=> Building science/h5utils Started : Thursday, 19 APR 2018 at 05:30:54 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.81.g32506c-DEVELOPMENT #29: Tue Apr 10 08:49:52 PDT 2018 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.0-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.0-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for h5utils-1.13.1: OCTAVE=off: With Octave support ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/h5utils XDG_CONFIG_HOME=/construction/science/h5utils HOME=/construction/science/h5utils TMPDIR="/tmp" PATH=/construction/science/h5utils/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- --without-octave --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/h5utils XDG_CONFIG_HOME=/construction/science/h5utils HOME=/construction/science/h5utils TMPDIR="/tmp" PATH=/construction/science/h5utils/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -std=c++11" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/h5utils/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" OCTAVE="@comment " NO_OCTAVE="" OSREL=5.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/h5utils" EXAMPLESDIR="share/examples/h5utils" DATADIR="share/h5utils" WWWDIR="www/h5utils" ETCDIR="etc/h5utils" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- OCTAVE="@comment " NO_OCTAVE="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/h5utils DOCSDIR=/usr/local/share/doc/h5utils EXAMPLESDIR=/usr/local/share/examples/h5utils WWWDIR=/usr/local/www/h5utils ETCDIR=/usr/local/etc/h5utils -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.0 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500000 OSVERSION=9999999 OSREL=5.0 _OSRELEASE=5.0-SYNTH -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License MIT GPLv2 accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> h5utils-1.13.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5.txz Installing pkg-1.10.5... Extracting pkg-1.10.5: .......... done ===> h5utils-1.13.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of h5utils-1.13.1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License MIT GPLv2 accepted by the user ===> Fetching all distfiles required by h5utils-1.13.1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License MIT GPLv2 accepted by the user ===> Fetching all distfiles required by h5utils-1.13.1 for building => SHA256 Checksum OK for stevengj-h5utils-1.13.1_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License MIT GPLv2 accepted by the user ===> Fetching all distfiles required by h5utils-1.13.1 for building ===> Extracting for h5utils-1.13.1 => SHA256 Checksum OK for stevengj-h5utils-1.13.1_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for h5utils-1.13.1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> h5utils-1.13.1 depends on executable: gawk - not found ===> Installing existing package /packages/All/gawk-4.1.4_1.txz Installing gawk-4.1.4_1... `-- Installing gettext-runtime-0.19.8.1_1... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: .... done `-- Extracting gettext-runtime-0.19.8.1_1: .......... done `-- Installing libsigsegv-2.11... `-- Extracting libsigsegv-2.11: ........ done `-- Installing readline-7.0.3_1... | `-- Installing ncurses-6.0.0s20171223_1... | `-- Extracting ncurses-6.0.0s20171223_1: .......... done `-- Extracting readline-7.0.3_1: .......... done Extracting gawk-4.1.4_1: .......... done Message from libsigsegv-2.11: ==== Note that the stackoverflow handling functions of this library need procfs mounted on /proc. ==== ===> h5utils-1.13.1 depends on executable: gawk - found ===> Returning to build of h5utils-1.13.1 ===> h5utils-1.13.1 depends on executable: autoconf-2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_1.txz Installing autoconf-2.69_1... `-- Installing autoconf-wrapper-20131203... `-- Extracting autoconf-wrapper-20131203: .......... done `-- Installing m4-1.4.18,1... `-- Extracting m4-1.4.18,1: .......... done `-- Installing perl5-5.26.1... `-- Extracting perl5-5.26.1: .......... done Extracting autoconf-2.69_1: .......... done Message from perl5-5.26.1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> h5utils-1.13.1 depends on executable: autoconf-2.69 - found ===> Returning to build of h5utils-1.13.1 ===> h5utils-1.13.1 depends on executable: autoheader-2.69 - found ===> h5utils-1.13.1 depends on executable: autoreconf-2.69 - found ===> h5utils-1.13.1 depends on executable: aclocal-1.15 - not found ===> Installing existing package /packages/All/automake-1.15.1.txz Installing automake-1.15.1... `-- Installing automake-wrapper-20131203... `-- Extracting automake-wrapper-20131203: ...... done Extracting automake-1.15.1: .......... done ===> h5utils-1.13.1 depends on executable: aclocal-1.15 - found ===> Returning to build of h5utils-1.13.1 ===> h5utils-1.13.1 depends on executable: automake-1.15 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> h5utils-1.13.1 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.1_1.txz Installing hdf5-1.10.1_1... `-- Installing hdf-szip-2.1_2... `-- Extracting hdf-szip-2.1_2: ........ done Extracting hdf5-1.10.1_1: .......... done ===> h5utils-1.13.1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of h5utils-1.13.1 ===> h5utils-1.13.1 depends on shared library: libpng.so - not found ===> Installing existing package /packages/All/png-1.6.34.txz Installing png-1.6.34... Extracting png-1.6.34: .......... done ===> h5utils-1.13.1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> Returning to build of h5utils-1.13.1 ===> h5utils-1.13.1 depends on shared library: libmatheval.so - not found ===> Installing existing package /packages/All/libmatheval-1.1.11_2.txz Installing libmatheval-1.1.11_2... `-- Installing guile-1.8.8_3... | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing libltdl-2.4.6... | `-- Extracting libltdl-2.4.6: .......... done `-- Extracting guile-1.8.8_3: .......... done Extracting libmatheval-1.1.11_2: .......... done ===> h5utils-1.13.1 depends on shared library: libmatheval.so - found (/usr/local/lib/libmatheval.so) ===> Returning to build of h5utils-1.13.1 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for h5utils-1.13.1 configure.ac:10: installing './compile' configure.ac:3: installing './install-sh' configure.ac:3: installing './missing' Makefile.am: installing './depcomp' configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sin in -lm... yes checking for snprintf... (cached) yes checking for inflate in -lz... yes checking for png_create_write_struct in -lpng... yes checking for evaluator_get_variables in -lmatheval... yes checking for h4toh5... no checking for h5toh4... no checking for jpeg_start_compress in -ljpeg... no configure: WARNING: can't find libjpeg: won't be able to compile h5fromh4 or h4fromh5 checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking hdf.h usability... no checking hdf.h presence... no checking for hdf.h... no checking hdf/hdf.h usability... no checking hdf/hdf.h presence... no checking for hdf/hdf.h... no checking for H5Fopen in -lhdf5... yes checking for v5dCreate in -lv5d... no checking vis5d/v5d.h usability... no checking vis5d/v5d.h presence... no checking for vis5d/v5d.h... no checking vis5d+/v5d.h usability... no checking vis5d+/v5d.h presence... no checking for vis5d+/v5d.h... no checking for arpa/inet.h... (cached) yes checking for netinet/in.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for uint16_t... yes checking for uint32_t... yes checking for htons... yes checking size of float... 4 checking for htonl... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/man/h5topng.1 config.status: creating config.h config.status: executing depfiles commands -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for h5utils-1.13.1 --- all --- /usr/bin/make all-am --- h5totxt.o --- --- arrayh5.o --- --- h5utils.o --- --- h5fromtxt.o --- --- h5tovtk.o --- --- h5totxt.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5totxt.o -MD -MP -MF .deps/h5totxt.Tpo -c -o h5totxt.o h5totxt.c --- arrayh5.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT arrayh5.o -MD -MP -MF .deps/arrayh5.Tpo -c -o arrayh5.o arrayh5.c --- h5utils.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5utils.o -MD -MP -MF .deps/h5utils.Tpo -c -o h5utils.o h5utils.c --- h5tovtk.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5tovtk.o -MD -MP -MF .deps/h5tovtk.Tpo -c -o h5tovtk.o h5tovtk.c --- h5fromtxt.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5fromtxt.o -MD -MP -MF .deps/h5fromtxt.Tpo -c -o h5fromtxt.o h5fromtxt.c mv -f .deps/h5fromtxt.Tpo .deps/h5fromtxt.Po --- h5math.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5math.o -MD -MP -MF .deps/h5math.Tpo -c -o h5math.o h5math.c --- arrayh5.o --- mv -f .deps/arrayh5.Tpo .deps/arrayh5.Po --- h5topng.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5topng.o -MD -MP -MF .deps/h5topng.Tpo -c -o h5topng.o h5topng.c --- h5utils.o --- mv -f .deps/h5utils.Tpo .deps/h5utils.Po --- writepng.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT writepng.o -MD -MP -MF .deps/writepng.Tpo -c -o writepng.o writepng.c --- h5totxt.o --- mv -f .deps/h5totxt.Tpo .deps/h5totxt.Po --- h5cyl2cart.o --- cc -DHAVE_CONFIG_H -I. -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -MT h5cyl2cart.o -MD -MP -MF .deps/h5cyl2cart.Tpo -c -o h5cyl2cart.o h5cyl2cart.c --- h5math.o --- mv -f .deps/h5math.Tpo .deps/h5math.Po --- h5fromtxt --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5fromtxt h5fromtxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm --- h5totxt --- --- h5cyl2cart.o --- mv -f .deps/h5cyl2cart.Tpo .deps/h5cyl2cart.Po --- h5math --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5math h5math.o arrayh5.o h5utils.o -lmatheval -lhdf5 -lz -lm --- h5totxt --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5totxt h5totxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm --- writepng.o --- mv -f .deps/writepng.Tpo .deps/writepng.Po --- h5cyl2cart --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5cyl2cart h5cyl2cart.o arrayh5.o h5utils.o -lhdf5 -lz -lm --- h5topng.o --- mv -f .deps/h5topng.Tpo .deps/h5topng.Po --- h5topng --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5topng h5topng.o writepng.o arrayh5.o h5utils.o -lpng -lhdf5 -lz -lm --- h5tovtk.o --- mv -f .deps/h5tovtk.Tpo .deps/h5tovtk.Po --- h5tovtk --- cc -pipe -L/usr/local/lib -I/usr/local/include -lpthread -O2 -fno-strict-aliasing -o h5tovtk h5tovtk.o arrayh5.o h5utils.o -lhdf5 -lz -lm -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for h5utils-1.13.1 ===> Generating temporary packing list /bin/mkdir -p '/construction/science/h5utils/stage/usr/local/bin' install -s -m 555 h5totxt h5fromtxt h5tovtk h5math h5topng '/construction/science/h5utils/stage/usr/local/bin' /bin/mkdir -p '/construction/science/h5utils/stage/usr/local/man/man1' install -m 0644 doc/man/h5totxt.1 doc/man/h5fromtxt.1 doc/man/h5tovtk.1 doc/man/h5math.1 doc/man/h5topng.1 '/construction/science/h5utils/stage/usr/local/man/man1' /bin/mkdir -p '/construction/science/h5utils/stage/usr/local/share/h5utils' /bin/mkdir -p '/construction/science/h5utils/stage/usr/local/share/h5utils/colormaps' install -m 0644 colormaps/autumn colormaps/bluered colormaps/bone colormaps/colorcube colormaps/cool colormaps/copper colormaps/flag colormaps/gray colormaps/green colormaps/hot colormaps/hsv colormaps/jet colormaps/lines colormaps/pink colormaps/prism colormaps/spring colormaps/summer colormaps/vga colormaps/winter colormaps/yarg colormaps/yellow colormaps/dkbluered colormaps/viridis colormaps/inferno colormaps/RdBu colormaps/BrBG '/construction/science/h5utils/stage/usr/local/share/h5utils/colormaps' ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for h5utils-1.13.1 file sizes/checksums [40]: . done packing files [40]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 19 APR 2018 at 05:31:36 UTC Duration: 00:00:41