=> Building science/antioch Started : Saturday, 21 JUL 2018 at 22:10:45 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/science/antioch XDG_CONFIG_HOME=/construction/science/antioch HOME=/construction/science/antioch TMPDIR="/tmp" PATH=/construction/science/antioch/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- --disable-static --enable-eigen --with-eigen-include=/usr/local/include/eigen3 --enable-opencl --with-metaphysicl=/usr/local --with-viennacl=/usr/local/include --with-gsl=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/antioch XDG_CONFIG_HOME=/construction/science/antioch HOME=/construction/science/antioch TMPDIR="/tmp" PATH=/construction/science/antioch/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS="" LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/antioch/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/antioch" EXAMPLESDIR="share/examples/antioch" DATADIR="share/antioch" WWWDIR="www/antioch" ETCDIR="etc/antioch" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/antioch DOCSDIR=/usr/local/share/doc/antioch EXAMPLESDIR=/usr/local/share/examples/antioch WWWDIR=/usr/local/www/antioch ETCDIR=/usr/local/etc/antioch -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License LGPL21 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> antioch-0.4.0.156_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> antioch-0.4.0.156_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of antioch-0.4.0.156_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by antioch-0.4.0.156_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by antioch-0.4.0.156_1 for building => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by antioch-0.4.0.156_1 for building ===> Extracting for antioch-0.4.0.156_1 => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for antioch-0.4.0.156_1 ===> Applying ports patches for antioch-0.4.0.156_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> antioch-0.4.0.156_1 depends on file: /usr/local/include/metaphysicl/metaphysicl_version.h - not found ===> Installing existing package /packages/All/MetaPhysicL-0.2.0.23.txz Installing MetaPhysicL-0.2.0.23... Extracting MetaPhysicL-0.2.0.23: .......... done ===> antioch-0.4.0.156_1 depends on file: /usr/local/include/metaphysicl/metaphysicl_version.h - found ===> Returning to build of antioch-0.4.0.156_1 ===> antioch-0.4.0.156_1 depends on file: /usr/local/include/viennacl/vector.hpp - not found ===> Installing existing package /packages/All/viennacl-1.7.1_2.txz Installing viennacl-1.7.1_2... `-- Installing ocl-icd-2.2.12... `-- Extracting ocl-icd-2.2.12: .......... done `-- Installing opencl-2.2... `-- Extracting opencl-2.2: .......... done Extracting viennacl-1.7.1_2: .......... done Message from opencl-2.2: OpenCL is the first open, royalty-free standard for cross-platform, parallel programming of modern processors. ===> antioch-0.4.0.156_1 depends on file: /usr/local/include/viennacl/vector.hpp - found ===> Returning to build of antioch-0.4.0.156_1 ===> antioch-0.4.0.156_1 depends on package: autoconf>=2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_1.txz Installing autoconf-2.69_1... `-- Installing autoconf-wrapper-20131203... `-- Extracting autoconf-wrapper-20131203: .......... done `-- Installing indexinfo-0.3.1... `-- Extracting indexinfo-0.3.1: .... done `-- Installing m4-1.4.18,1... `-- Extracting m4-1.4.18,1: .......... done `-- Installing perl5-5.26.2... `-- Extracting perl5-5.26.2: .......... done Extracting autoconf-2.69_1: .......... done Message from perl5-5.26.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> antioch-0.4.0.156_1 depends on package: autoconf>=2.69 - found ===> Returning to build of antioch-0.4.0.156_1 ===> antioch-0.4.0.156_1 depends on package: automake>=1.16.1 - not found ===> Installing existing package /packages/All/automake-1.16.1.txz Installing automake-1.16.1... Extracting automake-1.16.1: .......... done ===> antioch-0.4.0.156_1 depends on package: automake>=1.16.1 - found ===> Returning to build of antioch-0.4.0.156_1 ===> antioch-0.4.0.156_1 depends on executable: libtoolize - not found ===> Installing existing package /packages/All/libtool-2.4.6.txz Installing libtool-2.4.6... Extracting libtool-2.4.6: .......... done ===> antioch-0.4.0.156_1 depends on executable: libtoolize - found ===> Returning to build of antioch-0.4.0.156_1 ===> antioch-0.4.0.156_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.3.4.txz Installing eigen-3.3.4... Extracting eigen-3.3.4: .......... done ===> antioch-0.4.0.156_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of antioch-0.4.0.156_1 ===> antioch-0.4.0.156_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_2.txz Installing gmake-4.2.1_2... `-- Installing gettext-runtime-0.19.8.1_1... `-- Extracting gettext-runtime-0.19.8.1_1: .......... done Extracting gmake-4.2.1_2: .......... done ===> antioch-0.4.0.156_1 depends on executable: gmake - found ===> Returning to build of antioch-0.4.0.156_1 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> antioch-0.4.0.156_1 depends on shared library: libgsl.so - not found ===> Installing existing package /packages/All/gsl-2.5.txz Installing gsl-2.5... Extracting gsl-2.5: .......... done ===> antioch-0.4.0.156_1 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> Returning to build of antioch-0.4.0.156_1 ===> antioch-0.4.0.156_1 depends on shared library: libOpenCL.so - found (/usr/local/lib/libOpenCL.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for antioch-0.4.0.156_1 libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:21: installing 'build-aux/compile' configure.ac:17: installing 'build-aux/config.guess' configure.ac:17: installing 'build-aux/config.sub' configure.ac:18: installing 'build-aux/install-sh' configure.ac:18: installing 'build-aux/missing' examples/Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' configure: loading site script /xports/Templates/config.site checking build system type... x86_64-portbld-dragonfly5.2 checking host system type... x86_64-portbld-dragonfly5.2 checking target system type... x86_64-portbld-dragonfly5.2 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... 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PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for Boost headers version >= 1.47.0... no configure: cannot find Boost headers version >= 1.47.0 checking for the toolset name used by Boost for c++... unknown checking for the flags needed to use pthreads... -pthread configure: /vexcl/vexcl.hpp not found configure: /include/vexcl/vexcl.hpp not found checking whether we are using the Microsoft C++ compiler... no checking CL/cl.h usability... yes checking CL/cl.h presence... yes checking for CL/cl.h... yes checking OpenCL/cl.h usability... no checking OpenCL/cl.h presence... no checking for OpenCL/cl.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for OpenCL library... -lOpenCL test: -ge: unexpected operator configure: Boost not available, not searching for the Boost chrono library configure: Boost not available, not searching for the Boost date_time library test: -ge: unexpected operator configure: Boost not available, not searching for the Boost filesystem library configure: Boost not available, not searching for the Boost system library test: -ge: unexpected operator test: -lt: unexpected operator configure: Boost not available, not searching for the Boost thread library checking whether we are using the Microsoft C++ compiler... (cached) no checking for CL/cl.h... (cached) yes checking for OpenCL/cl.h... (cached) no checking for windows.h... (cached) no checking for OpenCL library... (cached) -lOpenCL checking vexcl/vexcl.hpp usability... no checking vexcl/vexcl.hpp presence... no checking for vexcl/vexcl.hpp... no configure: optional VEXCL library not found checking whether c++ supports C++11 features by default... no checking whether c++ supports C++11 features with -std=c++11... yes checking viennacl/vector.hpp usability... yes checking viennacl/vector.hpp presence... yes checking for viennacl/vector.hpp... yes checking whether we are using the Microsoft C++ compiler... (cached) no checking for CL/cl.h... (cached) yes checking for OpenCL/cl.h... (cached) no checking for windows.h... (cached) no checking for OpenCL library... (cached) -lOpenCL configure: Boost not available, not searching for boost/numeric/ublas/vector.hpp checking /usr/local/include/eigen3/Eigen/Eigen usability... yes checking /usr/local/include/eigen3/Eigen/Eigen presence... yes checking for /usr/local/include/eigen3/Eigen/Eigen... yes checking Eigen/Dense usability... yes checking Eigen/Dense presence... yes checking for Eigen/Dense... yes checking for eigen - version >= 3.1.2... yes <<< Configuring library with Eigen support >>> checking metaphysicl/metaphysicl_version.h usability... yes checking metaphysicl/metaphysicl_version.h presence... yes checking for metaphysicl/metaphysicl_version.h... yes checking for metaphysicl - version >= 0.0.0... yes checking for -lmetaphysicl linkage... yes checking grvy.h usability... no checking grvy.h presence... no checking for grvy.h... no configure: optional GRVY library not found checking for gsl-config... /usr/local/bin/gsl-config checking for gsl - version >= 1.10... yes checking gsl/gsl_math.h usability... yes checking gsl/gsl_math.h presence... yes checking for gsl/gsl_math.h... yes checking for -lgsl linkage... checking for gsl_sf_gamma in -lgsl... yes checking for cppunit-config... no checking for Cppunit - version >= 1.10.0... no checking whether c++ supports C++11 features by default... (cached) no checking whether c++ supports C++11 features with -std=c++11... (cached) yes checking whether c++ supports C++11 -> decltype(this->f())... no configure: No compiler supporting trailing decltype(this->f()) was found checking for C++11 static_assert support... yes checking for git... no checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/local/bin/perl find: /construction/science/antioch/antioch-0.4.0-156-g90ffa43/{src,test}: No such file or directory checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating doxygen/txt_common/about_vpath.page config.status: creating test/kinetics_unit_air_5sp.sh config.status: creating test/kinetics_unit_thrust_air_5sp.sh config.status: creating test/kinetics_vec_unit_air_5sp.sh config.status: creating test/kinetics_regression_air_5sp.sh config.status: creating test/kinetics_regression_vec_air_5sp.sh config.status: creating test/photochemical_rate_unit.sh config.status: creating test/parsing_xml.sh config.status: creating test/fail_parsing_xml_1.sh config.status: creating test/fail_parsing_xml_2.sh config.status: creating test/parsing_chemkin.sh config.status: creating test/kinetics_reactive_scheme_unit.sh config.status: creating test/nasa_evaluator_unit.sh config.status: creating test/ascii_parser_unit.sh config.status: creating test/kinetics_partial_order_unit.sh config.status: creating src/utilities/include/antioch/antioch_version.h config.status: creating antioch.pc config.status: creating doxygen/Makefile config.status: creating doxygen/antioch.dox config.status: creating Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating examples/Makefile config.status: creating antioch_config.h.tmp config.status: executing antioch_config.h commands config.status: creating antioch_config.h - prefix ANTIOCH for antioch_config.h.tmp defines config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------- SUMMARY ----------------------------------- Package version............... : antioch-0.5.0 C++ compiler.................. : c++ C++ compiler flags............ : -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 Install dir................... : /usr/local Build user.................... : root Build host.................... : pkgbox64.dragonflybsd.org Configure date................ : 2018-07-21 22:11 Build architecture............ : x86_64-portbld-dragonfly5.2 Revision id................... : external Testing Options: Number of tuples............ : 2 CPPUnit..................... : no Optional Libraries: Eigen....................... : yes MetaPhysicL................. : yes METAPHYSICL_CPPFLAGS...... : -I/usr/local/include -I/usr/local/src METAPHYSICL_LDFLAGS....... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib METAPHYSICL_LIBS.......... : -lmetaphysicl VexCL....................... : no ViennaCL.................... : yes VIENNACL_CPPFLAGS......... : -I/usr/local/include -pthread -pthread VIENNACL_LDFLAGS.......... : VIENNACL_LIBS............. : -lOpenCL -lm GRVY........................ : no GSL......................... : yes GSL_CPPFLAGS.............. : -I/usr/local/include GSL_LDFLAGS............... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib GSL_LIBS.................. : -lgsl -lgslcblas ------------------------------------------------------------------------------- Configure complete, now type 'make' and then 'make install'. -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for antioch-0.4.0.156_1 gmake[1]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Usage: update_license.pl [OPTION] LICENSE-FILE SOURCE-FILES... OPTIONS: -S dir use dir as location of source-files -c2f_comment convert c++ comments in license header to F90 style -c2sh_comment convert c++ comments in license header to shell script style echo 'updated source license headers' >.license.stamp gmake all-recursive gmake[2]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Making all in src gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' depbase=`echo apps/version.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT apps/version.o -MD -MP -MF $depbase.Tpo -c -o apps/version.o apps/version.C &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo core/src/chemical_mixture.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT core/src/chemical_mixture.lo -MD -MP -MF $depbase.Tpo -c -o core/src/chemical_mixture.lo core/src/chemical_mixture.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/ascii_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/ascii_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/ascii_parser.lo parsing/src/ascii_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/blottner_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/blottner_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/blottner_parsing.lo parsing/src/blottner_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/cea_mixture_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include 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-I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT core/src/chemical_mixture.lo -MD -MP -MF core/src/.deps/chemical_mixture.Tpo -c core/src/chemical_mixture.C -fPIC -DPIC -o core/src/.libs/chemical_mixture.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/blottner_parsing.lo -MD -MP -MF parsing/src/.deps/blottner_parsing.Tpo -c parsing/src/blottner_parsing.C -fPIC -DPIC -o parsing/src/.libs/blottner_parsing.o depbase=`echo parsing/src/cea_mixture_ascii_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/cea_mixture_ascii_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/cea_mixture_ascii_parsing.lo parsing/src/cea_mixture_ascii_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/ascii_parser.lo -MD -MP -MF parsing/src/.deps/ascii_parser.Tpo -c parsing/src/ascii_parser.C -fPIC -DPIC -o parsing/src/.libs/ascii_parser.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/cea_mixture_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_parsing.Tpo -c parsing/src/cea_mixture_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/cea_mixture_ascii_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_ascii_parsing.Tpo -c parsing/src/cea_mixture_ascii_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_ascii_parsing.o depbase=`echo parsing/src/chemkin_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/chemkin_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/chemkin_parser.lo parsing/src/chemkin_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/chemkin_parser.lo -MD -MP -MF parsing/src/.deps/chemkin_parser.Tpo -c parsing/src/chemkin_parser.C -fPIC -DPIC -o parsing/src/.libs/chemkin_parser.o depbase=`echo parsing/src/nasa_mixture_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/nasa_mixture_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/nasa_mixture_parsing.lo parsing/src/nasa_mixture_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include 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-I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/parser_base.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/parser_base.lo parsing/src/parser_base.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/parser_base.lo -MD -MP -MF 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parsing/src/.libs/sutherland_parsing.o depbase=`echo parsing/src/transport_species_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/transport_species_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/transport_species_parsing.lo parsing/src/transport_species_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/transport_species_parsing.lo -MD -MP -MF parsing/src/.deps/transport_species_parsing.Tpo -c parsing/src/transport_species_parsing.C -fPIC -DPIC -o parsing/src/.libs/transport_species_parsing.o depbase=`echo parsing/src/xml_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/xml_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/xml_parser.lo parsing/src/xml_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT parsing/src/xml_parser.lo -MD -MP -MF parsing/src/.deps/xml_parser.Tpo -c parsing/src/xml_parser.C -fPIC -DPIC -o parsing/src/.libs/xml_parser.o depbase=`echo transport/src/transport_mixture.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT transport/src/transport_mixture.lo -MD -MP -MF $depbase.Tpo -c -o transport/src/transport_mixture.lo transport/src/transport_mixture.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT transport/src/transport_mixture.lo -MD -MP -MF transport/src/.deps/transport_mixture.Tpo -c transport/src/transport_mixture.C -fPIC -DPIC -o transport/src/.libs/transport_mixture.o depbase=`echo utilities/src/antioch_version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT utilities/src/antioch_version.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/antioch_version.lo utilities/src/antioch_version.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT utilities/src/antioch_version.lo -MD -MP -MF utilities/src/.deps/antioch_version.Tpo -c utilities/src/antioch_version.C -fPIC -DPIC -o utilities/src/.libs/antioch_version.o depbase=`echo utilities/src/gsl_spliner_impl.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT utilities/src/gsl_spliner_impl.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/gsl_spliner_impl.lo utilities/src/gsl_spliner_impl.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT utilities/src/gsl_spliner_impl.lo -MD -MP -MF utilities/src/.deps/gsl_spliner_impl.Tpo -c utilities/src/gsl_spliner_impl.C -fPIC -DPIC -o utilities/src/.libs/gsl_spliner_impl.o depbase=`echo utilities/src/gsl_spliner_shim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT utilities/src/gsl_spliner_shim.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/gsl_spliner_shim.lo utilities/src/gsl_spliner_shim.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT utilities/src/gsl_spliner_shim.lo -MD -MP -MF utilities/src/.deps/gsl_spliner_shim.Tpo -c utilities/src/gsl_spliner_shim.C -fPIC -DPIC -o utilities/src/.libs/gsl_spliner_shim.o depbase=`echo utilities/src/string_utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT utilities/src/string_utils.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/string_utils.lo utilities/src/string_utils.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -MT utilities/src/string_utils.lo -MD -MP -MF utilities/src/.deps/string_utils.Tpo -c utilities/src/string_utils.C -fPIC -DPIC -o utilities/src/.libs/string_utils.o /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -L/usr/local/lib -Wl,-rpath,/usr/local/lib -o libantioch.la -rpath /usr/local/lib core/src/chemical_mixture.lo parsing/src/ascii_parser.lo parsing/src/blottner_parsing.lo parsing/src/cea_mixture_parsing.lo parsing/src/cea_mixture_ascii_parsing.lo parsing/src/chemkin_parser.lo parsing/src/nasa_mixture_parsing.lo parsing/src/parser_base.lo parsing/src/read_reaction_set_data.lo parsing/src/species_parsing.lo parsing/src/sutherland_parsing.lo parsing/src/transport_species_parsing.lo parsing/src/xml_parser.lo transport/src/transport_mixture.lo utilities/src/antioch_version.lo utilities/src/gsl_spliner_impl.lo utilities/src/gsl_spliner_shim.lo utilities/src/string_utils.lo -lgsl -lgslcblas -lOpenCL -lm libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/gcc50/crtbeginS.o core/src/.libs/chemical_mixture.o parsing/src/.libs/ascii_parser.o parsing/src/.libs/blottner_parsing.o parsing/src/.libs/cea_mixture_parsing.o parsing/src/.libs/cea_mixture_ascii_parsing.o parsing/src/.libs/chemkin_parser.o parsing/src/.libs/nasa_mixture_parsing.o parsing/src/.libs/parser_base.o parsing/src/.libs/read_reaction_set_data.o parsing/src/.libs/species_parsing.o parsing/src/.libs/sutherland_parsing.o parsing/src/.libs/transport_species_parsing.o parsing/src/.libs/xml_parser.o transport/src/.libs/transport_mixture.o utilities/src/.libs/antioch_version.o utilities/src/.libs/gsl_spliner_impl.o utilities/src/.libs/gsl_spliner_shim.o utilities/src/.libs/string_utils.o -L/usr/local/lib -lgsl -lgslcblas -lOpenCL -L/usr/lib/gcc50 -lstdc++ -lm -lc -lgcc -lgcc_pic /usr/lib/gcc50/crtendS.o /usr/lib/crtn.o -O2 -Wl,-rpath -Wl,/usr/local/lib -Wl,-soname -Wl,libantioch.so.0 -o .libs/libantioch.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libantioch.so.0" && ln -s "libantioch.so.0.0.0" "libantioch.so.0") libtool: link: (cd ".libs" && rm -f "libantioch.so" && ln -s "libantioch.so.0.0.0" "libantioch.so") libtool: link: ( cd ".libs" && rm -f "libantioch.la" && ln -s "../libantioch.la" "libantioch.la" ) /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -L/usr/local/lib -Wl,-rpath,/usr/local/lib -o antioch_version apps/version.o libantioch.la -lgsl -lgslcblas -lOpenCL -lm libtool: link: c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -std=c++11 -std=c++11 -Wl,-rpath -Wl,/usr/local/lib -o .libs/antioch_version apps/version.o -L/usr/local/lib ./.libs/libantioch.so -lm -lgsl -lgslcblas -lOpenCL -Wl,-rpath -Wl,/usr/local/lib gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' Making all in test gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' Making all in doxygen gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' Making all in share gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[2]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[1]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for antioch-0.4.0.156_1 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake install-recursive gmake[2]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Making install in src gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libantioch.la '/construction/science/antioch/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libantioch.so.0.0.0 /construction/science/antioch/stage/usr/local/lib/libantioch.so.0.0.0 libtool: install: (cd /construction/science/antioch/stage/usr/local/lib && { ln -s -f libantioch.so.0.0.0 libantioch.so.0 || { rm -f libantioch.so.0 && ln -s libantioch.so.0.0.0 libantioch.so.0; }; }) libtool: install: (cd /construction/science/antioch/stage/usr/local/lib && { ln -s -f libantioch.so.0.0.0 libantioch.so || { rm -f libantioch.so && ln -s libantioch.so.0.0.0 libantioch.so; }; }) libtool: install: /usr/bin/install -c .libs/libantioch.lai /construction/science/antioch/stage/usr/local/lib/libantioch.la libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/bin' /bin/sh ../libtool --mode=install install -s -m 555 antioch_version '/construction/science/antioch/stage/usr/local/bin' libtool: warning: 'libantioch.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/antioch_version /construction/science/antioch/stage/usr/local/bin/antioch_version /bin/mkdir -p '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 core/include/antioch/chemical_species.h core/include/antioch/chemical_mixture.h core/include/antioch/kinetics_conditions.h units/include/antioch/converter.h units/include/antioch/insi.h units/include/antioch/siprefix.h units/include/antioch/unit_base.h units/include/antioch/unit_defs.h units/include/antioch/units.h units/include/antioch/unit_store.h particles_flux/include/antioch/sigma_bin_converter.h particles_flux/include/antioch/particle_flux.h kinetics/include/antioch/kinetics_enum.h kinetics/include/antioch/kinetics_type.h kinetics/include/antioch/constant_rate.h kinetics/include/antioch/hercourtessen_rate.h kinetics/include/antioch/berthelot_rate.h kinetics/include/antioch/arrhenius_rate.h kinetics/include/antioch/berthelothercourtessen_rate.h kinetics/include/antioch/kooij_rate.h kinetics/include/antioch/vanthoff_rate.h kinetics/include/antioch/photochemical_rate.h kinetics/include/antioch/reaction_enum.h kinetics/include/antioch/reaction.h kinetics/include/antioch/elementary_reaction.h kinetics/include/antioch/duplicate_reaction.h kinetics/include/antioch/threebody_reaction.h kinetics/include/antioch/falloff_reaction.h kinetics/include/antioch/falloff_threebody_reaction.h kinetics/include/antioch/lindemann_falloff.h kinetics/include/antioch/troe_falloff.h kinetics/include/antioch/reaction_set.h kinetics/include/antioch/reaction_parsing.h kinetics/include/antioch/kinetics_parsing.h kinetics/include/antioch/kinetics_evaluator.h parsing/include/antioch/tinyxml2.h parsing/include/antioch/tinyxml2_imp.h parsing/include/antioch/read_reaction_set_data.h parsing/include/antioch/read_reaction_set_data_xml.h parsing/include/antioch/blottner_parsing.h '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 parsing/include/antioch/sutherland_parsing.h parsing/include/antioch/cea_mixture_parsing.h parsing/include/antioch/nasa_mixture_parsing.h parsing/include/antioch/cea_mixture_ascii_parsing.h parsing/include/antioch/species_parsing.h parsing/include/antioch/transport_species_parsing.h parsing/include/antioch/transport_species_ascii_parsing.h parsing/include/antioch/nasa_mixture_ascii_parsing.h parsing/include/antioch/parsing_enum.h parsing/include/antioch/xml_parser.h parsing/include/antioch/chemkin_definitions.h parsing/include/antioch/chemkin_parser.h parsing/include/antioch/ascii_parser.h parsing/include/antioch/parser_base.h parsing/include/antioch/constant_lewis_diffusivity_building.h parsing/include/antioch/eucken_thermal_conductivity_building.h parsing/include/antioch/kinetics_theory_viscosity_building.h parsing/include/antioch/kinetics_theory_thermal_conductivity_building.h parsing/include/antioch/ascii_parser_instantiation_macro.h parsing/include/antioch/blottner_parsing_instantiate_macro.h parsing/include/antioch/cea_mixture_ascii_parsing_instantiate_macro.h parsing/include/antioch/nasa_mixture_parsing_instantiate_macro.h parsing/include/antioch/read_reaction_set_data_instantiate_macro.h parsing/include/antioch/species_parsing_instantiation_macro.h parsing/include/antioch/sutherland_parsing_instantiate_macro.h parsing/include/antioch/xml_parser_instantiation_macro.h thermo/include/antioch/nasa_curve_fit_base.h thermo/include/antioch/nasa7_curve_fit.h thermo/include/antioch/nasa9_curve_fit.h thermo/include/antioch/cea_curve_fit.h thermo/include/antioch/temp_cache.h thermo/include/antioch/nasa_mixture.h thermo/include/antioch/nasa_evaluator.h thermo/include/antioch/cea_mixture.h thermo/include/antioch/cea_evaluator.h thermo/include/antioch/stat_mech_thermo.h thermo/include/antioch/ideal_gas_micro_thermo.h thermo/include/antioch/macro_micro_thermo_base.h transport/include/antioch/mixture_transport_base.h transport/include/antioch/mixture_viscosity.h '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 transport/include/antioch/mixture_conductivity.h transport/include/antioch/mixture_diffusion.h transport/include/antioch/wilke_mixture.h transport/include/antioch/wilke_evaluator.h transport/include/antioch/mixture_averaged_transport_mixture.h transport/include/antioch/mixture_averaged_transport_evaluator.h transport/include/antioch/lennard_jones_potential.h transport/include/antioch/stockmayer_potential.h transport/include/antioch/transport_mixture.h transport/include/antioch/transport_species.h viscosity/include/antioch/species_viscosity_base.h viscosity/include/antioch/blottner_viscosity.h viscosity/include/antioch/sutherland_viscosity.h viscosity/include/antioch/kinetics_theory_viscosity.h diffusion/include/antioch/constant_lewis_diffusivity.h diffusion/include/antioch/molecular_binary_diffusion.h diffusion/include/antioch/binary_diffusion_base.h diffusion/include/antioch/species_diffusion_base.h diffusion/include/antioch/diffusion_traits.h thermal_conduction/include/antioch/eucken_thermal_conductivity.h thermal_conduction/include/antioch/kinetics_theory_thermal_conductivity.h thermal_conduction/include/antioch/rotational_relaxation.h thermal_conduction/include/antioch/species_conductivity_base.h thermal_conduction/include/antioch/conductivity_traits.h utilities/include/antioch/antioch_exceptions.h utilities/include/antioch/antioch_asserts.h utilities/include/antioch/cmath_shims.h utilities/include/antioch/default_filename.h utilities/include/antioch/eigen_utils.h utilities/include/antioch/eigen_utils_decl.h utilities/include/antioch/input_utils.h utilities/include/antioch/math_constants.h utilities/include/antioch/metaprogramming.h utilities/include/antioch/metaprogramming_decl.h utilities/include/antioch/metaphysicl_utils.h utilities/include/antioch/metaphysicl_utils_decl.h utilities/include/antioch/physical_constants.h utilities/include/antioch/string_utils.h utilities/include/antioch/valarray_utils.h utilities/include/antioch/valarray_utils_decl.h '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 utilities/include/antioch/vector_utils.h utilities/include/antioch/vector_utils_decl.h utilities/include/antioch/vexcl_utils.h utilities/include/antioch/vexcl_utils_decl.h utilities/include/antioch/gsl_spliner.h utilities/include/antioch/gsl_spliner_impl.h utilities/include/antioch/gsl_spliner_shim.h utilities/include/antioch/gsl_spliner_policy.h utilities/include/antioch/antioch_numeric_type_instantiate_macro.h ../src/utilities/include/antioch/antioch_version.h '/construction/science/antioch/stage/usr/local/include/antioch' gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' Making install in test gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 common/testing_utils.h standard_unit/reaction_rate_test_base.h standard_unit/reaction_rate_vector_test_base.h standard_unit/arrhenius_rate_test_helper.h standard_unit/arrhenius_rate_vector_test_base.h standard_unit/nasa_test_helper.h standard_unit/nasa7_thermo_test_base.h standard_unit/nasa9_thermo_test_base.h standard_unit/thermo_vector_test_base.h standard_unit/nasa7_mixture_vector_test_base.h standard_unit/nasa9_mixture_vector_test_base.h gsl_unit/gsl_spliner_test_base.h '/construction/science/antioch/stage/usr/local/include/antioch' gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' Making install in doxygen gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' Making install in share gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/science/antioch/stage/usr/local/share/aclocal' install -m 0644 ../share/aclocal/antioch.m4 '/construction/science/antioch/stage/usr/local/share/aclocal' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/share/antioch/default_files' install -m 0644 ../share/antioch_default_files/antioch_default_blottner_coefficient.dat ../share/antioch_default_files/antioch_default_chemical_mixture.dat ../share/antioch_default_files/antioch_default_chemical_species.dat ../share/antioch_default_files/antioch_default_electronic_data.dat ../share/antioch_default_files/antioch_default_sutherland_coefficient.dat ../share/antioch_default_files/antioch_default_thermo_data.dat ../share/antioch_default_files/antioch_default_thermo_data_NASA7.dat ../share/antioch_default_files/antioch_default_transport_species_data.dat ../share/antioch_default_files/antioch_default_vibrational_data.dat '/construction/science/antioch/stage/usr/local/share/antioch/default_files' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/share/antioch/xml_inputs' install -m 0644 ../share/xml_inputs/gri30.xml ../share/xml_inputs/nasa9_thermo.xml '/construction/science/antioch/stage/usr/local/share/antioch/xml_inputs' gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/science/antioch/stage/usr/local/include' install -m 0644 antioch_config.h '/construction/science/antioch/stage/usr/local/include' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/lib/pkgconfig' install -m 0644 antioch.pc '/construction/science/antioch/stage/usr/local/lib/pkgconfig' gmake install-data-hook gmake[5]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' cd /construction/science/antioch/stage/usr/local/include && cat antioch_config.h | /usr/bin/sed "s,\(define ANTIOCH_DEFAULT_FILES_PATH\).*$,\1 "\"/usr/local/share/antioch_default_files/\""," > config.replaced ; \ cd /construction/science/antioch/stage/usr/local/include && mv config.replaced antioch_config.h ; gmake[5]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[2]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[1]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for antioch-0.4.0.156_1 file sizes/checksums [163]: .. done packing files [163]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 21 JUL 2018 at 22:12:58 UTC Duration: 00:02:12