=> Building science/pycdf@py27 Started : Thursday, 19 APR 2018 at 06:00:46 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.81.g32506c-DEVELOPMENT #29: Tue Apr 10 08:49:52 PDT 2018 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.0-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.0-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/pycdf XDG_CONFIG_HOME=/construction/science/pycdf HOME=/construction/science/pycdf TMPDIR="/tmp" PATH=/construction/science/pycdf/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/pycdf XDG_CONFIG_HOME=/construction/science/pycdf HOME=/construction/science/pycdf TMPDIR="/tmp" PATH=/construction/science/pycdf/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" "-L/usr/local/lib"" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/pycdf/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pycdf" EXAMPLESDIR="share/examples/pycdf" DATADIR="share/pycdf" WWWDIR="www/pycdf" ETCDIR="etc/pycdf" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pycdf DOCSDIR=/usr/local/share/doc/pycdf EXAMPLESDIR=/usr/local/share/examples/pycdf WWWDIR=/usr/local/www/pycdf ETCDIR=/usr/local/etc/pycdf -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.0 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500000 OSVERSION=9999999 OSREL=5.0 _OSRELEASE=5.0-SYNTH -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> pycdf-0.6.3_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5.txz Installing pkg-1.10.5... Extracting pkg-1.10.5: .......... done ===> pycdf-0.6.3_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of pycdf-0.6.3_7 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by pycdf-0.6.3_7 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by pycdf-0.6.3_7 for building => SHA256 Checksum OK for pycdf-0.6-3b.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by pycdf-0.6.3_7 for building ===> Extracting for pycdf-0.6.3_7 => SHA256 Checksum OK for pycdf-0.6-3b.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for pycdf-0.6.3_7 ===> Applying ports patches for pycdf-0.6.3_7 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> pycdf-0.6.3_7 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.13.3_2,1.txz Installing py27-numpy-1.13.3_2,1... `-- Installing gcc5-5.5.0_2... | `-- Installing binutils-2.30_2,1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Extracting binutils-2.30_2,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0... | | `-- Installing mpfr-3.1.6... | | `-- Extracting mpfr-3.1.6: .......... done | `-- Extracting mpc-1.1.0: ...... done `-- Extracting gcc5-5.5.0_2: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing py27-setuptools-39.0.1... | `-- Installing python27-2.7.14_1... | | `-- Installing expat-2.2.5... | | `-- Extracting expat-2.2.5: .......... done | | `-- Installing libffi-3.2.1_2... | | `-- Extracting libffi-3.2.1_2: .......... done | | `-- Installing libressl-2.6.4... | | `-- Extracting libressl-2.6.4: .......... done | | `-- Installing ncurses-6.0.0s20171223_1... | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Installing readline-7.0.3_1... | | `-- Extracting readline-7.0.3_1: .......... done | `-- Extracting python27-2.7.14_1: .......... done `-- Extracting py27-setuptools-39.0.1: .......... done `-- Installing suitesparse-4.0.2_8... `-- Extracting suitesparse-4.0.2_8: .......... done Extracting py27-numpy-1.13.3_2,1: .......... done Message from gcc5-5.5.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from python27-2.7.14_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> pycdf-0.6.3_7 depends on package: py27-numpy>0 - found ===> Returning to build of pycdf-0.6.3_7 ===> pycdf-0.6.3_7 depends on package: py27-setuptools>0 - found ===> pycdf-0.6.3_7 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> pycdf-0.6.3_7 depends on shared library: libnetcdf.so - not found ===> Installing existing package /packages/All/netcdf-4.6.1.txz Installing netcdf-4.6.1... `-- Installing curl-7.59.0... | `-- Installing ca_root_nss-3.36... | `-- Extracting ca_root_nss-3.36: ........ done | `-- Installing krb5-1.16_1... | | `-- Installing pkgconf-1.4.2,1... | | `-- Extracting pkgconf-1.4.2,1: .......... done | `-- Extracting krb5-1.16_1: .......... done | `-- Installing libnghttp2-1.31.0... | `-- Extracting libnghttp2-1.31.0: .......... done `-- Extracting curl-7.59.0: .......... done `-- Installing hdf-szip-2.1_2... `-- Extracting hdf-szip-2.1_2: ........ done `-- Installing hdf5-1.10.1_1... `-- Extracting hdf5-1.10.1_1: .......... done Extracting netcdf-4.6.1: .......... done Message from ca_root_nss-3.36: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> pycdf-0.6.3_7 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Returning to build of pycdf-0.6.3_7 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for pycdf-0.6.3_7 /usr/local/lib/python2.7/site-packages/setuptools/dist.py:406: UserWarning: The version specified ('0.6-3b') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for pycdf-0.6.3_7 /usr/local/lib/python2.7/site-packages/setuptools/dist.py:406: UserWarning: The version specified ('0.6-3b') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version running build running build_py creating build creating build/lib.dragonfly-5.0-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf copying pycdf/pycdf.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf copying pycdf/__init__.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf copying pycdf/pycdfext_array.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf copying pycdf/pycdfext.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf running build_ext building 'pycdf._pycdfext' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf/pycdfext creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf/pycdfext/numpy compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: pycdf/pycdfext/numpy/pycdfext_wrap.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h:1, from pycdf/pycdfext/numpy/pycdfext_wrap.c:863: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -L/usr/local/lib -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf/pycdfext/numpy/pycdfext_wrap.o -L/usr/local/lib -L/usr/local/lib -lnetcdf -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf/_pycdfext.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> pycdf-0.6.3_7 depends on package: py27-numpy>0 - found ===> pycdf-0.6.3_7 depends on package: py27-setuptools>0 - found ===> pycdf-0.6.3_7 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for pycdf-0.6.3_7 ===> Generating temporary packing list /usr/local/lib/python2.7/site-packages/setuptools/dist.py:406: UserWarning: The version specified ('0.6-3b') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version running install running build running build_py copying pycdf/pycdfext_array.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf copying pycdf/pycdfext.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf running build_ext running install_lib creating /construction/science/pycdf/stage/usr/local/lib/python2.7 creating /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages creating /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf/pycdfext.py -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf/__init__.py -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf/pycdfext_array.py -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf/pycdf.py -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/pycdf/_pycdfext.so -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf byte-compiling /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/pycdfext.py to pycdfext.pyc byte-compiling /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/__init__.py to __init__.pyc byte-compiling /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/pycdfext_array.py to pycdfext_array.pyc byte-compiling /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/pycdf.py to pycdf.pyc writing byte-compilation script '/tmp/tmp0278EM.py' /usr/local/bin/python2.7 -O /tmp/tmp0278EM.py removing /tmp/tmp0278EM.py running install_egg_info running egg_info creating pycdf.egg-info writing pycdf.egg-info/PKG-INFO writing top-level names to pycdf.egg-info/top_level.txt writing dependency_links to pycdf.egg-info/dependency_links.txt writing manifest file 'pycdf.egg-info/SOURCES.txt' reading manifest file 'pycdf.egg-info/SOURCES.txt' writing manifest file 'pycdf.egg-info/SOURCES.txt' Copying pycdf.egg-info to /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf-0.6_3b-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/pycdf/.PLIST.pymodtmp' /usr/bin/strip /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for pycdf-0.6.3_7 file sizes/checksums [17]: . done packing files [17]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 19 APR 2018 at 06:01:16 UTC Duration: 00:00:30