=> Building science/dlpoly-classic Started : Saturday, 21 JUL 2018 at 22:15:27 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for dlpolyclassic-1.8_14: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples GUI=on: Install Java GUI ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" MAKE=gmake XDG_DATA_HOME=/construction/science/dlpoly-classic XDG_CONFIG_HOME=/construction/science/dlpoly-classic HOME=/construction/science/dlpoly-classic TMPDIR="/tmp" PATH=/construction/science/dlpoly-classic/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/construction/science/dlpoly-classic XDG_CONFIG_HOME=/construction/science/dlpoly-classic HOME=/construction/science/dlpoly-classic TMPDIR="/tmp" PATH=/construction/science/dlpoly-classic/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/dlpoly-classic/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/dlpoly" EXAMPLESDIR="share/examples/dlpoly" DATADIR="share/dlpoly" WWWDIR="www/dlpoly" ETCDIR="etc/dlpoly" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/dlpoly DOCSDIR=/usr/local/share/doc/dlpoly EXAMPLESDIR=/usr/local/share/examples/dlpoly WWWDIR=/usr/local/www/dlpoly ETCDIR=/usr/local/etc/dlpoly -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> dlpolyclassic-1.8_14 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> dlpolyclassic-1.8_14 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of dlpolyclassic-1.8_14 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> Fetching all distfiles required by dlpolyclassic-1.8_14 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by dlpolyclassic-1.8_14 for building => SHA256 Checksum OK for dl_class_1.8.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by dlpolyclassic-1.8_14 for building ===> Extracting for dlpolyclassic-1.8_14 => SHA256 Checksum OK for dl_class_1.8.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for dlpolyclassic-1.8_14 /bin/cp /construction/science/dlpoly-classic/dl_class_1.8/build/MakePAR /construction/science/dlpoly-classic/dl_class_1.8/build/MakeSEQ /construction/science/dlpoly-classic/dl_class_1.8/source /usr/bin/sed -i.bak 's|gfortran|gfortran5|g' /construction/science/dlpoly-classic/dl_class_1.8/source/MakeSEQ /usr/bin/sed -i.bak 's|DLPOLY\.X|dlpoly-classic|g' /construction/science/dlpoly-classic/dl_class_1.8/source/MakeSEQ /usr/bin/sed -i.bak 's|mpif90|/usr/local/mpi/openmpi/bin/mpif90|g' /construction/science/dlpoly-classic/dl_class_1.8/source/MakePAR /usr/bin/sed -i.bak 's|DLPOLY\.X|dlpoly-classic-mpi|g' /construction/science/dlpoly-classic/dl_class_1.8/source/MakePAR -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> dlpolyclassic-1.8_14 depends on file: /usr/local/mpi/openmpi/bin/mpif90 - not found ===> Installing existing package /packages/All/openmpi-1.10.7_2.txz Installing openmpi-1.10.7_2... `-- Installing gcc5-5.5.0_4... | `-- Installing binutils-2.30_3,1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Extracting binutils-2.30_3,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0_1... | | `-- Installing mpfr-4.0.1... | | `-- Extracting mpfr-4.0.1: .......... done | `-- Extracting mpc-1.1.0_1: ......... done `-- Extracting gcc5-5.5.0_4: .......... done `-- Installing hwloc-1.11.7_2... | `-- Installing libpciaccess-0.13.5... | | `-- Installing pciids-20180428... | | `-- Extracting pciids-20180428: ..... done | `-- Extracting libpciaccess-0.13.5: ......... done | `-- Installing libxml2-2.9.7... | `-- Extracting libxml2-2.9.7: .......... done `-- Extracting hwloc-1.11.7_2: .......... done `-- Installing libevent-2.1.8_1... | `-- Installing libressl-2.7.4... | `-- Extracting libressl-2.7.4: .......... done `-- Extracting libevent-2.1.8_1: .......... done `-- Installing libltdl-2.4.6... `-- Extracting libltdl-2.4.6: .......... done Extracting openmpi-1.10.7_2: .......... done Message from gcc5-5.5.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. ===> dlpolyclassic-1.8_14 depends on file: /usr/local/mpi/openmpi/bin/mpif90 - found ===> Returning to build of dlpolyclassic-1.8_14 ===> dlpolyclassic-1.8_14 depends on file: /usr/local/openjdk8/bin/java - not found ===> Installing existing package /packages/All/openjdk8-8.172.11_1.txz Installing openjdk8-8.172.11_1... `-- Installing alsa-lib-1.1.2_1... `-- Extracting alsa-lib-1.1.2_1: .......... done `-- Installing dejavu-2.37... | `-- Installing fontconfig-2.12.6,1... | | `-- Installing expat-2.2.5... | | `-- Extracting expat-2.2.5: .......... done | | `-- Installing freetype2-2.9.1... | | `-- Extracting freetype2-2.9.1: .......... done | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | `-- Installing mkfontdir-1.0.7... | | `-- Installing mkfontscale-1.1.3... | | `-- Installing libfontenc-1.1.3_1... | | | `-- Installing xproto-7.0.31... | | | `-- Extracting xproto-7.0.31: .......... done | | `-- Extracting libfontenc-1.1.3_1: ......... done | | `-- Extracting mkfontscale-1.1.3: ..... done | `-- Extracting mkfontdir-1.0.7: ..... done `-- Extracting dejavu-2.37: .......... done `-- Installing giflib-5.1.4... `-- Extracting giflib-5.1.4: .......... done `-- Installing java-zoneinfo-2018.e... `-- Extracting java-zoneinfo-2018.e: .......... done `-- Installing javavmwrapper-2.6... `-- Extracting javavmwrapper-2.6: .......... done `-- Installing libX11-1.6.5,1... | `-- Installing kbproto-1.0.7... | `-- Extracting kbproto-1.0.7: .......... done | `-- Installing libXau-1.0.8_3... | `-- Extracting libXau-1.0.8_3: .......... done | `-- Installing libXdmcp-1.1.2... | `-- Extracting libXdmcp-1.1.2: ......... done | `-- Installing libxcb-1.13... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: .... done | `-- Extracting libxcb-1.13: .......... done `-- Extracting libX11-1.6.5,1: .......... done `-- Installing libXext-1.3.3_1,1... | `-- Installing xextproto-7.3.0... | `-- Extracting xextproto-7.3.0: .......... done `-- Extracting libXext-1.3.3_1,1: .......... done `-- Installing libXi-1.7.9,1... | `-- Installing inputproto-2.3.2... | `-- Extracting inputproto-2.3.2: ........ done | `-- Installing libXfixes-5.0.3... | | `-- Installing fixesproto-5.0... | | `-- Extracting fixesproto-5.0: .... done | `-- Extracting libXfixes-5.0.3: .......... done `-- Extracting libXi-1.7.9,1: .......... done `-- Installing libXrender-0.9.10... | `-- Installing renderproto-0.11.1... | `-- Extracting renderproto-0.11.1: .... done `-- Extracting libXrender-0.9.10: .......... done `-- Installing libXt-1.1.5,1... | `-- Installing libICE-1.0.9_1,1... | `-- Extracting libICE-1.0.9_1,1: .......... done | `-- Installing libSM-1.2.2_3,1... | `-- Extracting libSM-1.2.2_3,1: .......... done `-- Extracting libXt-1.1.5,1: .......... done `-- Installing libXtst-1.2.3... | `-- Installing recordproto-1.14.2... | `-- Extracting recordproto-1.14.2: .... done `-- Extracting libXtst-1.2.3: .......... done Extracting openjdk8-8.172.11_1: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from openjdk8-8.172.11_1: ====================================================================== This OpenJDK implementation requires procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following line in /etc/fstab: proc /proc procfs rw 0 0 ====================================================================== ===> dlpolyclassic-1.8_14 depends on file: /usr/local/openjdk8/bin/java - found ===> Returning to build of dlpolyclassic-1.8_14 ===> dlpolyclassic-1.8_14 depends on executable: gfortran5 - found ===> dlpolyclassic-1.8_14 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_2.txz Installing gmake-4.2.1_2... Extracting gmake-4.2.1_2: .......... done ===> dlpolyclassic-1.8_14 depends on executable: gmake - found ===> Returning to build of dlpolyclassic-1.8_14 ===> dlpolyclassic-1.8_14 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for dlpolyclassic-1.8_14 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for dlpolyclassic-1.8_14 (cd /construction/science/dlpoly-classic/dl_class_1.8/source && /bin/cp -f MakeSEQ Makefile && /usr/bin/make gfortran5) /usr/bin/make LD="gfortran5 -o" LDFLAGS="" FC=gfortran5 FFLAGS="-c -O2 -ffast-math" EX=dlpoly-classic BINROOT=../execute seq gfortran5 -c -O2 -ffast-math parse_module.f gfortran5 -c -O2 -ffast-math setup_module.f gfortran5 -c -O2 -ffast-math error_module.f gfortran5 -c -O2 -ffast-math site_module.f gfortran5 -c -O2 -ffast-math config_module.f gfortran5 -c -O2 -ffast-math pair_module.f gfortran5 -c -O2 -ffast-math utility_module.f gfortran5 -c -O2 -ffast-math metafreeze_module.f gfortran5 -c -O2 -ffast-math solvation_module.f gfortran5 -c -O2 -ffast-math tether_module.f gfortran5 -c -O2 -ffast-math vdw_module.f gfortran5 -c -O2 -ffast-math property_module.f gfortran5 -c -O2 -ffast-math rigid_body_module.f gfortran5 -c -O2 -ffast-math angles_module.f gfortran5 -c -O2 -ffast-math bonds_module.f gfortran5 -c -O2 -ffast-math shake_module.f gfortran5 -c -O2 -ffast-math inversion_module.f gfortran5 -c -O2 -ffast-math dihedral_module.f gfortran5 -c -O2 -ffast-math core_shell_module.f gfortran5 -c -O2 -ffast-math exclude_module.f gfortran5 -c -O2 -ffast-math ewald_module.f gfortran5 -c -O2 -ffast-math coulomb_module.f gfortran5 -c -O2 -ffast-math external_field_module.f gfortran5 -c -O2 -ffast-math four_body_module.f gfortran5 -c -O2 -ffast-math hkewald_module.f gfortran5 -c -O2 -ffast-math metal_module.f gfortran5 -c -O2 -ffast-math ensemble_tools_module.f gfortran5 -c -O2 -ffast-math temp_scalers_module.f gfortran5 -c -O2 -ffast-math three_body_module.f gfortran5 -c -O2 -ffast-math spme_module.f gfortran5 -c -O2 -ffast-math tersoff_module.f gfortran5 -c -O2 -ffast-math neu_coul_module.f gfortran5 -c -O2 -ffast-math nlist_builders_module.f gfortran5 -c -O2 -ffast-math forces_module.f gfortran5 -c -O2 -ffast-math lf_motion_module.f gfortran5 -c -O2 -ffast-math lf_rotation1_module.f gfortran5 -c -O2 -ffast-math lf_rotation2_module.f gfortran5 -c -O2 -ffast-math vv_motion_module.f gfortran5 -c -O2 -ffast-math vv_rotation1_module.f gfortran5 -c -O2 -ffast-math vv_rotation2_module.f gfortran5 -c -O2 -ffast-math pmf_module.f gfortran5 -c -O2 -ffast-math integrator_module.f gfortran5 -c -O2 -ffast-math optimiser_module.f gfortran5 -c -O2 -ffast-math hyper_dynamics_module.f gfortran5 -c -O2 -ffast-math driver_module.f gfortran5 -c -O2 -ffast-math define_system_module.f gfortran5 -c -O2 -ffast-math serial.f gfortran5 -c -O2 -ffast-math dlpoly.f gfortran5 -o dlpoly-classic parse_module.o setup_module.o error_module.o site_module.o config_module.o pair_module.o utility_module.o metafreeze_module.o solvation_module.o tether_module.o vdw_module.o property_module.o rigid_body_module.o angles_module.o bonds_module.o shake_module.o inversion_module.o dihedral_module.o core_shell_module.o exclude_module.o ewald_module.o coulomb_module.o external_field_module.o four_body_module.o hkewald_module.o metal_module.o ensemble_tools_module.o temp_scalers_module.o three_body_module.o spme_module.o tersoff_module.o neu_coul_module.o nlist_builders_module.o forces_module.o lf_motion_module.o lf_rotation1_module.o lf_rotation2_module.o vv_motion_module.o vv_rotation1_module.o vv_rotation2_module.o pmf_module.o integrator_module.o optimiser_module.o hyper_dynamics_module.o driver_module.o define_system_module.o serial.o dlpoly.o mv dlpoly-classic ../execute/dlpoly-classic (cd /construction/science/dlpoly-classic/dl_class_1.8/source && /usr/bin/make clean && /bin/cp -f MakePAR Makefile && /usr/bin/make gfortran) rm -f parse_module.o setup_module.o error_module.o site_module.o config_module.o pair_module.o utility_module.o metafreeze_module.o solvation_module.o tether_module.o vdw_module.o property_module.o rigid_body_module.o angles_module.o bonds_module.o shake_module.o inversion_module.o dihedral_module.o core_shell_module.o exclude_module.o ewald_module.o coulomb_module.o external_field_module.o four_body_module.o hkewald_module.o metal_module.o ensemble_tools_module.o temp_scalers_module.o three_body_module.o spme_module.o tersoff_module.o neu_coul_module.o nlist_builders_module.o forces_module.o lf_motion_module.o lf_rotation1_module.o lf_rotation2_module.o vv_motion_module.o vv_rotation1_module.o vv_rotation2_module.o pmf_module.o integrator_module.o optimiser_module.o hyper_dynamics_module.o driver_module.o define_system_module.o serial.o dlpoly.o *.mod /usr/bin/make FC="/usr/local/mpi/openmpi/bin/mpif90" LD="/usr/local/mpi/openmpi/bin/mpif90 -o" LDFLAGS="-O2 -ffast-math" FFLAGS="-c -O2 -ffast-math" EX=dlpoly-classic-mpi BINROOT=../execute par /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math parse_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math setup_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math error_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math site_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math config_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math pair_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math utility_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math metafreeze_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math solvation_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math tether_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vdw_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math property_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math rigid_body_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math angles_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math bonds_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math shake_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math inversion_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math dihedral_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math core_shell_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math exclude_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math ewald_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math coulomb_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math external_field_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math four_body_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math hkewald_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math metal_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math ensemble_tools_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math temp_scalers_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math three_body_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math spme_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math tersoff_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math neu_coul_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math nlist_builders_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math forces_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math lf_motion_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math lf_rotation1_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math lf_rotation2_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vv_motion_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vv_rotation1_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vv_rotation2_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math pmf_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math integrator_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math optimiser_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math hyper_dynamics_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math driver_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math define_system_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math basic_comms.f basic_comms.f:318:17: call gisum(i,1,idum) 1 Warning: Rank mismatch in argument 'aaa' at (1) (rank-1 and scalar) /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math merge_tools.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math pass_tools.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math dlpoly.f /usr/local/mpi/openmpi/bin/mpif90 -o dlpoly-classic-mpi -O2 -ffast-math parse_module.o setup_module.o error_module.o site_module.o config_module.o pair_module.o utility_module.o metafreeze_module.o solvation_module.o tether_module.o vdw_module.o property_module.o rigid_body_module.o angles_module.o bonds_module.o shake_module.o inversion_module.o dihedral_module.o core_shell_module.o exclude_module.o ewald_module.o coulomb_module.o external_field_module.o four_body_module.o hkewald_module.o metal_module.o ensemble_tools_module.o temp_scalers_module.o three_body_module.o spme_module.o tersoff_module.o neu_coul_module.o nlist_builders_module.o forces_module.o lf_motion_module.o lf_rotation1_module.o lf_rotation2_module.o vv_motion_module.o vv_rotation1_module.o vv_rotation2_module.o pmf_module.o integrator_module.o optimiser_module.o hyper_dynamics_module.o driver_module.o define_system_module.o basic_comms.o merge_tools.o pass_tools.o dlpoly.o mv dlpoly-classic-mpi ../execute/dlpoly-classic-mpi -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> dlpolyclassic-1.8_14 depends on file: /usr/local/mpi/openmpi/bin/mpirun - found ===> dlpolyclassic-1.8_14 depends on file: /usr/local/openjdk8/bin/java - found ===> dlpolyclassic-1.8_14 depends on executable: gfortran5 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for dlpolyclassic-1.8_14 ===> Generating temporary packing list install -s -m 555 /construction/science/dlpoly-classic/dl_class_1.8/execute/dlpoly-classic /construction/science/dlpoly-classic/stage/usr/local/bin install -s -m 555 /construction/science/dlpoly-classic/dl_class_1.8/execute/dlpoly-classic-mpi /construction/science/dlpoly-classic/stage/usr/local/bin install -m 0644 /construction/science/dlpoly-classic/dl_class_1.8/manual/* /construction/science/dlpoly-classic/stage/usr/local/share/doc/dlpoly /bin/cp -R /construction/science/dlpoly-classic/dl_class_1.8/execute /construction/science/dlpoly-classic/stage/usr/local/share/examples/dlpoly /bin/rm -f /construction/science/dlpoly-classic/stage/usr/local/share/examples/dlpoly/execute/dlpoly* install -m 0644 /construction/science/dlpoly-classic/dl_class_1.8/java/GUI.jar /construction/science/dlpoly-classic/stage/usr/local/share/dlpoly install -m 555 /construction/science/dlpoly-classic/dlpoly-gui /construction/science/dlpoly-classic/stage/usr/local/bin ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for dlpolyclassic-1.8_14 file sizes/checksums [13]: . done packing files [13]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 21 JUL 2018 at 22:21:13 UTC Duration: 00:05:46