=> Building science/gdma Started : Friday, 8 JUN 2018 at 05:26:09 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/construction/science/gdma XDG_CONFIG_HOME=/construction/science/gdma HOME=/construction/science/gdma TMPDIR="/tmp" PATH=/construction/science/gdma/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/construction/science/gdma XDG_CONFIG_HOME=/construction/science/gdma HOME=/construction/science/gdma TMPDIR="/tmp" PATH=/construction/science/gdma/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/gdma/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/gdma" EXAMPLESDIR="share/examples/gdma" DATADIR="share/gdma" WWWDIR="www/gdma" ETCDIR="etc/gdma" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gdma DOCSDIR=/usr/local/share/doc/gdma EXAMPLESDIR=/usr/local/share/examples/gdma WWWDIR=/usr/local/www/gdma ETCDIR=/usr/local/etc/gdma -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> gdma-2.2.6_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> gdma-2.2.6_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gdma-2.2.6_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by gdma-2.2.6_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by gdma-2.2.6_1 for building => SHA256 Checksum OK for psi4-gdma-v2.2.6_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by gdma-2.2.6_1 for building ===> Extracting for gdma-2.2.6_1 => SHA256 Checksum OK for psi4-gdma-v2.2.6_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for gdma-2.2.6_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> gdma-2.2.6_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.11.2.txz Installing cmake-3.11.2... `-- Installing curl-7.60.0... | `-- Installing ca_root_nss-3.37.1... | `-- Extracting ca_root_nss-3.37.1: ........ done | `-- Installing krb5-1.16.1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | | `-- Installing libressl-2.7.3... | | `-- Extracting libressl-2.7.3: .......... done | | `-- Installing pkgconf-1.4.2,1... | | `-- Extracting pkgconf-1.4.2,1: .......... done | | `-- Installing readline-7.0.3_1... | | `-- Installing ncurses-6.0.0s20171223_1... | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Extracting readline-7.0.3_1: .......... done | `-- Extracting krb5-1.16.1: .......... done | `-- Installing libnghttp2-1.32.0... | `-- Extracting libnghttp2-1.32.0: .......... done `-- Extracting curl-7.60.0: .......... done `-- Installing expat-2.2.5... `-- Extracting expat-2.2.5: .......... done `-- Installing jsoncpp-1.8.1_3... `-- Extracting jsoncpp-1.8.1_3: .......... done `-- Installing libarchive-3.3.2,1... | `-- Installing liblz4-1.8.2,1... | `-- Extracting liblz4-1.8.2,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.3.2,1: .......... done `-- Installing libuv-1.20.3... `-- Extracting libuv-1.20.3: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.11.2: .......... done Message from ca_root_nss-3.37.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> gdma-2.2.6_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of gdma-2.2.6_1 ===> gdma-2.2.6_1 depends on executable: gfortran5 - not found ===> Installing existing package /packages/All/gcc5-5.5.0_4.txz Installing gcc5-5.5.0_4... `-- Installing binutils-2.30_3,1... `-- Extracting binutils-2.30_3,1: .......... done `-- Installing gmp-6.1.2... `-- Extracting gmp-6.1.2: .......... done `-- Installing mpc-1.1.0_1... | `-- Installing mpfr-4.0.1... | `-- Extracting mpfr-4.0.1: .......... done `-- Extracting mpc-1.1.0_1: ......... done Extracting gcc5-5.5.0_4: .......... done Message from gcc5-5.5.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. ===> gdma-2.2.6_1 depends on executable: gfortran5 - found ===> Returning to build of gdma-2.2.6_1 ===> gdma-2.2.6_1 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for gdma-2.2.6_1 ===> Performing out-of-source build /bin/mkdir -p /construction/science/gdma/.build -- The Fortran compiler identification is GNU 5.5.0 -- The C compiler identification is GNU 5.4.1 -- Check for working Fortran compiler: /usr/local/bin/gfortran5 -- Check for working Fortran compiler: /usr/local/bin/gfortran5 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/local/bin/gfortran5 supports Fortran 90 -- Checking whether /usr/local/bin/gfortran5 supports Fortran 90 -- yes -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Setting option CMAKE_BUILD_TYPE: Release -- Setting option BUILD_SHARED_LIBS: ON -- Setting (unspecified) option BUILD_FPIC: ON -- Setting option ENABLE_OPENMP: ON -- Setting (unspecified) option ENABLE_GENERIC: OFF -- Setting option ENABLE_XHOST: OFF -- Found OpenMP_C: -fopenmp (found version "4.0") -- Found OpenMP_Fortran: -fopenmp (found version "4.0") -- Found OpenMP: TRUE (found version "4.0") -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_DEBUG CMAKE_EXE_LINKER_FLAGS CMAKE_MODULE_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/gdma/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for gdma-2.2.6_1 /usr/local/bin/cmake -H/construction/science/gdma/gdma-2.2.6 -B/construction/science/gdma/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/gdma/.build/CMakeFiles /construction/science/gdma/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/gdma.dir/all --- /usr/bin/make -f CMakeFiles/gdma.dir/build.make CMakeFiles/gdma.dir/depend --- CMakeFiles/gdma.dir/depend --- cd /construction/science/gdma/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/gdma/gdma-2.2.6 /construction/science/gdma/gdma-2.2.6 /construction/science/gdma/.build /construction/science/gdma/.build /construction/science/gdma/.build/CMakeFiles/gdma.dir/DependInfo.cmake Scanning dependencies of target gdma /usr/bin/make -f CMakeFiles/gdma.dir/build.make CMakeFiles/gdma.dir/build --- CMakeFiles/gdma.dir/src/atom_grids.f90.o --- --- CMakeFiles/gdma.dir/src/input.F90.o --- --- CMakeFiles/gdma.dir/src/timing.F90.o --- --- CMakeFiles/gdma.dir/src/atom_grids.f90.o --- [ 50%] Building Fortran object CMakeFiles/gdma.dir/src/atom_grids.f90.o --- CMakeFiles/gdma.dir/src/input.F90.o --- [ 50%] Building Fortran object CMakeFiles/gdma.dir/src/input.F90.o --- CMakeFiles/gdma.dir/src/timing.F90.o --- [ 50%] Building Fortran object CMakeFiles/gdma.dir/src/timing.F90.o /usr/local/bin/gfortran5 -DHAVE_OPENMP -Dgdma_EXPORTS -O -Wl,-rpath=/usr/local/lib/gcc5 -fopenmp -O3 -DNDEBUG -O3 -fPIC -c /construction/science/gdma/gdma-2.2.6/src/timing.F90 -o CMakeFiles/gdma.dir/src/timing.F90.o --- CMakeFiles/gdma.dir/src/atom_grids.f90.o --- /usr/local/bin/gfortran5 -DHAVE_OPENMP -Dgdma_EXPORTS -O -Wl,-rpath=/usr/local/lib/gcc5 -fopenmp -O3 -DNDEBUG -O3 -fPIC -c /construction/science/gdma/gdma-2.2.6/src/atom_grids.f90 -o CMakeFiles/gdma.dir/src/atom_grids.f90.o --- CMakeFiles/gdma.dir/src/input.F90.o --- /usr/local/bin/gfortran5 -DHAVE_OPENMP -Dgdma_EXPORTS -O -Wl,-rpath=/usr/local/lib/gcc5 -fopenmp -O3 -DNDEBUG -O3 -fPIC -c /construction/science/gdma/gdma-2.2.6/src/input.F90 -o CMakeFiles/gdma.dir/src/input.F90.o --- CMakeFiles/gdma.dir/timing.mod.stamp --- /usr/local/bin/cmake -E cmake_copy_f90_mod timing CMakeFiles/gdma.dir/timing.mod.stamp GNU --- CMakeFiles/gdma.dir/src/timing.F90.o.provides.build --- /usr/local/bin/cmake -E touch CMakeFiles/gdma.dir/src/timing.F90.o.provides.build --- CMakeFiles/gdma.dir/input.mod.stamp --- /usr/local/bin/cmake -E cmake_copy_f90_mod input CMakeFiles/gdma.dir/input.mod.stamp GNU --- CMakeFiles/gdma.dir/src/input.F90.o.provides.build --- /usr/local/bin/cmake -E touch CMakeFiles/gdma.dir/src/input.F90.o.provides.build --- CMakeFiles/gdma.dir/atom_grids.mod.stamp --- /usr/local/bin/cmake -E cmake_copy_f90_mod atom_grids CMakeFiles/gdma.dir/atom_grids.mod.stamp GNU --- CMakeFiles/gdma.dir/src/atom_grids.f90.o.provides.build --- --- CMakeFiles/gdma.dir/src/dma.f90.o --- --- CMakeFiles/gdma.dir/src/atom_grids.f90.o.provides.build --- /usr/local/bin/cmake -E touch CMakeFiles/gdma.dir/src/atom_grids.f90.o.provides.build --- CMakeFiles/gdma.dir/src/dma.f90.o --- [ 66%] Building Fortran object CMakeFiles/gdma.dir/src/dma.f90.o /usr/local/bin/gfortran5 -DHAVE_OPENMP -Dgdma_EXPORTS -O -Wl,-rpath=/usr/local/lib/gcc5 -fopenmp -O3 -DNDEBUG -O3 -fPIC -c /construction/science/gdma/gdma-2.2.6/src/dma.f90 -o CMakeFiles/gdma.dir/src/dma.f90.o --- CMakeFiles/gdma.dir/dma.mod.stamp --- /usr/local/bin/cmake -E cmake_copy_f90_mod dma CMakeFiles/gdma.dir/dma.mod.stamp GNU --- CMakeFiles/gdma.dir/src/dma.f90.o.provides.build --- --- CMakeFiles/gdma.dir/src/gdma.f90.o --- --- CMakeFiles/gdma.dir/src/dma.f90.o.provides.build --- /usr/local/bin/cmake -E touch CMakeFiles/gdma.dir/src/dma.f90.o.provides.build --- CMakeFiles/gdma.dir/src/gdma.f90.o --- [ 83%] Building Fortran object CMakeFiles/gdma.dir/src/gdma.f90.o /usr/local/bin/gfortran5 -DHAVE_OPENMP -Dgdma_EXPORTS -O -Wl,-rpath=/usr/local/lib/gcc5 -fopenmp -O3 -DNDEBUG -O3 -fPIC -c /construction/science/gdma/gdma-2.2.6/src/gdma.f90 -o CMakeFiles/gdma.dir/src/gdma.f90.o --- CMakeFiles/gdma.dir/gdma.mod.stamp --- --- libgdma.so --- --- CMakeFiles/gdma.dir/gdma.mod.stamp --- /usr/local/bin/cmake -E cmake_copy_f90_mod gdma CMakeFiles/gdma.dir/gdma.mod.stamp GNU --- libgdma.so --- [100%] Linking Fortran shared library libgdma.so /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gdma.dir/link.txt --verbose=1 --- CMakeFiles/gdma.dir/src/gdma.f90.o.provides.build --- /usr/local/bin/cmake -E touch CMakeFiles/gdma.dir/src/gdma.f90.o.provides.build --- libgdma.so --- /usr/local/bin/gfortran5 -fPIC -O -Wl,-rpath=/usr/local/lib/gcc5 -fopenmp -O3 -DNDEBUG -O3 -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -shared -Wl,-soname,libgdma.so -o libgdma.so CMakeFiles/gdma.dir/src/atom_grids.f90.o CMakeFiles/gdma.dir/src/dma.f90.o CMakeFiles/gdma.dir/src/gdma.f90.o CMakeFiles/gdma.dir/src/input.F90.o CMakeFiles/gdma.dir/src/timing.F90.o [100%] Built target gdma /usr/local/bin/cmake -E cmake_progress_start /construction/science/gdma/.build/CMakeFiles 0 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> gdma-2.2.6_1 depends on executable: gfortran5 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for gdma-2.2.6_1 ===> Generating temporary packing list /usr/local/bin/cmake -H/construction/science/gdma/gdma-2.2.6 -B/construction/science/gdma/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/gdma/.build/CMakeFiles /construction/science/gdma/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/gdma.dir/build.make CMakeFiles/gdma.dir/depend cd /construction/science/gdma/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/gdma/gdma-2.2.6 /construction/science/gdma/gdma-2.2.6 /construction/science/gdma/.build /construction/science/gdma/.build /construction/science/gdma/.build/CMakeFiles/gdma.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/gdma.dir/build.make CMakeFiles/gdma.dir/build [100%] Built target gdma /usr/local/bin/cmake -E cmake_progress_start /construction/science/gdma/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /construction/science/gdma/stage/usr/local/include/GDMA/GDMA_MANGLE.h -- Installing: /construction/science/gdma/stage/usr/local/lib/libgdma.so -- Installing: /construction/science/gdma/stage/usr/local/share/cmake/gdma/gdmaConfig.cmake -- Installing: /construction/science/gdma/stage/usr/local/share/cmake/gdma/gdmaConfigVersion.cmake -- Installing: /construction/science/gdma/stage/usr/local/share/cmake/gdma/gdmaTargets.cmake -- Installing: /construction/science/gdma/stage/usr/local/share/cmake/gdma/gdmaTargets-release.cmake ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for gdma-2.2.6_1 file sizes/checksums [9]: . done packing files [9]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 8 JUN 2018 at 05:27:38 UTC Duration: 00:01:28