=> Building math/py-scientific@py27 Started : Friday, 20 JUL 2018 at 19:21:01 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for py27-scientific-2.8_6: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/math/py-scientific XDG_CONFIG_HOME=/construction/math/py-scientific HOME=/construction/math/py-scientific TMPDIR="/tmp" PATH=/construction/math/py-scientific/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/math/py-scientific XDG_CONFIG_HOME=/construction/math/py-scientific HOME=/construction/math/py-scientific TMPDIR="/tmp" PATH=/construction/math/py-scientific/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-scientific/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py27-scientific" EXAMPLESDIR="share/examples/py27-scientific" DATADIR="share/scientific" WWWDIR="www/scientific" ETCDIR="etc/scientific" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scientific DOCSDIR=/usr/local/share/doc/py27-scientific EXAMPLESDIR=/usr/local/share/examples/py27-scientific WWWDIR=/usr/local/www/scientific ETCDIR=/usr/local/etc/scientific -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-scientific-2.8_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> py27-scientific-2.8_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-scientific-2.8_6 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-scientific-2.8_6 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-scientific-2.8_6 for building => SHA256 Checksum OK for ScientificPython-2.8.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-scientific-2.8_6 for building ===> Extracting for py27-scientific-2.8_6 => SHA256 Checksum OK for ScientificPython-2.8.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-scientific-2.8_6 ===> Applying ports patches for py27-scientific-2.8_6 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-scientific-2.8_6 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.14.3,1.txz Installing py27-numpy-1.14.3,1... `-- Installing gcc5-5.5.0_4... | `-- Installing binutils-2.30_3,1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Extracting binutils-2.30_3,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0_1... | | `-- Installing mpfr-4.0.1... | | `-- Extracting mpfr-4.0.1: .......... done | `-- Extracting mpc-1.1.0_1: ......... done `-- Extracting gcc5-5.5.0_4: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing py27-setuptools-39.2.0... | `-- Installing python27-2.7.15... | | `-- Installing expat-2.2.5... | | `-- Extracting expat-2.2.5: .......... done | | `-- Installing libffi-3.2.1_2... | | `-- Extracting libffi-3.2.1_2: .......... done | | `-- Installing libressl-2.7.4... | | `-- Extracting libressl-2.7.4: .......... done | | `-- Installing ncurses-6.0.0s20171223_1... | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Installing readline-7.0.3_1... | | `-- Extracting readline-7.0.3_1: .......... done | `-- Extracting python27-2.7.15: .......... done `-- Extracting py27-setuptools-39.2.0: .......... done `-- Installing suitesparse-5.2.0... | `-- Installing lapack-3.5.0_4... | | `-- Installing blas-3.5.0_4... | | `-- Extracting blas-3.5.0_4: ....... done | `-- Extracting lapack-3.5.0_4: .......... done | `-- Installing metis-5.1.0_4... | `-- Extracting metis-5.1.0_4: .......... done `-- Extracting suitesparse-5.2.0: .......... done Extracting py27-numpy-1.14.3,1: .......... done Message from gcc5-5.5.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from metis-5.1.0_4: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-scientific-2.8_6 depends on package: py27-numpy>0 - found ===> Returning to build of py27-scientific-2.8_6 ===> py27-scientific-2.8_6 depends on package: py27-setuptools>0 - found ===> py27-scientific-2.8_6 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py27-scientific-2.8_6 depends on shared library: libnetcdf.so - not found ===> Installing existing package /packages/All/netcdf-4.6.1.txz Installing netcdf-4.6.1... `-- Installing curl-7.60.0... | `-- Installing ca_root_nss-3.38... | `-- Extracting ca_root_nss-3.38: ........ done | `-- Installing krb5-1.16.1_5... | | `-- Installing pkgconf-1.4.2,1... | | `-- Extracting pkgconf-1.4.2,1: .......... done | `-- Extracting krb5-1.16.1_5: .......... done | `-- Installing libnghttp2-1.32.0... | `-- Extracting libnghttp2-1.32.0: .......... done `-- Extracting curl-7.60.0: .......... done `-- Installing hdf-szip-2.1_2... `-- Extracting hdf-szip-2.1_2: ........ done `-- Installing hdf5-1.10.1_1... `-- Extracting hdf5-1.10.1_1: .......... done Extracting netcdf-4.6.1: .......... done Message from ca_root_nss-3.38: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> py27-scientific-2.8_6 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Returning to build of py27-scientific-2.8_6 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-scientific-2.8_6 Using netCDF installation in /usr/local running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-scientific-2.8_6 Using netCDF installation in /usr/local running build running build_py creating build creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/__pkginfo__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/indexing.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/DictWithDefault.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/Mathematica.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/NRNG.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/N.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/FFT.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/LA.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific copying Scientific/NumberDict.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Clustering copying Scientific/Clustering/AffinityPropagation.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Clustering copying Scientific/Clustering/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Clustering creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Interpolation.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Rational.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions copying Scientific/Functions/FindRoot.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Derivatives.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions copying Scientific/Functions/LeastSquares.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions copying Scientific/Functions/FirstDerivatives.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Polynomial.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions copying Scientific/Functions/Romberg.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions copying Scientific/Functions/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/Objects3D.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/TensorModule.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/VectorModule.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/Transformation.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/TensorAnalysis.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry copying Scientific/Geometry/Quaternion.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO copying Scientific/IO/PDBExportFilters.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO copying Scientific/IO/TextFile.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO copying Scientific/IO/PDB.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO copying Scientific/IO/ArrayIO.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO copying Scientific/IO/PDBSpaceGroups.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO copying Scientific/IO/FortranFormat.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO copying Scientific/IO/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO copying Scientific/IO/NetCDF.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Physics copying Scientific/Physics/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Physics copying Scientific/Physics/PhysicalQuantities.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Physics copying Scientific/Physics/Potential.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Physics creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/QtWidgets copying Scientific/QtWidgets/qt_fake.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/QtWidgets copying Scientific/QtWidgets/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/QtWidgets copying Scientific/QtWidgets/QtVisualizationCanvas.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/QtWidgets copying Scientific/QtWidgets/QtPlotCanvas.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/QtWidgets creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Statistics copying Scientific/Statistics/Histogram.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Statistics copying Scientific/Statistics/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Statistics creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Signals copying Scientific/Signals/Models.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Signals copying Scientific/Signals/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Signals creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Threading copying Scientific/Threading/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Threading copying Scientific/Threading/TaskManager.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Threading creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/TkWidgets copying Scientific/TkWidgets/Utility.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/TkWidgets copying Scientific/TkWidgets/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/TkWidgets copying Scientific/TkWidgets/TkPlotCanvas.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/TkWidgets copying Scientific/TkWidgets/TkVisualizationCanvas.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/TkWidgets creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/VRML2.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/VRML.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/VMD.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/VPython.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/Color.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization copying Scientific/Visualization/PyMOL.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/MPI copying Scientific/MPI/IO.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/MPI copying Scientific/MPI/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/MPI copying Scientific/MPI/core.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/MPI creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/DistributedComputing copying Scientific/DistributedComputing/TaskManager.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/DistributedComputing copying Scientific/DistributedComputing/MasterSlave.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/DistributedComputing copying Scientific/DistributedComputing/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/DistributedComputing creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP copying Scientific/BSP/Console.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP copying Scientific/BSP/core.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP copying Scientific/BSP/RemoteObjects.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP copying Scientific/BSP/IO.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP copying Scientific/BSP/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP running build_ext building 'Scientific_netcdf' extension creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_netcdf.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_netcdf.o -DNUMPY=1 In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Src/Scientific_netcdf.c:14: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ creating build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5 cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_netcdf.o -L/usr/local/lib -L/usr/local/lib -lnetcdf -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_netcdf.so building 'Scientific_vector' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_vector.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_vector.o -DNUMPY=1 cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_vector.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_vector.so building 'Scientific_affinitypropagation' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_affinitypropagation.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_affinitypropagation.o -DNUMPY=1 In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h:1, from Include/Scientific/arrayobject.h:2, from Src/Scientific_affinitypropagation.c:14: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_affinitypropagation.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_affinitypropagation.so building 'Scientific_numerics_package_id' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_numerics_package_id.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_numerics_package_id.o -DNUMPY=1 In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h:1, from Include/Scientific/arrayobject.h:2, from Src/Scientific_numerics_package_id.c:14: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_numerics_package_id.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_numerics_package_id.so building 'Scientific_interpolation' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -IInclude -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c Src/Scientific_interpolation.c -o build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_interpolation.o -DNUMPY=1 In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h:1, from Include/Scientific/arrayobject.h:2, from Src/Scientific_interpolation.c:26: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.2-SYNTH-x86_64-2.7/Src/Scientific_interpolation.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_interpolation.so running build_scripts creating build/scripts-2.7 copying and adjusting task_manager -> build/scripts-2.7 copying and adjusting bsp_virtual -> build/scripts-2.7 changing mode of build/scripts-2.7/task_manager from 644 to 755 changing mode of build/scripts-2.7/bsp_virtual from 644 to 755 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-scientific-2.8_6 depends on package: py27-numpy>0 - found ===> py27-scientific-2.8_6 depends on package: py27-setuptools>0 - found ===> py27-scientific-2.8_6 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-scientific-2.8_6 ===> Generating temporary packing list Using netCDF installation in /usr/local running install running build running build_py running build_ext running build_scripts running install_lib creating /construction/math/py-scientific/stage/usr/local/lib/python2.7 creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Threading/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Threading/TaskManager.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/FFT.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Physics/Potential.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Physics/PhysicalQuantities.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Physics/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry/VectorModule.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry/Quaternion.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry/TensorModule.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry/Transformation.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry/TensorAnalysis.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Geometry/Objects3D.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Mathematica.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/N.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/MPI/core.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/MPI/IO.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/MPI/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/QtWidgets/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/QtWidgets/QtPlotCanvas.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/QtWidgets/qt_fake.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/QtWidgets/QtVisualizationCanvas.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly5 copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_vector.so -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly5 copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_netcdf.so -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly5 copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_numerics_package_id.so -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly5 copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_interpolation.so -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly5 copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/dragonfly5/Scientific_affinitypropagation.so -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/dragonfly5 copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/NumberDict.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/indexing.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Statistics/Histogram.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Statistics/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/TkWidgets/TkPlotCanvas.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/TkWidgets/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/TkWidgets/TkVisualizationCanvas.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/TkWidgets/Utility.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions/FindRoot.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions/Interpolation.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions/FirstDerivatives.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions/Derivatives.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions/Rational.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions/LeastSquares.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions/Romberg.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Functions/Polynomial.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP/IO.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP/RemoteObjects.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP/Console.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/BSP/core.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/NRNG.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Clustering/AffinityPropagation.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Clustering/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO/PDBExportFilters.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO/FortranFormat.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO/NetCDF.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO/PDB.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO/TextFile.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO/ArrayIO.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/IO/PDBSpaceGroups.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/__pkginfo__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/DistributedComputing/MasterSlave.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/DistributedComputing/TaskManager.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/DistributedComputing/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/LA.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/DictWithDefault.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization/VPython.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization/VRML2.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization/VRML.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization/VMD.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization/Color.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Visualization/PyMOL.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization creating /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Signals/__init__.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals copying build/lib.dragonfly-5.2-SYNTH-x86_64-2.7/Scientific/Signals/Models.py -> /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Threading/TaskManager.py to TaskManager.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/FFT.py to FFT.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics/Potential.py to Potential.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics/PhysicalQuantities.py to PhysicalQuantities.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Physics/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/VectorModule.py to VectorModule.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/Quaternion.py to Quaternion.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/TensorModule.py to TensorModule.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/Transformation.py to Transformation.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/TensorAnalysis.py to TensorAnalysis.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Geometry/Objects3D.py to Objects3D.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Mathematica.py to Mathematica.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/N.py to N.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI/core.py to core.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI/IO.py to IO.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/MPI/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets/QtPlotCanvas.py to QtPlotCanvas.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets/qt_fake.py to qt_fake.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/QtWidgets/QtVisualizationCanvas.py to QtVisualizationCanvas.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/NumberDict.py to NumberDict.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/indexing.py to indexing.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics/Histogram.py to Histogram.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Statistics/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets/TkPlotCanvas.py to TkPlotCanvas.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets/TkVisualizationCanvas.py to TkVisualizationCanvas.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/TkWidgets/Utility.py to Utility.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/FindRoot.py to FindRoot.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Interpolation.py to Interpolation.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/FirstDerivatives.py to FirstDerivatives.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Derivatives.py to Derivatives.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Rational.py to Rational.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/LeastSquares.py to LeastSquares.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Romberg.py to Romberg.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Functions/Polynomial.py to Polynomial.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/IO.py to IO.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/RemoteObjects.py to RemoteObjects.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/Console.py to Console.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/BSP/core.py to core.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/NRNG.py to NRNG.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering/AffinityPropagation.py to AffinityPropagation.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Clustering/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/PDBExportFilters.py to PDBExportFilters.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/FortranFormat.py to FortranFormat.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/NetCDF.py to NetCDF.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/PDB.py to PDB.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/TextFile.py to TextFile.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/ArrayIO.py to ArrayIO.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/IO/PDBSpaceGroups.py to PDBSpaceGroups.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/__pkginfo__.py to __pkginfo__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing/MasterSlave.py to MasterSlave.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing/TaskManager.py to TaskManager.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DistributedComputing/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/LA.py to LA.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/DictWithDefault.py to DictWithDefault.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/VPython.py to VPython.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/VRML2.py to VRML2.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/VRML.py to VRML.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/VMD.py to VMD.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/Color.py to Color.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Visualization/PyMOL.py to PyMOL.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals/__init__.py to __init__.pyc byte-compiling /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/Scientific/Signals/Models.py to Models.pyc writing byte-compilation script '/tmp/tmpZlSclO.py' /usr/local/bin/python2.7 -O /tmp/tmpZlSclO.py removing /tmp/tmpZlSclO.py running install_headers creating /construction/math/py-scientific/stage/usr/local/include/python2.7 creating /construction/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/arrayobject.h -> /construction/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/netcdfmodule.h -> /construction/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/mpimodule.h -> /construction/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/bspmodule.h -> /construction/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/PyBSP_API.h -> /construction/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying Include/Scientific/PyMPI_API.h -> /construction/math/py-scientific/stage/usr/local/include/python2.7/Scientific copying /usr/local/include/netcdf.h -> /construction/math/py-scientific/stage/usr/local/include/python2.7/Scientific running install_egg_info running egg_info creating ScientificPython.egg-info writing ScientificPython.egg-info/PKG-INFO writing top-level names to ScientificPython.egg-info/top_level.txt writing dependency_links to ScientificPython.egg-info/dependency_links.txt writing manifest file 'ScientificPython.egg-info/SOURCES.txt' reading manifest file 'ScientificPython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'HG_CHANGESET_ID' warning: no previously-included files found matching 'Scientific/BSP/Tasks.py' writing manifest file 'ScientificPython.egg-info/SOURCES.txt' Copying ScientificPython.egg-info to /construction/math/py-scientific/stage/usr/local/lib/python2.7/site-packages/ScientificPython-2.8-py2.7.egg-info running install_scripts copying build/scripts-2.7/task_manager -> /construction/math/py-scientific/stage/usr/local/bin copying build/scripts-2.7/bsp_virtual -> /construction/math/py-scientific/stage/usr/local/bin changing mode of /construction/math/py-scientific/stage/usr/local/bin/task_manager to 755 changing mode of /construction/math/py-scientific/stage/usr/local/bin/bsp_virtual to 755 writing list of installed files to '/construction/math/py-scientific/.PLIST.pymodtmp' install -m 0644 /construction/math/py-scientific/ScientificPython-2.8/LICENSE /construction/math/py-scientific/stage/usr/local/share/doc/py27-scientific cd /construction/math/py-scientific/ScientificPython-2.8/Doc; /usr/bin/tar -c --exclude='*~' -f - . | (cd /construction/math/py-scientific/stage/usr/local/share/doc/py27-scientific; /usr/bin/tar -xf -) cd /construction/math/py-scientific/ScientificPython-2.8/Examples; /usr/bin/tar -c --exclude='*~' -f - . | (cd /construction/math/py-scientific/stage/usr/local/share/examples/py27-scientific; /usr/bin/tar -xf -) ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-scientific-2.8_6 file sizes/checksums [588]: ...... done packing files [588]: ...... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 20 JUL 2018 at 19:21:26 UTC Duration: 00:00:24