=> Building math/py-igakit@py36 Started : Saturday, 21 JUL 2018 at 18:50:38 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/math/py-igakit XDG_CONFIG_HOME=/construction/math/py-igakit HOME=/construction/math/py-igakit TMPDIR="/tmp" PATH=/construction/math/py-igakit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/construction/math/py-igakit XDG_CONFIG_HOME=/construction/math/py-igakit HOME=/construction/math/py-igakit TMPDIR="/tmp" PATH=/construction/math/py-igakit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-igakit/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/igakit" EXAMPLESDIR="share/examples/igakit" DATADIR="share/igakit" WWWDIR="www/igakit" ETCDIR="etc/igakit" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/igakit DOCSDIR=/usr/local/share/doc/igakit EXAMPLESDIR=/usr/local/share/examples/igakit WWWDIR=/usr/local/www/igakit ETCDIR=/usr/local/etc/igakit -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-igakit-g20180107 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> py36-igakit-g20180107 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-igakit-g20180107 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py36-igakit-g20180107 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py36-igakit-g20180107 for building => SHA256 Checksum OK for igakit-g20180107.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py36-igakit-g20180107 for building ===> Extracting for py36-igakit-g20180107 => SHA256 Checksum OK for igakit-g20180107.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-igakit-g20180107 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-igakit-g20180107 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.14.3,1.txz Installing py36-numpy-1.14.3,1... `-- Installing gcc5-5.5.0_4... | `-- Installing binutils-2.30_3,1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Extracting binutils-2.30_3,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0_1... | | `-- Installing mpfr-4.0.1... | | `-- Extracting mpfr-4.0.1: .......... done | `-- Extracting mpc-1.1.0_1: ......... done `-- Extracting gcc5-5.5.0_4: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing py36-setuptools-39.2.0... | `-- Installing python36-3.6.5... | | `-- Installing expat-2.2.5... | | `-- Extracting expat-2.2.5: .......... done | | `-- Installing libffi-3.2.1_2... | | `-- Extracting libffi-3.2.1_2: .......... done | | `-- Installing libressl-2.7.4... | | `-- Extracting libressl-2.7.4: .......... done | | `-- Installing ncurses-6.0.0s20171223_1... | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Installing readline-7.0.3_1... | | `-- Extracting readline-7.0.3_1: .......... done | `-- Extracting python36-3.6.5: .......... done `-- Extracting py36-setuptools-39.2.0: .......... done `-- Installing suitesparse-5.2.0... | `-- Installing lapack-3.5.0_4... | | `-- Installing blas-3.5.0_4... | | `-- Extracting blas-3.5.0_4: ....... done | `-- Extracting lapack-3.5.0_4: .......... done | `-- Installing metis-5.1.0_4... | `-- Extracting metis-5.1.0_4: .......... done `-- Extracting suitesparse-5.2.0: .......... done Extracting py36-numpy-1.14.3,1: .......... done Message from gcc5-5.5.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from python36-3.6.5: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-39.2.0: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* Message from metis-5.1.0_4: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-igakit-g20180107 depends on package: py36-numpy>0 - found ===> Returning to build of py36-igakit-g20180107 ===> py36-igakit-g20180107 depends on executable: gfortran5 - found ===> py36-igakit-g20180107 depends on package: py36-setuptools>0 - found ===> py36-igakit-g20180107 depends on file: /usr/local/bin/python3.6 - found ===> py36-igakit-g20180107 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-igakit-g20180107 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-igakit-g20180107 running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "igakit.igalib" sources creating build creating build/src.dragonfly-5.2-SYNTH-x86_64-3.6 creating build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit f2py options: [] f2py: igakit/igalib.pyf Reading fortran codes... Reading file 'igakit/igalib.pyf' (format:free) Post-processing... Block: igalib Block: bsp Block: FindSpan Block: FindMult Block: FindSpanMult Block: EvalBasisFuns Block: EvalBasisFunsDers Block: SpanIndex Block: Greville Block: InsertKnot Block: RemoveKnot Block: Clamp Block: Unclamp Block: RefineKnotVector Block: DegreeElevate Block: Extract Block: Evaluate0 Block: Evaluate1 Block: Evaluate2 Block: Evaluate3 Block: Gradient1 Block: Gradient2 Block: Gradient3 Block: Hessian1 Block: Hessian2 Block: Hessian3 Block: ThirdDer1 Block: ThirdDer2 Block: ThirdDer3 Block: FourthDer1 Block: FourthDer2 Block: FourthDer3 Block: iga Block: KnotVector Block: GaussLegendreRule Block: GaussLobattoRule Block: BasisData Block: Greville Block: BasisDataCol Post-processing (stage 2)... Block: igalib Block: unknown_interface Block: bsp Block: FindSpan Block: FindMult Block: FindSpanMult Block: EvalBasisFuns Block: EvalBasisFunsDers Block: SpanIndex Block: Greville Block: InsertKnot Block: RemoveKnot Block: Clamp Block: Unclamp Block: RefineKnotVector Block: DegreeElevate Block: Extract Block: Evaluate0 Block: Evaluate1 Block: Evaluate2 Block: Evaluate3 Block: Gradient1 Block: Gradient2 Block: Gradient3 Block: Hessian1 Block: Hessian2 Block: Hessian3 Block: ThirdDer1 Block: ThirdDer2 Block: ThirdDer3 Block: FourthDer1 Block: FourthDer2 Block: FourthDer3 Block: iga Block: KnotVector Block: GaussLegendreRule Block: GaussLobattoRule Block: BasisData Block: Greville Block: BasisDataCol Building modules... Building module "igalib"... Constructing F90 module support for "bsp"... Constructing wrapper function "bsp.FindSpan"... span = FindSpan(p,U,u) Constructing wrapper function "bsp.FindMult"... mult = FindMult(p,U,u,[span]) Constructing wrapper function "bsp.FindSpanMult"... span,mult = FindSpanMult(p,U,u) Constructing wrapper function "bsp.EvalBasisFuns"... N = EvalBasisFuns(p,U,u,[span]) Constructing wrapper function "bsp.EvalBasisFunsDers"... dN = EvalBasisFunsDers(p,U,u,[d,span]) Constructing wrapper function "bsp.SpanIndex"... I = SpanIndex(p,U) Constructing wrapper function "bsp.Greville"... X = Greville(p,U) Constructing wrapper function "bsp.InsertKnot"... V,Qw = InsertKnot(p,U,Pw,u,[r]) Constructing wrapper function "bsp.RemoveKnot"... t,V,Qw = RemoveKnot(p,U,Pw,u,TOL,[r]) Constructing wrapper function "bsp.Clamp"... V,Qw = Clamp(p,U,Pw,[l,r]) Constructing wrapper function "bsp.Unclamp"... V,Qw = Unclamp(p,U,Pw,[C,l,r]) Constructing wrapper function "bsp.RefineKnotVector"... V,Qw = RefineKnotVector(p,U,Pw,X) Constructing wrapper function "bsp.DegreeElevate"... V,Qw = DegreeElevate(p,U,Pw,t) Constructing wrapper function "bsp.Extract"... Cw = Extract(p,U,Pw,uu) Constructing wrapper function "bsp.Evaluate0"... Cw = Evaluate0(Pw) Constructing wrapper function "bsp.Evaluate1"... Cw = Evaluate1(p,U,Pw,X) Constructing wrapper function "bsp.Evaluate2"... Cw = Evaluate2(px,Ux,py,Uy,Pw,X,Y) Constructing wrapper function "bsp.Evaluate3"... Cw = Evaluate3(px,Ux,py,Uy,pz,Uz,Pw,X,Y,Z) Constructing wrapper function "bsp.Gradient1"... G = Gradient1(map,px,Ux,Pw,F,X) Constructing wrapper function "bsp.Gradient2"... G = Gradient2(map,px,Ux,py,Uy,Pw,F,X,Y) Constructing wrapper function "bsp.Gradient3"... G = Gradient3(map,px,Ux,py,Uy,pz,Uz,Pw,F,X,Y,Z) Constructing wrapper function "bsp.Hessian1"... H = Hessian1(map,px,Ux,Pw,F,X) Constructing wrapper function "bsp.Hessian2"... H = Hessian2(map,px,Ux,py,Uy,Pw,F,X,Y) Constructing wrapper function "bsp.Hessian3"... H = Hessian3(map,px,Ux,py,Uy,pz,Uz,Pw,F,X,Y,Z) Constructing wrapper function "bsp.ThirdDer1"... D3 = ThirdDer1(map,px,Ux,Pw,F,X) Constructing wrapper function "bsp.ThirdDer2"... D3 = ThirdDer2(map,px,Ux,py,Uy,Pw,F,X,Y) Constructing wrapper function "bsp.ThirdDer3"... D3 = ThirdDer3(map,px,Ux,py,Uy,pz,Uz,Pw,F,X,Y,Z) Constructing wrapper function "bsp.FourthDer1"... D4 = FourthDer1(map,px,Ux,Pw,F,X) Constructing wrapper function "bsp.FourthDer2"... D4 = FourthDer2(map,px,Ux,py,Uy,Pw,F,X,Y) Constructing wrapper function "bsp.FourthDer3"... D4 = FourthDer3(map,px,Ux,py,Uy,pz,Uz,Pw,F,X,Y,Z) Constructing F90 module support for "iga"... Constructing wrapper function "iga.KnotVector"... U = KnotVector(E,p,[C,Ui,Uf,wrap]) Constructing wrapper function "iga.GaussLegendreRule"... X,W = GaussLegendreRule(q) Constructing wrapper function "iga.GaussLobattoRule"... X,W = GaussLobattoRule(q) Constructing wrapper function "iga.BasisData"... O,J,W,X,N = BasisData(p,U,[d,q]) Constructing wrapper function "iga.Greville"... X = Greville(p,U) Constructing wrapper function "iga.BasisDataCol"... O,N = BasisDataCol(p,U,X,[d]) Wrote C/API module "igalib" to file "build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalibmodule.c" Fortran 90 wrappers are saved to "build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalib-f2pywrappers2.f90" adding 'build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/fortranobject.c' to sources. adding 'build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit' to include_dirs. creating build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build creating build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6 creating build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying /usr/local/lib/python3.6/site-packages/numpy/f2py/src/fortranobject.c -> build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying /usr/local/lib/python3.6/site-packages/numpy/f2py/src/fortranobject.h -> build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit adding 'build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalib-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-5.2-SYNTH-x86_64-3.6 creating build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying igakit/plot_mpl.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying igakit/nurbs.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying igakit/transform.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying igakit/plot.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying igakit/plot_myv.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying igakit/cad.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying igakit/plot_nul.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying igakit/io.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit copying igakit/__init__.py -> build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit running build_ext customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp5y_1chxp/tmp creating /tmp/tmp5y_1chxp/tmp/tmp5y_1chxp compile options: '-MMD -MF /tmp/tmp5y_1chxp/file.c.d -c' cc: /tmp/tmp5y_1chxp/file.c customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu', 'gnu95']' customize GnuFCompiler Found executable /usr/local/bin/gfortran5 gnu: no Fortran 90 compiler found Could not locate executable cc -shared Found executable /usr/local/bin/ld Found executable /usr/local/bin/ar Found executable /usr/local/bin/ranlib gnu: no Fortran 90 compiler found customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'igakit.igalib' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/build creating build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit creating build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build creating build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit compile options: '-Ibuild/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalibmodule.c In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/fortranobject.h:13, from build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalibmodule.c:16: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc: build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/fortranobject.c In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/fortranobject.h:13, from build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/fortranobject.c:2: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ compiling Fortran 90 module sources creating build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/igakit Fortran f77 compiler: gfortran5 -Wall -g -ffixed-form -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc5 -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran5 -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc5 -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc5 -O3 -funroll-loops compile options: '-Ibuild/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' extra options: '-Jbuild/temp.dragonfly-5.2-SYNTH-x86_64-3.6/igakit -Ibuild/temp.dragonfly-5.2-SYNTH-x86_64-3.6/igakit' gfortran5:f90: igakit/igalib.f90 compiling Fortran sources Fortran f77 compiler: gfortran5 -Wall -g -ffixed-form -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc5 -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran5 -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc5 -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran5 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc5 -O3 -funroll-loops compile options: '-Ibuild/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' extra options: '-Jbuild/temp.dragonfly-5.2-SYNTH-x86_64-3.6/igakit -Ibuild/temp.dragonfly-5.2-SYNTH-x86_64-3.6/igakit' gfortran5:f90: build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalib-f2pywrappers2.f90 /usr/local/bin/gfortran5 -Wall -g -shared -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalibmodule.o build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/fortranobject.o build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalib.o build/temp.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalib-f2pywrappers2.o -L/usr/local/lib/gcc5/gcc/x86_64-portbld-dragonfly5.2/5.5.0 -L/usr/local/lib -lpython3.6m -lgfortran -o build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalib.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-igakit-g20180107 depends on package: py36-numpy>0 - found ===> py36-igakit-g20180107 depends on executable: gfortran5 - found ===> py36-igakit-g20180107 depends on package: py36-setuptools>0 - found ===> py36-igakit-g20180107 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-igakit-g20180107 ===> Generating temporary packing list running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "igakit.igalib" sources f2py options: [] adding 'build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/fortranobject.c' to sources. adding 'build/src.dragonfly-5.2-SYNTH-x86_64-3.6/build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit' to include_dirs. adding 'build/src.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalib-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpxi38ga2h/tmp creating /tmp/tmpxi38ga2h/tmp/tmpxi38ga2h compile options: '-MMD -MF /tmp/tmpxi38ga2h/file.c.d -c' cc: /tmp/tmpxi38ga2h/file.c customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu', 'gnu95']' customize GnuFCompiler Found executable /usr/local/bin/gfortran5 gnu: no Fortran 90 compiler found Could not locate executable cc -shared Found executable /usr/local/bin/ld Found executable /usr/local/bin/ar Found executable /usr/local/bin/ranlib gnu: no Fortran 90 compiler found customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext running install_lib creating /construction/math/py-igakit/stage/usr/local/lib/python3.6 creating /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages creating /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/igalib.so -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/plot_mpl.py -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/io.py -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/__init__.py -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/plot_myv.py -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/nurbs.py -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/plot_nul.py -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/transform.py -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/cad.py -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit copying build/lib.dragonfly-5.2-SYNTH-x86_64-3.6/igakit/plot.py -> /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit byte-compiling /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit/plot_mpl.py to plot_mpl.cpython-36.pyc byte-compiling /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit/io.py to io.cpython-36.pyc byte-compiling /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit/plot_myv.py to plot_myv.cpython-36.pyc byte-compiling /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit/nurbs.py to nurbs.cpython-36.pyc byte-compiling /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit/plot_nul.py to plot_nul.cpython-36.pyc byte-compiling /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit/transform.py to transform.cpython-36.pyc byte-compiling /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit/cad.py to cad.cpython-36.pyc byte-compiling /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit/plot.py to plot.cpython-36.pyc writing byte-compilation script '/tmp/tmp_m_4grzv.py' /usr/local/bin/python3.6 /tmp/tmp_m_4grzv.py removing /tmp/tmp_m_4grzv.py running install_egg_info running egg_info creating igakit.egg-info writing igakit.egg-info/PKG-INFO writing dependency_links to igakit.egg-info/dependency_links.txt writing requirements to igakit.egg-info/requires.txt writing top-level names to igakit.egg-info/top_level.txt writing manifest file 'igakit.egg-info/SOURCES.txt' reading manifest file 'igakit.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'igakit.egg-info/SOURCES.txt' Copying igakit.egg-info to /construction/math/py-igakit/stage/usr/local/lib/python3.6/site-packages/igakit-0.1-py3.6.egg-info running install_scripts running install_clib customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmph_qrnu7z/tmp creating /tmp/tmph_qrnu7z/tmp/tmph_qrnu7z compile options: '-MMD -MF /tmp/tmph_qrnu7z/file.c.d -c' cc: /tmp/tmph_qrnu7z/file.c writing list of installed files to '/construction/math/py-igakit/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-igakit-g20180107 file sizes/checksums [36]: . done packing files [36]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 21 JUL 2018 at 18:51:29 UTC Duration: 00:00:51