMakeFiles/posformat.dir/all --- Scanning dependencies of target posformat /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build --- tools/CMakeFiles/obprobe.dir/all --- /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend --- tools/CMakeFiles/obprobe.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obprobe.dir/DependInfo.cmake --- src/formats/CMakeFiles/posformat.dir/all --- --- src/formats/CMakeFiles/posformat.dir/posformat.o --- [ 80%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/include/inchi -I/usr/local/include/libxml2 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/posformat.dir/posformat.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/posformat.cpp --- tools/CMakeFiles/obprobe.dir/all --- Scanning dependencies of target obprobe /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/build --- tools/CMakeFiles/obprobe.dir/obprobe.o --- [ 80%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obprobe.dir/obprobe.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obprobe.cpp --- src/formats/CMakeFiles/crystal09format.dir/all --- --- lib/crystal09format.so --- [ 80%] Linking CXX shared module ../../lib/crystal09format.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 80%] Built target crystal09format --- tools/CMakeFiles/obgen.dir/all --- /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend --- tools/CMakeFiles/obgen.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obgen.dir/DependInfo.cmake Scanning dependencies of target obgen /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/build --- tools/CMakeFiles/obgen.dir/obgen.o --- [ 80%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obgen.dir/obgen.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obgen.cpp --- tools/CMakeFiles/obprobe.dir/all --- --- bin/obprobe --- [ 80%] Linking CXX executable ../bin/obprobe cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obprobe.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obprobe.dir/obprobe.o -o ../bin/obprobe -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 80%] Built target obprobe --- tools/CMakeFiles/obprop.dir/all --- /usr/bin/make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend --- tools/CMakeFiles/obprop.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obprop.dir/DependInfo.cmake Scanning dependencies of target obprop /usr/bin/make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/build --- tools/CMakeFiles/obprop.dir/obprop.o --- [ 81%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL 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../../lib/posformat.so CMakeFiles/posformat.dir/posformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 81%] Built target posformat --- tools/CMakeFiles/obabel.dir/all --- /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend --- tools/CMakeFiles/obabel.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obabel.dir/DependInfo.cmake Scanning dependencies of target obabel /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build --- tools/CMakeFiles/obabel.dir/obabel.o --- [ 81%] 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&& /usr/local/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/molproformat.so CMakeFiles/molproformat.dir/molproformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 82%] Built target molproformat --- tools/CMakeFiles/obthermo.dir/all --- /usr/bin/make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend --- tools/CMakeFiles/obthermo.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obthermo.dir/DependInfo.cmake Scanning dependencies of target obthermo /usr/bin/make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/build --- tools/CMakeFiles/obthermo.dir/obthermo.o --- [ 82%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o 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/construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obfit.dir/DependInfo.cmake Scanning dependencies of target obfit /usr/bin/make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/build --- tools/CMakeFiles/obfit.dir/obfit.o --- [ 83%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obfit.dir/obfit.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obfit.cpp --- tools/CMakeFiles/obabel.dir/all --- --- bin/obabel --- [ 83%] Linking CXX executable ../bin/obabel cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obabel.dir/obabel.o -o ../bin/obabel -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 84%] Built target obabel --- tools/CMakeFiles/obenergy.dir/all --- /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend --- tools/CMakeFiles/obenergy.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obenergy.dir/DependInfo.cmake Scanning dependencies of target obenergy /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build --- tools/CMakeFiles/obenergy.dir/obenergy.o --- [ 84%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obenergy.dir/obenergy.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obenergy.cpp --- tools/CMakeFiles/obthermo.dir/all --- --- bin/obthermo --- --- tools/CMakeFiles/obprop.dir/all --- --- bin/obprop --- [ 84%] Linking CXX executable ../bin/obprop cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 --- tools/CMakeFiles/obthermo.dir/all --- [ 84%] Linking CXX executable ../bin/obthermo cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1 --- tools/CMakeFiles/obprop.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obprop.dir/obprop.o -o ../bin/obprop -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz --- tools/CMakeFiles/obthermo.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obthermo.dir/obthermo.o -o ../bin/obthermo -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz --- tools/CMakeFiles/obprop.dir/all --- [ 84%] Built target obprop --- tools/CMakeFiles/obchiral.dir/all --- /usr/bin/make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/depend --- tools/CMakeFiles/obchiral.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obchiral.dir/DependInfo.cmake --- tools/CMakeFiles/obthermo.dir/all --- [ 84%] Built target obthermo --- tools/CMakeFiles/obchiral.dir/all --- Scanning dependencies of target obchiral --- tools/CMakeFiles/obconformer.dir/all --- /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend --- tools/CMakeFiles/obchiral.dir/all --- /usr/bin/make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/build --- tools/CMakeFiles/obconformer.dir/all --- --- tools/CMakeFiles/obconformer.dir/depend --- --- tools/CMakeFiles/obchiral.dir/all --- --- tools/CMakeFiles/obchiral.dir/obchiral.o --- --- tools/CMakeFiles/obconformer.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obconformer.dir/DependInfo.cmake --- tools/CMakeFiles/obchiral.dir/all --- [ 84%] Building CXX object tools/CMakeFiles/obchiral.dir/obchiral.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obchiral.dir/obchiral.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obchiral.cpp --- tools/CMakeFiles/obconformer.dir/all --- Scanning dependencies of target obconformer /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build --- tools/CMakeFiles/obconformer.dir/obconformer.o --- [ 84%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obconformer.dir/obconformer.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obconformer.cpp --- src/formats/CMakeFiles/pdbqtformat.dir/all --- --- lib/pdbqtformat.so --- [ 84%] Linking CXX shared module ../../lib/pdbqtformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../../lib/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib -lm -ldl -lz ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lc -lm -ldl -lz [ 84%] Built target pdbqtformat --- tools/CMakeFiles/obsym.dir/all --- /usr/bin/make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/depend --- tools/CMakeFiles/obsym.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obsym.dir/DependInfo.cmake Scanning dependencies of target obsym /usr/bin/make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/build --- tools/CMakeFiles/obsym.dir/obsym.o --- [ 84%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obsym.dir/obsym.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obsym.cpp --- tools/CMakeFiles/obenergy.dir/all --- --- bin/obenergy --- [ 84%] Linking CXX executable ../bin/obenergy cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obenergy.dir/obenergy.o -o ../bin/obenergy -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz --- tools/CMakeFiles/obfit.dir/all --- --- bin/obfit --- --- tools/CMakeFiles/obenergy.dir/all --- [ 84%] Built target obenergy --- tools/CMakeFiles/obrotamer.dir/all --- /usr/bin/make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend --- tools/CMakeFiles/obrotamer.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake --- tools/CMakeFiles/obfit.dir/all --- [ 84%] Linking CXX executable ../bin/obfit cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 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-I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obrotamer.dir/obrotamer.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obrotamer.cpp --- tools/CMakeFiles/obfit.dir/all --- [ 85%] Built target obfit --- tools/CMakeFiles/babel.dir/all --- /usr/bin/make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/depend --- tools/CMakeFiles/babel.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/babel.dir/DependInfo.cmake Scanning dependencies of target babel /usr/bin/make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/build --- tools/CMakeFiles/babel.dir/babel.o --- [ 85%] Building CXX object tools/CMakeFiles/babel.dir/babel.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/babel.dir/babel.o -c /construction/science/openbabel/openbabel-2.4.1/tools/babel.cpp --- tools/CMakeFiles/obconformer.dir/all --- --- bin/obconformer --- [ 85%] Linking CXX executable 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/construction/science/openbabel/.build/tools/CMakeFiles/obrms.dir/DependInfo.cmake Scanning dependencies of target obrms /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build --- tools/CMakeFiles/obrms.dir/obrms.o --- [ 86%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obrms.dir/obrms.o -c 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/construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obrotate.dir/DependInfo.cmake Scanning dependencies of target obrotate /usr/bin/make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/build --- tools/CMakeFiles/obrotate.dir/obrotate.o --- [ 86%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obrotate.dir/obrotate.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obrotate.cpp --- tools/CMakeFiles/obchiral.dir/all --- --- bin/obchiral --- [ 86%] Linking CXX executable ../bin/obchiral cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obchiral.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obchiral.dir/obchiral.o -o ../bin/obchiral -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 86%] Built target obchiral --- tools/CMakeFiles/obtautomer.dir/all --- /usr/bin/make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/depend --- tools/CMakeFiles/obtautomer.dir/depend --- cd /construction/science/openbabel/.build && 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-I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obtautomer.dir/obtautomer.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obtautomer.cpp --- tools/CMakeFiles/obrotate.dir/all --- --- bin/obrotate --- [ 86%] Linking CXX executable ../bin/obrotate cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obrotate.dir/obrotate.o -o ../bin/obrotate -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 86%] Built target obrotate --- tools/CMakeFiles/obdistgen.dir/all --- /usr/bin/make -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/depend --- tools/CMakeFiles/obdistgen.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obdistgen.dir/DependInfo.cmake Scanning dependencies of target obdistgen /usr/bin/make -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/build --- tools/CMakeFiles/obdistgen.dir/obdistgen.o --- [ 86%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obdistgen.dir/obdistgen.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obdistgen.cpp --- tools/CMakeFiles/babel.dir/all --- --- bin/babel --- [ 86%] Linking CXX executable ../bin/babel cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/babel.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/babel.dir/babel.o -o ../bin/babel -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 86%] Built target babel --- tools/CMakeFiles/obminimize.dir/all --- /usr/bin/make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend --- tools/CMakeFiles/obminimize.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obminimize.dir/DependInfo.cmake Scanning dependencies of target obminimize /usr/bin/make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/build --- tools/CMakeFiles/obminimize.dir/obminimize.o --- [ 86%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.o cd 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--verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obrotamer.dir/obrotamer.o -o ../bin/obrotamer -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 86%] Built target obrotamer --- tools/CMakeFiles/obspectrophore.dir/all --- /usr/bin/make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend --- tools/CMakeFiles/obspectrophore.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake Scanning dependencies of target obspectrophore /usr/bin/make -f 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CMakeFiles/obminimize.dir/obminimize.o -o ../bin/obminimize -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz --- tools/CMakeFiles/obrms.dir/all --- [ 86%] Built target obrms --- tools/CMakeFiles/obgrep.dir/all --- /usr/bin/make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend --- tools/CMakeFiles/obgrep.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obgrep.dir/DependInfo.cmake --- tools/CMakeFiles/obminimize.dir/all --- [ 86%] Built target obminimize --- tools/CMakeFiles/obgrep.dir/all --- Scanning dependencies of target obgrep --- src/GUI/CMakeFiles/obgui.dir/all --- /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend --- tools/CMakeFiles/obgrep.dir/all --- /usr/bin/make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build --- src/GUI/CMakeFiles/obgui.dir/all --- --- src/GUI/CMakeFiles/obgui.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/GUI /construction/science/openbabel/.build /construction/science/openbabel/.build/src/GUI /construction/science/openbabel/.build/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake --- tools/CMakeFiles/obgrep.dir/all --- --- tools/CMakeFiles/obgrep.dir/obgrep.o --- [ 86%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obgrep.dir/obgrep.o -c /construction/science/openbabel/openbabel-2.4.1/tools/obgrep.cpp --- src/GUI/CMakeFiles/obgui.dir/all --- Scanning dependencies of target obgui /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/build --- src/GUI/CMakeFiles/obgui.dir/OBGUI.o --- [ 86%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.o cd /construction/science/openbabel/.build/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/src/GUI/. -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/OBGUI.o -c /construction/science/openbabel/openbabel-2.4.1/src/GUI/OBGUI.cpp --- tools/CMakeFiles/obtautomer.dir/all --- --- bin/obtautomer --- [ 86%] Linking CXX executable ../bin/obtautomer cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obtautomer.dir/obtautomer.o -o ../bin/obtautomer -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 87%] Built target obtautomer --- test/CMakeFiles/test_inchiwrite.dir/all --- /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend --- test/CMakeFiles/test_inchiwrite.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/test /construction/science/openbabel/.build /construction/science/openbabel/.build/test /construction/science/openbabel/.build/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake Scanning dependencies of target test_inchiwrite /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build --- test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o --- [ 87%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_inchiwrite.dir/inchiwrite.o -c /construction/science/openbabel/openbabel-2.4.1/test/inchiwrite.cpp --- tools/CMakeFiles/obdistgen.dir/all --- --- bin/obdistgen --- [ 87%] Linking CXX executable ../bin/obdistgen cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obdistgen.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obdistgen.dir/obdistgen.o -o ../bin/obdistgen -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 87%] Built target obdistgen --- test/CMakeFiles/roundtrip.dir/all --- /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend --- test/CMakeFiles/roundtrip.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/test /construction/science/openbabel/.build /construction/science/openbabel/.build/test /construction/science/openbabel/.build/test/CMakeFiles/roundtrip.dir/DependInfo.cmake Scanning dependencies of target roundtrip /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build --- test/CMakeFiles/roundtrip.dir/roundtrip.o --- [ 88%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/roundtrip.dir/roundtrip.o -c /construction/science/openbabel/openbabel-2.4.1/test/roundtrip.cpp --- tools/CMakeFiles/obspectrophore.dir/all --- --- bin/obspectrophore --- [ 89%] Linking CXX executable ../bin/obspectrophore cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obspectrophore.dir/obspectrophore.o -o ../bin/obspectrophore -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 89%] Built target obspectrophore --- test/CMakeFiles/test_runner.dir/all --- /usr/bin/make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend --- test/CMakeFiles/test_runner.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/test /construction/science/openbabel/.build /construction/science/openbabel/.build/test /construction/science/openbabel/.build/test/CMakeFiles/test_runner.dir/DependInfo.cmake --- tools/CMakeFiles/obgrep.dir/all --- --- bin/obgrep --- [ 90%] Linking CXX executable ../bin/obgrep cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obgrep.dir/obgrep.o -o ../bin/obgrep -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 90%] Built target obgrep --- scripts/CMakeFiles/bindings_python.dir/all --- /usr/bin/make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend --- scripts/CMakeFiles/bindings_python.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/scripts /construction/science/openbabel/.build /construction/science/openbabel/.build/scripts /construction/science/openbabel/.build/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake Scanning dependencies of target bindings_python /usr/bin/make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/build --- test/CMakeFiles/test_runner.dir/all --- Scanning dependencies of target test_runner /usr/bin/make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/build --- scripts/CMakeFiles/bindings_python.dir/all --- --- scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o --- [ 90%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o cd /construction/science/openbabel/.build/scripts && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbindings_python_EXPORTS -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/usr/local/include/python2.7 -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -c /construction/science/openbabel/openbabel-2.4.1/scripts/python/openbabel-python.cpp --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/test_runner.o --- [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/test_runner.o -c /construction/science/openbabel/.build/test/test_runner.cpp --- test/CMakeFiles/test_runner.dir/aligntest.o --- [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/aligntest.o -c /construction/science/openbabel/openbabel-2.4.1/test/aligntest.cpp --- test/CMakeFiles/roundtrip.dir/all --- --- bin/roundtrip --- [ 90%] Linking CXX executable ../bin/roundtrip cd /construction/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/roundtrip.dir/roundtrip.o -o ../bin/roundtrip -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz --- test/CMakeFiles/test_inchiwrite.dir/all --- --- test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o --- --- test/CMakeFiles/roundtrip.dir/all --- [ 90%] Built target roundtrip --- src/GUI/CMakeFiles/obgui.dir/all --- --- src/GUI/CMakeFiles/obgui.dir/stdwx.o --- --- test/CMakeFiles/test_inchiwrite.dir/all --- [ 90%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -c /construction/science/openbabel/openbabel-2.4.1/src/formats/getinchi.cpp --- src/GUI/CMakeFiles/obgui.dir/all --- [ 90%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.o cd /construction/science/openbabel/.build/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/src/GUI/. -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/stdwx.o -c /construction/science/openbabel/openbabel-2.4.1/src/GUI/stdwx.cpp --- test/CMakeFiles/test_inchiwrite.dir/all --- --- bin/test_inchiwrite --- [ 90%] Linking CXX executable ../bin/test_inchiwrite cd /construction/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/test_inchiwrite.dir/inchiwrite.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -o ../bin/test_inchiwrite -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [ 90%] Built target test_inchiwrite --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/automorphismtest.o --- [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/automorphismtest.o -c /construction/science/openbabel/openbabel-2.4.1/test/automorphismtest.cpp --- test/CMakeFiles/test_runner.dir/buildertest.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/buildertest.o -c /construction/science/openbabel/openbabel-2.4.1/test/buildertest.cpp --- src/GUI/CMakeFiles/obgui.dir/all --- --- src/GUI/CMakeFiles/obgui.dir/optswx.o --- [ 91%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.o cd /construction/science/openbabel/.build/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/src/GUI/. -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/optswx.o -c /construction/science/openbabel/openbabel-2.4.1/src/GUI/optswx.cpp --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/canonconsistenttest.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/canonconsistenttest.o -c /construction/science/openbabel/openbabel-2.4.1/test/canonconsistenttest.cpp --- test/CMakeFiles/test_runner.dir/canonstabletest.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/canonstabletest.o -c /construction/science/openbabel/openbabel-2.4.1/test/canonstabletest.cpp --- test/CMakeFiles/test_runner.dir/carspacegrouptest.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/carspacegrouptest.o -c /construction/science/openbabel/openbabel-2.4.1/test/carspacegrouptest.cpp --- test/CMakeFiles/test_runner.dir/cifspacegrouptest.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/cifspacegrouptest.o -c /construction/science/openbabel/openbabel-2.4.1/test/cifspacegrouptest.cpp --- test/CMakeFiles/test_runner.dir/cistranstest.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/cistranstest.o -c /construction/science/openbabel/openbabel-2.4.1/test/cistranstest.cpp --- test/CMakeFiles/test_runner.dir/graphsymtest.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/graphsymtest.o -c /construction/science/openbabel/openbabel-2.4.1/test/graphsymtest.cpp --- test/CMakeFiles/test_runner.dir/gziptest.o --- [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/gziptest.o -c /construction/science/openbabel/openbabel-2.4.1/test/gziptest.cpp --- test/CMakeFiles/test_runner.dir/implicitHtest.o --- [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/implicitHtest.o -c /construction/science/openbabel/openbabel-2.4.1/test/implicitHtest.cpp --- src/GUI/CMakeFiles/obgui.dir/all --- --- bin/obgui --- [ 92%] Linking CXX executable ../../bin/obgui cd /construction/science/openbabel/.build/src/GUI && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obgui.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/obgui.dir/OBGUI.o CMakeFiles/obgui.dir/stdwx.o CMakeFiles/obgui.dir/optswx.o -o ../../bin/obgui -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../../lib/libopenbabel.so.5.0.0 -L/usr/local/lib -pthread -lwx_baseu-3.0 -lwx_gtk2u_core-3.0 -lwx_gtk2u_adv-3.0 -lm -ldl -lz [ 93%] Built target obgui --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/lssrtest.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/lssrtest.o -c /construction/science/openbabel/openbabel-2.4.1/test/lssrtest.cpp --- test/CMakeFiles/test_runner.dir/isomorphismtest.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/isomorphismtest.o -c /construction/science/openbabel/openbabel-2.4.1/test/isomorphismtest.cpp --- test/CMakeFiles/test_runner.dir/multicmltest.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/multicmltest.o -c /construction/science/openbabel/openbabel-2.4.1/test/multicmltest.cpp --- test/CMakeFiles/test_runner.dir/regressionstest.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/regressionstest.o -c /construction/science/openbabel/openbabel-2.4.1/test/regressionstest.cpp --- test/CMakeFiles/test_runner.dir/rotortest.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/rotortest.o -c /construction/science/openbabel/openbabel-2.4.1/test/rotortest.cpp --- test/CMakeFiles/test_runner.dir/shuffletest.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/shuffletest.o -c /construction/science/openbabel/openbabel-2.4.1/test/shuffletest.cpp --- test/CMakeFiles/test_runner.dir/smilestest.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/smilestest.o -c /construction/science/openbabel/openbabel-2.4.1/test/smilestest.cpp --- test/CMakeFiles/test_runner.dir/spectrophoretest.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/spectrophoretest.o -c /construction/science/openbabel/openbabel-2.4.1/test/spectrophoretest.cpp --- test/CMakeFiles/test_runner.dir/squareplanartest.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/squareplanartest.o -c /construction/science/openbabel/openbabel-2.4.1/test/squareplanartest.cpp --- test/CMakeFiles/test_runner.dir/stereotest.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/stereotest.o -c /construction/science/openbabel/openbabel-2.4.1/test/stereotest.cpp --- test/CMakeFiles/test_runner.dir/stereoperceptiontest.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/stereoperceptiontest.o -c /construction/science/openbabel/openbabel-2.4.1/test/stereoperceptiontest.cpp --- test/CMakeFiles/test_runner.dir/tautomertest.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/tautomertest.o -c /construction/science/openbabel/openbabel-2.4.1/test/tautomertest.cpp --- test/CMakeFiles/test_runner.dir/tetrahedraltest.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/tetrahedraltest.o -c /construction/science/openbabel/openbabel-2.4.1/test/tetrahedraltest.cpp --- test/CMakeFiles/test_runner.dir/tetranonplanartest.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/tetranonplanartest.o -c /construction/science/openbabel/openbabel-2.4.1/test/tetranonplanartest.cpp --- test/CMakeFiles/test_runner.dir/tetraplanartest.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/tetraplanartest.o -c /construction/science/openbabel/openbabel-2.4.1/test/tetraplanartest.cpp --- test/CMakeFiles/test_runner.dir/uniqueidtest.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/uniqueidtest.o -c /construction/science/openbabel/openbabel-2.4.1/test/uniqueidtest.cpp --- test/CMakeFiles/test_runner.dir/aromatest.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/aromatest.o -c /construction/science/openbabel/openbabel-2.4.1/test/aromatest.cpp --- test/CMakeFiles/test_runner.dir/atom.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/atom.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/atom.o -c /construction/science/openbabel/openbabel-2.4.1/test/atom.cpp --- test/CMakeFiles/test_runner.dir/bond.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/bond.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/bond.o -c /construction/science/openbabel/openbabel-2.4.1/test/bond.cpp --- test/CMakeFiles/test_runner.dir/cansmi.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/cansmi.o -c /construction/science/openbabel/openbabel-2.4.1/test/cansmi.cpp --- test/CMakeFiles/test_runner.dir/charge_mmff94.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/charge_mmff94.o -c /construction/science/openbabel/openbabel-2.4.1/test/charge_mmff94.cpp --- test/CMakeFiles/test_runner.dir/charge_gasteiger.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/charge_gasteiger.o -c /construction/science/openbabel/openbabel-2.4.1/test/charge_gasteiger.cpp --- test/CMakeFiles/test_runner.dir/conversion.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/conversion.o -c /construction/science/openbabel/openbabel-2.4.1/test/conversion.cpp --- test/CMakeFiles/test_runner.dir/datatest.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/datatest.o -c /construction/science/openbabel/openbabel-2.4.1/test/datatest.cpp --- test/CMakeFiles/test_runner.dir/ffgaff.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/ffgaff.o -c /construction/science/openbabel/openbabel-2.4.1/test/ffgaff.cpp --- test/CMakeFiles/test_runner.dir/ffghemical.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/ffghemical.o -c /construction/science/openbabel/openbabel-2.4.1/test/ffghemical.cpp --- test/CMakeFiles/test_runner.dir/ffmmff94.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/ffmmff94.o -c /construction/science/openbabel/openbabel-2.4.1/test/ffmmff94.cpp --- test/CMakeFiles/test_runner.dir/ffuff.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/ffuff.o -c /construction/science/openbabel/openbabel-2.4.1/test/ffuff.cpp --- test/CMakeFiles/test_runner.dir/formalcharge.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/formalcharge.o -c /construction/science/openbabel/openbabel-2.4.1/test/formalcharge.cpp --- test/CMakeFiles/test_runner.dir/format.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/format.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/format.o -c /construction/science/openbabel/openbabel-2.4.1/test/format.cpp --- test/CMakeFiles/test_runner.dir/formula.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/formula.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/formula.o -c /construction/science/openbabel/openbabel-2.4.1/test/formula.cpp --- test/CMakeFiles/test_runner.dir/internalcoord.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/internalcoord.o -c /construction/science/openbabel/openbabel-2.4.1/test/internalcoord.cpp --- test/CMakeFiles/test_runner.dir/invalidsmarts.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/invalidsmarts.o -c /construction/science/openbabel/openbabel-2.4.1/test/invalidsmarts.cpp --- test/CMakeFiles/test_runner.dir/invalidsmiles.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/invalidsmiles.o -c /construction/science/openbabel/openbabel-2.4.1/test/invalidsmiles.cpp --- test/CMakeFiles/test_runner.dir/iterators.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/iterators.o -c /construction/science/openbabel/openbabel-2.4.1/test/iterators.cpp --- test/CMakeFiles/test_runner.dir/logp_psa.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/logp_psa.o -c /construction/science/openbabel/openbabel-2.4.1/test/logp_psa.cpp --- test/CMakeFiles/test_runner.dir/math.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/math.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/math.o -c /construction/science/openbabel/openbabel-2.4.1/test/math.cpp --- test/CMakeFiles/test_runner.dir/mol.o --- [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/mol.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/mol.o -c /construction/science/openbabel/openbabel-2.4.1/test/mol.cpp --- test/CMakeFiles/test_runner.dir/phmodel.o --- [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/phmodel.o -c /construction/science/openbabel/openbabel-2.4.1/test/phmodel.cpp --- test/CMakeFiles/test_runner.dir/residue.o --- [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/residue.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/residue.o -c /construction/science/openbabel/openbabel-2.4.1/test/residue.cpp --- test/CMakeFiles/test_runner.dir/ringtest.o --- [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/ringtest.o -c /construction/science/openbabel/openbabel-2.4.1/test/ringtest.cpp --- test/CMakeFiles/test_runner.dir/smartstest.o --- [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/smartstest.o -c /construction/science/openbabel/openbabel-2.4.1/test/smartstest.cpp --- test/CMakeFiles/test_runner.dir/smartsparse.o --- [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/smartsparse.o -c /construction/science/openbabel/openbabel-2.4.1/test/smartsparse.cpp --- test/CMakeFiles/test_runner.dir/smilesmatch.o --- [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/smilesmatch.o -c /construction/science/openbabel/openbabel-2.4.1/test/smilesmatch.cpp --- test/CMakeFiles/test_runner.dir/unitcell.o --- [100%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/unitcell.o -c /construction/science/openbabel/openbabel-2.4.1/test/unitcell.cpp --- test/CMakeFiles/test_runner.dir/cmlreadfile.o --- [100%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/cmlreadfile.o -c /construction/science/openbabel/openbabel-2.4.1/test/cmlreadfile.cpp --- test/CMakeFiles/test_runner.dir/obtest.o --- [100%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -isystem /usr/local/lib/wx/include/gtk2-unicode-3.0 -isystem /usr/local/include/wx-3.0 -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-2.4.1/data -I/construction/science/openbabel/openbabel-2.4.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-2.4.1/test -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/construction/science/openbabel/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/construction/science/openbabel/.build/lib//\"" -DTESTDIR=/construction/science/openbabel/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/obtest.o -c /construction/science/openbabel/openbabel-2.4.1/test/obtest.cpp --- bin/test_runner --- [100%] Linking CXX executable ../bin/test_runner cd /construction/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_runner.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG CMakeFiles/test_runner.dir/test_runner.o CMakeFiles/test_runner.dir/aligntest.o CMakeFiles/test_runner.dir/automorphismtest.o CMakeFiles/test_runner.dir/buildertest.o CMakeFiles/test_runner.dir/canonconsistenttest.o CMakeFiles/test_runner.dir/canonstabletest.o CMakeFiles/test_runner.dir/carspacegrouptest.o CMakeFiles/test_runner.dir/cifspacegrouptest.o CMakeFiles/test_runner.dir/cistranstest.o CMakeFiles/test_runner.dir/graphsymtest.o CMakeFiles/test_runner.dir/gziptest.o CMakeFiles/test_runner.dir/implicitHtest.o CMakeFiles/test_runner.dir/lssrtest.o CMakeFiles/test_runner.dir/isomorphismtest.o CMakeFiles/test_runner.dir/multicmltest.o CMakeFiles/test_runner.dir/regressionstest.o CMakeFiles/test_runner.dir/rotortest.o CMakeFiles/test_runner.dir/shuffletest.o CMakeFiles/test_runner.dir/smilestest.o CMakeFiles/test_runner.dir/spectrophoretest.o CMakeFiles/test_runner.dir/squareplanartest.o CMakeFiles/test_runner.dir/stereotest.o CMakeFiles/test_runner.dir/stereoperceptiontest.o CMakeFiles/test_runner.dir/tautomertest.o CMakeFiles/test_runner.dir/tetrahedraltest.o CMakeFiles/test_runner.dir/tetranonplanartest.o CMakeFiles/test_runner.dir/tetraplanartest.o CMakeFiles/test_runner.dir/uniqueidtest.o CMakeFiles/test_runner.dir/aromatest.o CMakeFiles/test_runner.dir/atom.o CMakeFiles/test_runner.dir/bond.o CMakeFiles/test_runner.dir/cansmi.o CMakeFiles/test_runner.dir/charge_mmff94.o CMakeFiles/test_runner.dir/charge_gasteiger.o CMakeFiles/test_runner.dir/conversion.o CMakeFiles/test_runner.dir/datatest.o CMakeFiles/test_runner.dir/ffgaff.o CMakeFiles/test_runner.dir/ffghemical.o CMakeFiles/test_runner.dir/ffmmff94.o CMakeFiles/test_runner.dir/ffuff.o CMakeFiles/test_runner.dir/formalcharge.o CMakeFiles/test_runner.dir/format.o CMakeFiles/test_runner.dir/formula.o CMakeFiles/test_runner.dir/internalcoord.o CMakeFiles/test_runner.dir/invalidsmarts.o CMakeFiles/test_runner.dir/invalidsmiles.o CMakeFiles/test_runner.dir/iterators.o CMakeFiles/test_runner.dir/logp_psa.o CMakeFiles/test_runner.dir/math.o CMakeFiles/test_runner.dir/mol.o CMakeFiles/test_runner.dir/phmodel.o CMakeFiles/test_runner.dir/residue.o CMakeFiles/test_runner.dir/ringtest.o CMakeFiles/test_runner.dir/smartstest.o CMakeFiles/test_runner.dir/smartsparse.o CMakeFiles/test_runner.dir/smilesmatch.o CMakeFiles/test_runner.dir/unitcell.o CMakeFiles/test_runner.dir/cmlreadfile.o CMakeFiles/test_runner.dir/obtest.o -o ../bin/test_runner -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [100%] Built target test_runner --- scripts/CMakeFiles/bindings_python.dir/all --- --- lib/_openbabel.so --- [100%] Linking CXX shared module ../lib/_openbabel.so cd /construction/science/openbabel/.build/scripts && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/bindings_python.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -std=c++11 -O2 -DNDEBUG -shared -o ../lib/_openbabel.so CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libpython2.7.so ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz [100%] Built target bindings_python /usr/local/bin/cmake -E cmake_progress_start /construction/science/openbabel/.build/CMakeFiles 0 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> openbabel-2.4.1_1 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for openbabel-2.4.1_1 ===> Generating temporary packing list /usr/local/bin/cmake -H/construction/science/openbabel/openbabel-2.4.1 -B/construction/science/openbabel/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/openbabel/.build/CMakeFiles /construction/science/openbabel/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/openbabel.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build [ 11%] Built target openbabel /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build [ 12%] Built target plugin_fingerprints /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build [ 12%] Built target plugin_forcefields /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build [ 13%] Built target plugin_descriptors /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build [ 18%] Built target plugin_ops /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build [ 20%] Built target plugin_charges /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats/libinchi /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats/libinchi /construction/science/openbabel/.build/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build [ 26%] Built target inchi /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build [ 26%] Built target pubchem /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build [ 27%] Built target cdxmlformat /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 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src/formats/CMakeFiles/chemdrawcdx.dir/build [ 27%] Built target chemdrawcdx /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build [ 28%] Built target cmlformat /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 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/construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build [ 31%] Built target unichemformat /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build [ 32%] Built target thermoformat /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build [ 33%] Built target smileyformat /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build [ 33%] Built target shelxformat /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build [ 33%] Built target jaguarformat /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build [ 33%] Built target abinitformat /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build [ 33%] Built target exyzformat /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build [ 34%] Built target gausscubeformat /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build [ 35%] Built target gamessformat /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build [ 35%] Built target tinkerformat /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build [ 36%] Built target dmolformat /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build [ 37%] Built target xmlformat /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build [ 37%] Built target daltonformat /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build [ 38%] Built target pubchemjsonformat /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build [ 38%] Built target hinformat /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build [ 38%] Built target molreport /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build [ 38%] Built target cmlreactformat /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build [ 39%] Built target castepformat /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build [ 39%] Built target lpmdformat /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build [ 39%] Built target APIInterface /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build [ 39%] Built target nwchemformat /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build [ 39%] Built target mdlformat /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build [ 39%] Built target mopacformat /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build [ 40%] Built target gausszmatformat /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build [ 40%] Built target fhiaimsformat /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build [ 40%] Built target copyformat /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build [ 40%] Built target turbomoleformat /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build [ 41%] Built target mol2format /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build [ 41%] Built target amberformat /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build [ 41%] Built target CSRformat /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build [ 41%] Built target vaspformat /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build [ 42%] Built target aoforceformat /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build [ 43%] Built target pdbformat /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build [ 44%] Built target pwscfformat /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build [ 45%] Built target cssrformat /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build [ 45%] Built target povrayformat /usr/bin/make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/build [ 46%] Built target chemdoodlejsonformat /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build [ 46%] Built target MNAformat /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build [ 47%] Built target chemdrawct /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build [ 47%] Built target textformat /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build [ 48%] Built target fastaformat /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build [ 48%] Built target fpsformat /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build [ 49%] Built target siestaformat /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build [ 49%] Built target opendxformat /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build [ 50%] Built target viewmolformat /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build [ 51%] Built target svgformat /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build [ 51%] Built target cacaoformat /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build [ 51%] Built target xsfformat /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build [ 51%] Built target dlpolyformat /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build [ 51%] Built target gromos96format /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build [ 51%] Built target smilesformat /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build [ 51%] Built target yasaraformat /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build [ 51%] Built target reportformat /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build [ 52%] Built target bgfformat /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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src/formats/CMakeFiles/confabreport.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build [ 53%] Built target confabreport /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build [ 54%] Built target msiformat /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build [ 55%] Built target nulformat /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend cd 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/construction/science/openbabel/.build/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build [ 57%] Built target gulpformat /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build [ 58%] Built target adfformat /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build [ 58%] Built target pngformat /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build [ 59%] Built target acesformat /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build [ 59%] Built target qchemformat /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build [ 60%] Built target titleformat /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build [ 61%] Built target asciiformat /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build [ 61%] Built target cccformat /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build [ 61%] Built target pointcloudformat /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build [ 62%] Built target MCDLformat /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build [ 62%] Built target alchemyformat /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build [ 62%] Built target acrformat /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build [ 63%] Built target inchiformat /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build [ 63%] Built target balstformat /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build [ 63%] Built target outformat /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build [ 64%] Built target boxformat /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build [ 64%] Built target gamessukformat /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build [ 65%] Built target cacheformat /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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src/formats/CMakeFiles/chemtoolformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build [ 66%] Built target chemtoolformat /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build [ 67%] Built target fhformat /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build [ 68%] Built target painterformat /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build [ 68%] Built target cifformat /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build [ 69%] Built target crkformat /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build [ 69%] Built target fastsearchformat /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build [ 70%] Built target fingerprintformat /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build [ 70%] Built target freefracformat /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build [ 70%] Built target pcmodelformat /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build [ 71%] Built target fchkformat /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build [ 72%] Built target groformat /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build [ 72%] Built target gaussformat /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build [ 73%] Built target lmpdatformat /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build 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/construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build [ 77%] Built target mpqcformat /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build [ 80%] Built target molproformat /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obabel.dir/DependInfo.cmake /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build [ 83%] Built target obabel /usr/bin/make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools 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/construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/test /construction/science/openbabel/.build /construction/science/openbabel/.build/test /construction/science/openbabel/.build/test/CMakeFiles/roundtrip.dir/DependInfo.cmake /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build [ 91%] Built target roundtrip /usr/bin/make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-2.4.1 /construction/science/openbabel/openbabel-2.4.1/test /construction/science/openbabel/.build /construction/science/openbabel/.build/test /construction/science/openbabel/.build/test/CMakeFiles/test_runner.dir/DependInfo.cmake /usr/bin/make -f 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