=> Building biology/p5-AcePerl Started : Thursday, 7 JUN 2018 at 05:49:00 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.242.g757c0-DEVELOPMENT #30: Tue May 8 14:06:27 PDT 2018 root@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.2-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.2-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/p5-AcePerl XDG_CONFIG_HOME=/construction/biology/p5-AcePerl HOME=/construction/biology/p5-AcePerl TMPDIR="/tmp" PATH=/construction/biology/p5-AcePerl/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- INSTALLDIRS="site" CC="cc" CCFLAGS="-pipe -O2 -fno-strict-aliasing" LD="cc" PREFIX="/usr/local" INSTALLPRIVLIB="/usr/local/lib" INSTALLARCHLIB="/usr/local/lib" -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/p5-AcePerl XDG_CONFIG_HOME=/construction/biology/p5-AcePerl HOME=/construction/biology/p5-AcePerl TMPDIR="/tmp" PATH=/construction/biology/p5-AcePerl/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/p5-AcePerl/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" OSREL=5.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.26.2 PERL_VER=5.26 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.26 PROFILE="@comment " DOCSDIR="share/doc/AcePerl" EXAMPLESDIR="share/examples/AcePerl" DATADIR="share/AcePerl" WWWDIR="www/AcePerl" ETCDIR="etc/AcePerl" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/AcePerl DOCSDIR=/usr/local/share/doc/AcePerl EXAMPLESDIR=/usr/local/share/examples/AcePerl WWWDIR=/usr/local/www/AcePerl ETCDIR=/usr/local/etc/AcePerl -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.2 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.26.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500200 OSVERSION=9999999 OSREL=5.2 _OSRELEASE=5.2-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> p5-AcePerl-1.92_5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz Installing pkg-1.10.5_1... Extracting pkg-1.10.5_1: .......... done ===> p5-AcePerl-1.92_5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of p5-AcePerl-1.92_5 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-AcePerl-1.92_5 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-AcePerl-1.92_5 for building => SHA256 Checksum OK for AcePerl-1.92.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-AcePerl-1.92_5 for building ===> Extracting for p5-AcePerl-1.92_5 ===> License ART10 GPLv1+ accepted by the user ===> Fetching all distfiles required by p5-AcePerl-1.92_5 for building => SHA256 Checksum OK for AcePerl-1.92.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for p5-AcePerl-1.92_5 ===> Applying ports patches for p5-AcePerl-1.92_5 ===> Applying dragonfly patches for p5-AcePerl-1.92_5 /usr/bin/sed -e 's@FREEBSD@DRAGONFLY@g' -e 's@XX__CC__XX@cc -DPIC -fPIC @g' -e "s@/usr/X11R6/@/usr/local/@g" < /xports/biology/p5-AcePerl/files/FREEBSD_DEF > /construction/biology/p5-AcePerl/AcePerl-1.92/acelib/wmake/DRAGONFLY_DEF -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> p5-AcePerl-1.92_5 depends on package: p5-Cache-Cache>=0 - not found ===> Installing existing package /packages/All/p5-Cache-Cache-1.08.txz Installing p5-Cache-Cache-1.08... `-- Installing p5-Cache-2.11... | `-- Installing p5-File-NFSLock-1.21_1... | | `-- Installing perl5-5.26.2... | | `-- Extracting perl5-5.26.2: .......... done | `-- Extracting p5-File-NFSLock-1.21_1: ....... done | `-- Installing p5-Heap-0.80_1... | `-- Extracting p5-Heap-0.80_1: .......... done | `-- Installing p5-IO-String-1.08_1... | `-- Extracting p5-IO-String-1.08_1: ....... done | `-- Installing p5-TimeDate-2.30_2,1... | `-- Extracting p5-TimeDate-2.30_2,1: .......... done `-- Extracting p5-Cache-2.11: .......... done `-- Installing p5-Digest-SHA1-2.13_1... `-- Extracting p5-Digest-SHA1-2.13_1: ........ done `-- Installing p5-Error-0.17026... `-- Extracting p5-Error-0.17026: ......... done `-- Installing p5-IPC-ShareLite-0.17_1... `-- Extracting p5-IPC-ShareLite-0.17_1: ......... done Extracting p5-Cache-Cache-1.08: .......... done Message from perl5-5.26.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> p5-AcePerl-1.92_5 depends on package: p5-Cache-Cache>=0 - found ===> Returning to build of p5-AcePerl-1.92_5 ===> p5-AcePerl-1.92_5 depends on package: perl5>=5.26<5.27 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for p5-AcePerl-1.92_5 Checking if your kit is complete... Looks good Writing MYMETA.yml and MYMETA.json Using DRAGONFLY definitions to build ace library. Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for Ace Writing MYMETA.yml and MYMETA.json -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for p5-AcePerl-1.92_5 cp Ace/Browser/GeneSubs.pm blib/lib/Ace/Browser/GeneSubs.pm cp Ace/Sequence/Feature.pm blib/lib/Ace/Sequence/Feature.pm AutoSplitting blib/lib/Ace/Sequence/Feature.pm (blib/lib/auto/Ace/Sequence/Feature) cp Ace/Sequence/Gene.pm blib/lib/Ace/Sequence/Gene.pm cp Ace/Iterator.pm blib/lib/Ace/Iterator.pm cp Ace/SocketServer.pm blib/lib/Ace/SocketServer.pm cp Ace/Sequence/Multi.pm blib/lib/Ace/Sequence/Multi.pm cp Ace/Graphics/GlyphFactory.pm blib/lib/Ace/Graphics/GlyphFactory.pm cp Ace/Graphics/Panel.pm blib/lib/Ace/Graphics/Panel.pm cp Ace/Model.pm blib/lib/Ace/Model.pm cp Ace/Sequence/FeatureList.pm blib/lib/Ace/Sequence/FeatureList.pm cp Ace/Graphics/Glyph/segments.pm blib/lib/Ace/Graphics/Glyph/segments.pm cp Ace/Graphics/Glyph.pm blib/lib/Ace/Graphics/Glyph.pm cp GFF/Filehandle.pm blib/lib/GFF/Filehandle.pm cp Ace/Object/Wormbase.pm blib/lib/Ace/Object/Wormbase.pm cp Ace/Browser/SiteDefs.pm blib/lib/Ace/Browser/SiteDefs.pm cp Ace/Graphics/Glyph/group.pm blib/lib/Ace/Graphics/Glyph/group.pm cp Ace/Browser/SearchSubs.pm blib/lib/Ace/Browser/SearchSubs.pm cp Ace/Graphics/Glyph/transcript.pm blib/lib/Ace/Graphics/Glyph/transcript.pm cp Ace/Graphics/Glyph/triangle.pm blib/lib/Ace/Graphics/Glyph/triangle.pm cp Ace/Browser/TreeSubs.pm blib/lib/Ace/Browser/TreeSubs.pm cp Ace/Graphics/Glyph/anchored_arrow.pm blib/lib/Ace/Graphics/Glyph/anchored_arrow.pm cp Ace/Sequence/GappedAlignment.pm blib/lib/Ace/Sequence/GappedAlignment.pm cp Ace/Graphics/Track.pm blib/lib/Ace/Graphics/Track.pm cp Ace/Local.pm blib/lib/Ace/Local.pm cp Ace/Graphics/Glyph/line.pm blib/lib/Ace/Graphics/Glyph/line.pm cp Ace/Sequence.pm blib/lib/Ace/Sequence.pm AutoSplitting blib/lib/Ace/Sequence.pm (blib/lib/auto/Ace/Sequence) cp Ace.pm blib/lib/Ace.pm AutoSplitting blib/lib/Ace.pm (blib/lib/auto/Ace) cp Ace/Sequence/Homol.pm blib/lib/Ace/Sequence/Homol.pm cp Ace/Graphics/Glyph/arrow.pm blib/lib/Ace/Graphics/Glyph/arrow.pm cp Ace/Graphics/Fk.pm blib/lib/Ace/Graphics/Fk.pm cp Ace/Graphics/Glyph/toomany.pm blib/lib/Ace/Graphics/Glyph/toomany.pm cp Ace/Graphics/Glyph/dot.pm blib/lib/Ace/Graphics/Glyph/dot.pm cp Ace/Graphics/Glyph/graded_segments.pm blib/lib/Ace/Graphics/Glyph/graded_segments.pm cp Ace/Browser/AceSubs.pm blib/lib/Ace/Browser/AceSubs.pm cp Ace/Graphics/Glyph/box.pm blib/lib/Ace/Graphics/Glyph/box.pm cp Ace/Graphics/Glyph/ex.pm blib/lib/Ace/Graphics/Glyph/ex.pm cp Ace/Sequence/Transcript.pm blib/lib/Ace/Sequence/Transcript.pm cp Ace/Graphics/Glyph/crossbox.pm blib/lib/Ace/Graphics/Glyph/crossbox.pm cp Ace/Graphics/Glyph/primers.pm blib/lib/Ace/Graphics/Glyph/primers.pm cp Ace/Object.pm blib/lib/Ace/Object.pm AutoSplitting blib/lib/Ace/Object.pm (blib/lib/auto/Ace/Object) cp Ace/Graphics/Glyph/span.pm blib/lib/Ace/Graphics/Glyph/span.pm cp Freesubs.pm ../blib/lib/Ace/Freesubs.pm Running Mkbootstrap for Freesubs () chmod 644 "Freesubs.bs" "/usr/local/bin/perl5.26.2" -MExtUtils::Command::MM -e 'cp_nonempty' -- Freesubs.bs ../blib/arch/auto/Ace/Freesubs/Freesubs.bs 644 "/usr/local/bin/perl5.26.2" "/usr/local/lib/perl5/5.26/ExtUtils/xsubpp" -noprototypes -typemap '/usr/local/lib/perl5/5.26/ExtUtils/typemap' Freesubs.xs > Freesubs.xsc mv Freesubs.xsc Freesubs.c cc -c -I./acelib/wh -DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_FORTIFY_SOURCE=2 -pipe -O2 -fno-strict-aliasing -DVERSION=\"1.00\" -DXS_VERSION=\"1.00\" -DPIC -fPIC "-I/usr/local/lib/perl5/5.26/mach/CORE" Freesubs.c rm -f ../blib/arch/auto/Ace/Freesubs/Freesubs.so cc -shared -L/usr/local/lib/perl5/5.26/mach/CORE -lperl -L/usr/local/lib -fstack-protector-strong Freesubs.o -o ../blib/arch/auto/Ace/Freesubs/Freesubs.so -lc chmod 755 ../blib/arch/auto/Ace/Freesubs/Freesubs.so cp RPC.pm ../blib/lib/Ace/RPC.pm cd ../acelib && make ACEDB_MACHINE=DRAGONFLY all cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c freesubs.c In file included from freesubs.c:25:0: ./wh/version.h:111:20: warning: 'ut_copyright_string' defined but not used [-Wunused-variable] static const char *ut_copyright_string = \ ^ freesubs.c:38:1: note: in expansion of macro 'UT_COPYRIGHT_STRING' UT_COPYRIGHT_STRING(FREE_TITLE, FREE_VERSION, FREE_RELEASE, FREE_UPDATE, FREE_DESC) ^ cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c freeout.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c messubs.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c memsubs.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c arraysub.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c liste.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c filsubs.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c heap.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c timesubs.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c bump.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c randsubs.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c call.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c menu.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c dict.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c helpsubs.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c texthelp.c texthelp.c: In function 'printTextSection': texthelp.c:213:16: warning: variable 'currentLink' set but not used [-Wunused-but-set-variable] static char *currentLink ; ^ texthelp.c:210:5: warning: variable 'MODE_HEADER' set but not used [-Wunused-but-set-variable] MODE_HEADER=FALSE, ^ texthelp.c:209:5: warning: variable 'MODE_HREF' set but not used [-Wunused-but-set-variable] MODE_HREF=FALSE, ^ rpcgen -b -I -K -1 rpcace.x cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -c aceclientlib.c aceclientlib.c: In function 'wakeUp': aceclientlib.c:44:14: warning: variable 'sig' set but not used [-Wunused-but-set-variable] static int sig = 0 ; ^ cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c rpcace_clnt.c cc -DPIC -fPIC -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -fPIC -I. -I./wh -DDRAGONFLY -c -pipe -O2 -fno-strict-aliasing -g -Wall -DACEDB4 -c rpcace_xdr.c ar rlu libaceperl.a freesubs.o freeout.o messubs.o memsubs.o arraysub.o liste.o filsubs.o heap.o timesubs.o bump.o randsubs.o call.o menu.o dict.o helpsubs.o texthelp.o aceclientlib.o rpcace_clnt.o rpcace_xdr.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') /usr/libexec/binutils227/elf/ar: creating libaceperl.a if ( true ) then ranlib libaceperl.a; fi Running Mkbootstrap for RPC () chmod 644 "RPC.bs" "/usr/local/bin/perl5.26.2" -MExtUtils::Command::MM -e 'cp_nonempty' -- RPC.bs ../blib/arch/auto/Ace/RPC/RPC.bs 644 "/usr/local/bin/perl5.26.2" "/usr/local/lib/perl5/5.26/ExtUtils/xsubpp" -noprototypes -typemap '/usr/local/lib/perl5/5.26/ExtUtils/typemap' RPC.xs > RPC.xsc mv RPC.xsc RPC.c cc -c -I./acelib/wh -I../acelib/wh -DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_FORTIFY_SOURCE=2 -pipe -O2 -fno-strict-aliasing -DVERSION=\"1.00\" -DXS_VERSION=\"1.00\" -DPIC -fPIC "-I/usr/local/lib/perl5/5.26/mach/CORE" RPC.c rm -f ../blib/arch/auto/Ace/RPC/RPC.so cc -shared -L/usr/local/lib/perl5/5.26/mach/CORE -lperl -L/usr/local/lib -fstack-protector-strong RPC.o -o ../blib/arch/auto/Ace/RPC/RPC.so ../acelib/libaceperl.a -lc filsubs.c:496: warning: warning: tempnam() possibly used unsafely; consider using mkstemp() chmod 755 ../blib/arch/auto/Ace/RPC/RPC.so "/usr/local/bin/perl5.26.2" "-Iblib/arch" "-Iblib/lib" util/ace.PLS util/ace.pl Extracting ace.pl (with variable substitutions) cp util/ace.pl blib/script/ace.pl "/usr/local/bin/perl5.26.2" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/ace.pl Manifying 1 pod document Manifying 35 pod documents "/usr/local/bin/perl5.26.2" "-Iblib/arch" "-Iblib/lib" make_docs.PLS .docs Creating HTML documentation in docs... ....done! "/usr/local/bin/perl5.26.2" "-Iblib/arch" "-Iblib/lib" util/install.PLS util/install.pl Extracting install.pl (with variable substitutions) -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> p5-AcePerl-1.92_5 depends on package: p5-Cache-Cache>=0 - found ===> p5-AcePerl-1.92_5 depends on package: perl5>=5.26<5.27 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for p5-AcePerl-1.92_5 ===> Generating temporary packing list "/usr/local/bin/perl5.26.2" -MExtUtils::Command::MM -e 'cp_nonempty' -- Freesubs.bs ../blib/arch/auto/Ace/Freesubs/Freesubs.bs 644 "/usr/local/bin/perl5.26.2" -MExtUtils::Command::MM -e 'cp_nonempty' -- RPC.bs ../blib/arch/auto/Ace/RPC/RPC.bs 644 Manifying 1 pod document Manifying 35 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/RPC/RPC.so Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Freesubs/Freesubs.so Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/GFF/Filehandle.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Model.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Iterator.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/SocketServer.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/RPC.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Freesubs.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Local.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Sequence.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Object.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/GlyphFactory.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Panel.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Track.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Fk.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/segments.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/anchored_arrow.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/toomany.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/span.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/dot.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/transcript.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/group.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/ex.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/graded_segments.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/primers.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/triangle.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/box.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/line.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/arrow.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Graphics/Glyph/crossbox.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Object/Wormbase.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Browser/GeneSubs.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Browser/AceSubs.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Browser/SearchSubs.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Browser/SiteDefs.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Browser/TreeSubs.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Sequence/FeatureList.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Sequence/Gene.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Sequence/Feature.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Sequence/Multi.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Sequence/Transcript.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Sequence/GappedAlignment.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/Ace/Sequence/Homol.pm Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/parse_file.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/status.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/title.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/put.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/class_count.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/find.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/grep.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/ping.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/datetime.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/_unregister_iterator.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/autosplit.ix Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/_restore_iterator.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/classes.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/parse_longtext.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/layout.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/freeprotect.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/new.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/_save_iterator.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/split.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/_register_iterator.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/pick.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/date_style.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/auto_save.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/parse.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/fetch_many.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/debug.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/version.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/date.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/timestamps.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Sequence/autosplit.ix Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Sequence/Feature/autosplit.ix Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/asTable.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/_asAce.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/_default_makeHTML.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/isComment.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/_asXML.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/asGif.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/asPeptide.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/add_row.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/replace.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/asAce.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/_special_dump.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/_to_ace_date.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/escapeXML.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/kill.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/_xmlNumber.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/debug.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/asString.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/tags.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/asXML.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/_asTable.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/date_style.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/timestamp.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/_insert.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/asHTML.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/rollback.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/commit.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/autosplit.ix Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/asDNA.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/add_tree.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/delete.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/_asHTML.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Object/comment.al Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man1/ace.pl.1 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Sequence::GappedAlignment.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Sequence::Transcript.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Sequence.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Model.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Sequence::Homol.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Track.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Sequence::Multi.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Sequence::Feature.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Local.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Sequence::FeatureList.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Sequence::Gene.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Iterator.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Object.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Panel.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::arrow.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::dot.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::group.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::span.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::GlyphFactory.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::line.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Browser::AceSubs.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::transcript.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Fk.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Browser::SiteDefs.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::primers.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::segments.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::triangle.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::anchored_arrow.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::ex.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::graded_segments.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::box.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Browser::SearchSubs.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace::Graphics::Glyph::toomany.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/man/man3/Ace.3 Installing /construction/biology/p5-AcePerl/stage/usr/local/bin/ace.pl /usr/bin/strip /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/Freesubs/Freesubs.so /usr/bin/strip /construction/biology/p5-AcePerl/stage/usr/local/lib/perl5/site_perl/mach/5.26/auto/Ace/RPC/RPC.so ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for p5-AcePerl-1.92_5 file sizes/checksums [150]: .. done packing files [150]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 7 JUN 2018 at 05:49:35 UTC Duration: 00:00:35