=> Building science/py-h5py@py27 Started : Wednesday, 18 APR 2018 at 09:43:30 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.81.g32506c-DEVELOPMENT #29: Tue Apr 10 08:49:52 PDT 2018 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.0-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.0-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for py27-h5py-2.7.1_1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/py-h5py XDG_CONFIG_HOME=/construction/science/py-h5py HOME=/construction/science/py-h5py TMPDIR="/tmp" PATH=/construction/science/py-h5py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-h5py XDG_CONFIG_HOME=/construction/science/py-h5py HOME=/construction/science/py-h5py TMPDIR="/tmp" PATH=/construction/science/py-h5py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-h5py/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py27-h5py" EXAMPLESDIR="share/examples/py27-h5py" DATADIR="share/py27-h5py" WWWDIR="www/py27-h5py" ETCDIR="etc/py27-h5py" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py27-h5py DOCSDIR=/usr/local/share/doc/py27-h5py EXAMPLESDIR=/usr/local/share/examples/py27-h5py WWWDIR=/usr/local/www/py27-h5py ETCDIR=/usr/local/etc/py27-h5py -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.0 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500000 OSVERSION=9999999 OSREL=5.0 _OSRELEASE=5.0-SYNTH -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-h5py-2.7.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5.txz Installing pkg-1.10.5... Extracting pkg-1.10.5: .......... done ===> py27-h5py-2.7.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-h5py-2.7.1_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-h5py-2.7.1_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-h5py-2.7.1_1 for building => SHA256 Checksum OK for h5py-2.7.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-h5py-2.7.1_1 for building ===> Extracting for py27-h5py-2.7.1_1 => SHA256 Checksum OK for h5py-2.7.1.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-h5py-2.7.1_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-h5py-2.7.1_1 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.13.3_2,1.txz Installing py27-numpy-1.13.3_2,1... `-- Installing gcc5-5.5.0_2... | `-- Installing binutils-2.30_2,1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Extracting binutils-2.30_2,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0... | | `-- Installing mpfr-3.1.6... | | `-- Extracting mpfr-3.1.6: .......... done | `-- Extracting mpc-1.1.0: ...... done `-- Extracting gcc5-5.5.0_2: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing py27-setuptools-39.0.1... | `-- Installing python27-2.7.14_1... | | `-- Installing expat-2.2.5... | | `-- Extracting expat-2.2.5: .......... done | | `-- Installing libffi-3.2.1_2... | | `-- Extracting libffi-3.2.1_2: .......... done | | `-- Installing libressl-2.6.4... | | `-- Extracting libressl-2.6.4: .......... done | | `-- Installing ncurses-6.0.0s20171223_1... | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Installing readline-7.0.3_1... | | `-- Extracting readline-7.0.3_1: .......... done | `-- Extracting python27-2.7.14_1: .......... done `-- Extracting py27-setuptools-39.0.1: .......... done `-- Installing suitesparse-4.0.2_8... `-- Extracting suitesparse-4.0.2_8: .......... done Extracting py27-numpy-1.13.3_2,1: .......... done Message from gcc5-5.5.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from python27-2.7.14_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> py27-h5py-2.7.1_1 depends on package: py27-numpy>0 - found ===> Returning to build of py27-h5py-2.7.1_1 ===> py27-h5py-2.7.1_1 depends on package: py27-pkgconfig>=0 - not found ===> Installing existing package /packages/All/py27-pkgconfig-1.3.1.txz Installing py27-pkgconfig-1.3.1... Extracting py27-pkgconfig-1.3.1: .......... done ===> py27-h5py-2.7.1_1 depends on package: py27-pkgconfig>=0 - found ===> Returning to build of py27-h5py-2.7.1_1 ===> py27-h5py-2.7.1_1 depends on package: py27-six>=0 - not found ===> Installing existing package /packages/All/py27-six-1.11.0.txz Installing py27-six-1.11.0... Extracting py27-six-1.11.0: .......... done ===> py27-h5py-2.7.1_1 depends on package: py27-six>=0 - found ===> Returning to build of py27-h5py-2.7.1_1 ===> py27-h5py-2.7.1_1 depends on executable: cython-2.7 - not found ===> Installing existing package /packages/All/py27-cython-0.26.txz Installing py27-cython-0.26... Extracting py27-cython-0.26: .......... done ===> py27-h5py-2.7.1_1 depends on executable: cython-2.7 - found ===> Returning to build of py27-h5py-2.7.1_1 ===> py27-h5py-2.7.1_1 depends on package: py27-setuptools>0 - found ===> py27-h5py-2.7.1_1 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py27-h5py-2.7.1_1 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.1_1.txz Installing hdf5-1.10.1_1... `-- Installing hdf-szip-2.1_2... `-- Extracting hdf-szip-2.1_2: ........ done Extracting hdf5-1.10.1_1: .......... done ===> py27-h5py-2.7.1_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of py27-h5py-2.7.1_1 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-h5py-2.7.1_1 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-h5py-2.7.1_1 running build running build_py creating build creating build/lib.dragonfly-5.0-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py copying h5py/ipy_completer.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py copying h5py/highlevel.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py copying h5py/version.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py copying h5py/__init__.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py creating build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/base.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/selections.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/filters.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/files.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/dims.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/group.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/compat.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl creating build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests copying h5py/tests/__init__.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests copying h5py/tests/common.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests creating build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_objects.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_dataset.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_datatype.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_group.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_selections.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_dimension_scales.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_h5d_direct_chunk_write.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_h5t.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_h5p.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_h5f.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_file.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_file_image.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_attrs_data.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_attrs.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_base.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/__init__.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_slicing.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old copying h5py/tests/old/test_h5.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old creating build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl copying h5py/tests/hl/test_dims_dimensionproxy.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl copying h5py/tests/hl/test_file.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl copying h5py/tests/hl/test_threads.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl copying h5py/tests/hl/__init__.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl copying h5py/tests/hl/test_attribute_create.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl copying h5py/tests/hl/test_dataset_swmr.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl copying h5py/tests/hl/test_dataset_getitem.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl copying h5py/tests/hl/test_datatype.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl running build_ext Autodetected HDF5 1.10.1 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.1' MPI Enabled: False Rebuild Required: True ******************************************************************************** Executing api_gen rebuild of defs Executing cythonize() ./h5py/api_types_ext.pxd: cannot find cimported module 'mpi4py.MPI' /construction/science/py-h5py/h5py-2.7.1/h5py/h5p.pyx: cannot find cimported module 'mpi4py.libmpi' /construction/science/py-h5py/h5py-2.7.1/h5py/h5p.pyx: cannot find cimported module 'mpi4py.mpi_c' [ 1/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/_conv.pyx [ 2/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/_errors.pyx [ 3/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/_objects.pyx [ 4/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/_proxy.pyx [ 5/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/defs.pyx [ 6/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5.pyx [ 7/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5a.pyx [ 8/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5ac.pyx [ 9/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5d.pyx [10/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5ds.pyx [11/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5f.pyx [12/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5fd.pyx [13/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5g.pyx [14/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5i.pyx [15/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5l.pyx [16/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5o.pyx [17/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5p.pyx [18/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5r.pyx [19/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5s.pyx [20/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5t.pyx [21/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/h5z.pyx [22/22] Cythonizing /construction/science/py-h5py/h5py-2.7.1/h5py/utils.pyx building 'h5py.defs' extension creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1 creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/defs.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/defs.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/defs.c:521: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/defs.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/defs.so building 'h5py._errors' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/_errors.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/_errors.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/_errors.c:521: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ /construction/science/py-h5py/h5py-2.7.1/h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_walk_cb': /construction/science/py-h5py/h5py-2.7.1/h5py/_errors.c:1124:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_3 = (__pyx_v_desc[0]).desc; ^ /construction/science/py-h5py/h5py-2.7.1/h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_set_exception': /construction/science/py-h5py/h5py-2.7.1/h5py/_errors.c:1409:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ /construction/science/py-h5py/h5py-2.7.1/h5py/_errors.c:1492:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/_errors.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_errors.so building 'h5py._objects' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/_objects.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/_objects.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/_objects.c:521: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/_objects.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_objects.so building 'h5py._proxy' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/_proxy.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/_proxy.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/_proxy.c:521: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/_proxy.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_proxy.so building 'h5py.h5fd' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5fd.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5fd.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5fd.c:521: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5fd.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5fd.so building 'h5py.h5z' extension creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/lzf creating build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/lzf/lzf cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5z.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5z.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5z.c:524: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/lzf/lzf_filter.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/lzf/lzf_filter.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/lzf/lzf/lzf_c.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/lzf/lzf/lzf_c.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/lzf/lzf/lzf_d.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/lzf/lzf/lzf_d.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5z.o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/lzf/lzf_filter.o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/lzf/lzf/lzf_c.o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/lzf/lzf/lzf_d.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5z.so building 'h5py.h5' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5.c:521: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5.so building 'h5py.h5i' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5i.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5i.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5i.c:521: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5i.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5i.so building 'h5py.h5r' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5r.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5r.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5r.c:521: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5r.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5r.so building 'h5py.utils' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/utils.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/utils.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/utils.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/utils.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/utils.so building 'h5py._conv' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/_conv.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/_conv.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/_conv.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/_conv.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_conv.so building 'h5py.h5t' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5t.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5t.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5t.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5t.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5t.so building 'h5py.h5s' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5s.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5s.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5s.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5s.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5s.so building 'h5py.h5p' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5p.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5p.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5p.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5p.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5p.so building 'h5py.h5d' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5d.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5d.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5d.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5d.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5d.so building 'h5py.h5a' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5a.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5a.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5a.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5a.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5a.so building 'h5py.h5f' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5f.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5f.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5f.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5f.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5f.so building 'h5py.h5g' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5g.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5g.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5g.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5g.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5g.so building 'h5py.h5l' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5l.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5l.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5l.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ /construction/science/py-h5py/h5py-2.7.1/h5py/h5l.c: In function '__pyx_pf_4h5py_3h5l_9LinkProxy_12get_val': /construction/science/py-h5py/h5py-2.7.1/h5py/h5l.c:3744:94: warning: passing argument 4 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ^ /construction/science/py-h5py/h5py-2.7.1/h5py/h5l.c:3744:94: note: expected 'const char **' but argument is of type 'char **' /construction/science/py-h5py/h5py-2.7.1/h5py/h5l.c:3744:120: warning: passing argument 5 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ^ /construction/science/py-h5py/h5py-2.7.1/h5py/h5l.c:3744:120: note: expected 'const char **' but argument is of type 'char **' cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5l.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5l.so building 'h5py.h5o' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5o.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5o.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5o.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5o.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5o.so building 'h5py.h5ds' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5ds.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5ds.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5ds.c:522: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5ds.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5ds.so building 'h5py.h5ac' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.7.1/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c /construction/science/py-h5py/h5py-2.7.1/h5py/h5ac.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5ac.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.7.1/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.7.1/h5py/h5ac.c:521: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-2.7/construction/science/py-h5py/h5py-2.7.1/h5py/h5ac.o -L/opt/local/include -L/usr/local/include -L/usr/local/lib -R/opt/local/include -R/usr/local/include -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5ac.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-h5py-2.7.1_1 depends on package: py27-numpy>0 - found ===> py27-h5py-2.7.1_1 depends on package: py27-six>=0 - found ===> py27-h5py-2.7.1_1 depends on package: py27-setuptools>0 - found ===> py27-h5py-2.7.1_1 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-h5py-2.7.1_1 ===> Generating temporary packing list running install running build running build_py running build_ext Autodetected HDF5 1.10.1 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.1' MPI Enabled: False Rebuild Required: False ******************************************************************************** Executing cythonize() ./h5py/api_types_ext.pxd: cannot find cimported module 'mpi4py.MPI' /construction/science/py-h5py/h5py-2.7.1/h5py/h5p.pyx: cannot find cimported module 'mpi4py.libmpi' /construction/science/py-h5py/h5py-2.7.1/h5py/h5p.pyx: cannot find cimported module 'mpi4py.mpi_c' running install_lib creating /construction/science/py-h5py/stage/usr/local/lib/python2.7 creating /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5a.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5ds.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5g.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5ac.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5o.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5s.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py creating /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests creating /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_attrs.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_dimension_scales.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_h5p.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_dataset.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_group.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_slicing.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_objects.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_h5t.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_selections.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_file_image.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_h5.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_base.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_h5d_direct_chunk_write.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_attrs_data.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_h5f.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/old/test_file.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old creating /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl/test_file.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl/test_datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl/test_threads.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl/test_dims_dimensionproxy.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl/test_dataset_swmr.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl/test_attribute_create.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/hl/test_dataset_getitem.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/tests/common.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/version.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/highlevel.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py creating /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/selections2.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/compat.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/files.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/base.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/dims.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/group.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/dataset.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/filters.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/selections.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_hl/attrs.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/ipy_completer.py -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_errors.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5p.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5r.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5l.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5fd.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5z.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5i.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5f.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_conv.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/utils.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_proxy.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/defs.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5d.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/h5t.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py copying build/lib.dragonfly-5.0-SYNTH-x86_64-2.7/h5py/_objects.so -> /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_attrs.py to test_attrs.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/__init__.py to __init__.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_dimension_scales.py to test_dimension_scales.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_h5p.py to test_h5p.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_dataset.py to test_dataset.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_group.py to test_group.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_slicing.py to test_slicing.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_objects.py to test_objects.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_h5t.py to test_h5t.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_selections.py to test_selections.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_file_image.py to test_file_image.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_h5.py to test_h5.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_datatype.py to test_datatype.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_base.py to test_base.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_h5d_direct_chunk_write.py to test_h5d_direct_chunk_write.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_attrs_data.py to test_attrs_data.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_h5f.py to test_h5f.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/old/test_file.py to test_file.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl/test_file.py to test_file.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl/test_datatype.py to test_datatype.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl/test_threads.py to test_threads.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl/__init__.py to __init__.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl/test_dims_dimensionproxy.py to test_dims_dimensionproxy.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl/test_dataset_swmr.py to test_dataset_swmr.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl/test_attribute_create.py to test_attribute_create.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/hl/test_dataset_getitem.py to test_dataset_getitem.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/__init__.py to __init__.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/tests/common.py to common.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/__init__.py to __init__.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/version.py to version.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/highlevel.py to highlevel.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/selections2.py to selections2.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/compat.py to compat.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/files.py to files.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/base.py to base.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/datatype.py to datatype.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/dims.py to dims.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/__init__.py to __init__.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/group.py to group.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/dataset.py to dataset.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/filters.py to filters.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/selections.py to selections.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/_hl/attrs.py to attrs.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/ipy_completer.py to ipy_completer.pyc writing byte-compilation script '/tmp/tmpdltIlB.py' /usr/local/bin/python2.7 -O /tmp/tmpdltIlB.py removing /tmp/tmpdltIlB.py running install_egg_info running egg_info writing requirements to h5py.egg-info/requires.txt writing h5py.egg-info/PKG-INFO writing top-level names to h5py.egg-info/top_level.txt writing dependency_links to h5py.egg-info/dependency_links.txt reading manifest file 'h5py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'docs/_build' no previously-included directories found matching 'docs_api/_build' warning: no previously-included files matching '.DS_Store' found under directory '*' warning: no previously-included files found matching 'ci' warning: no previously-included files found matching 'other' warning: no previously-included files found matching '.github' warning: no previously-included files matching '*' found under directory 'ci' warning: no previously-included files matching '*' found under directory 'other' warning: no previously-included files matching '*' found under directory '.github' warning: no previously-included files found matching 'pavement.py' warning: no previously-included files found matching '*.yml' writing manifest file 'h5py.egg-info/SOURCES.txt' Copying h5py.egg-info to /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py-2.7.1-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-h5py/.PLIST.pymodtmp' /usr/bin/strip /construction/science/py-h5py/stage/usr/local/lib/python2.7/site-packages/h5py/*.so install -m 0644 /construction/science/py-h5py/h5py-2.7.1/README.rst /construction/science/py-h5py/stage/usr/local/share/doc/py27-h5py cd /construction/science/py-h5py/h5py-2.7.1/docs/ && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/science/py-h5py/stage/usr/local/share/doc/py27-h5py cd /construction/science/py-h5py/h5py-2.7.1/examples/ && install -m 0644 multiprocessing_example.py swmr_multiprocess.py swmr_inotify_example.py threading_example.py /construction/science/py-h5py/stage/usr/local/share/examples/py27-h5py ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-h5py-2.7.1_1 file sizes/checksums [196]: .. done packing files [196]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 18 APR 2018 at 09:47:43 UTC Duration: 00:04:12