=> Building biology/py-biom-format@py36 Started : Wednesday, 18 APR 2018 at 02:15:14 UTC Platform: 5.3-DEVELOPMENT DragonFly v5.3.0.81.g32506c-DEVELOPMENT #29: Tue Apr 10 08:49:52 PDT 2018 marino@pkgbox64.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.0-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.0-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/biology/py-biom-format XDG_CONFIG_HOME=/construction/biology/py-biom-format HOME=/construction/biology/py-biom-format TMPDIR="/tmp" PATH=/construction/biology/py-biom-format/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc50 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-biom-format XDG_CONFIG_HOME=/construction/biology/py-biom-format HOME=/construction/biology/py-biom-format TMPDIR="/tmp" PATH=/construction/biology/py-biom-format/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc50 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/biology/py-biom-format/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/biom-format" EXAMPLESDIR="share/examples/biom-format" DATADIR="share/biom-format" WWWDIR="www/biom-format" ETCDIR="etc/biom-format" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biom-format DOCSDIR=/usr/local/share/doc/biom-format EXAMPLESDIR=/usr/local/share/examples/biom-format WWWDIR=/usr/local/www/biom-format ETCDIR=/usr/local/etc/biom-format -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=Release-5.0 USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=5 LICENSES_ACCEPTED= NONE HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _SMP_CPUS=8 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500000 OSVERSION=9999999 OSREL=5.0 _OSRELEASE=5.0-SYNTH -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-biom-format-2.1.6_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5.txz Installing pkg-1.10.5... Extracting pkg-1.10.5: .......... done ===> py36-biom-format-2.1.6_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-biom-format-2.1.6_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-biom-format-2.1.6_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-biom-format-2.1.6_2 for building => SHA256 Checksum OK for biocore-biom-format-2.1.6_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-biom-format-2.1.6_2 for building ===> Extracting for py36-biom-format-2.1.6_2 => SHA256 Checksum OK for biocore-biom-format-2.1.6_GH0.tar.gz. /bin/rm -f -r /construction/biology/py-biom-format/biom-format-2.1.6/tests -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-biom-format-2.1.6_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-biom-format-2.1.6_2 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.13.3_2,1.txz Installing py36-numpy-1.13.3_2,1... `-- Installing gcc5-5.5.0_2... | `-- Installing binutils-2.30_2,1... | | `-- Installing gettext-runtime-0.19.8.1_1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: .... done | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done | `-- Extracting binutils-2.30_2,1: .......... done | `-- Installing gmp-6.1.2... | `-- Extracting gmp-6.1.2: .......... done | `-- Installing mpc-1.1.0... | | `-- Installing mpfr-3.1.6... | | `-- Extracting mpfr-3.1.6: .......... done | `-- Extracting mpc-1.1.0: ...... done `-- Extracting gcc5-5.5.0_2: .......... done `-- Installing openblas-0.2.20_2,1... `-- Extracting openblas-0.2.20_2,1: ......... done `-- Installing py36-setuptools-39.0.1... | `-- Installing python36-3.6.5... | | `-- Installing expat-2.2.5... | | `-- Extracting expat-2.2.5: .......... done | | `-- Installing libffi-3.2.1_2... | | `-- Extracting libffi-3.2.1_2: .......... done | | `-- Installing libressl-2.6.4... | | `-- Extracting libressl-2.6.4: .......... done | | `-- Installing ncurses-6.0.0s20171223_1... | | `-- Extracting ncurses-6.0.0s20171223_1: .......... done | | `-- Installing readline-7.0.3_1... | | `-- Extracting readline-7.0.3_1: .......... done | `-- Extracting python36-3.6.5: .......... done `-- Extracting py36-setuptools-39.0.1: .......... done `-- Installing suitesparse-4.0.2_8... `-- Extracting suitesparse-4.0.2_8: .......... done Extracting py36-numpy-1.13.3_2,1: .......... done Message from gcc5-5.5.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 6 or newer instead.. Message from python36-3.6.5: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-39.0.1: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* ===> py36-biom-format-2.1.6_2 depends on package: py36-numpy>0 - found ===> Returning to build of py36-biom-format-2.1.6_2 ===> py36-biom-format-2.1.6_2 depends on package: py36-setuptools>0 - found ===> py36-biom-format-2.1.6_2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-biom-format-2.1.6_2 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-biom-format-2.1.6_2 running build running build_py creating build creating build/lib.dragonfly-5.0-SYNTH-x86_64-3.6 creating build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/parse.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/__init__.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/err.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/table.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/util.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/exception.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom creating build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/table_subsetter.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/util.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/table_validator.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/uc_processor.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/table_ids.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/table_head.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/table_converter.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/metadata_adder.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/table_normalizer.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/table_summarizer.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/installation_informer.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli copying biom/cli/__init__.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli running egg_info creating biom_format.egg-info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt writing manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' copying biom/_filter.c -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/_filter.pyx -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/_subsample.c -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/_subsample.pyx -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/_transform.c -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom copying biom/_transform.pyx -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom creating build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/assets copying biom/assets/exercise_api.py -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/assets copying biom/assets/exercise_cli.sh -> build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/assets running build_ext building 'biom._filter' extension creating build/temp.dragonfly-5.0-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.0-SYNTH-x86_64-3.6/biom cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c biom/_filter.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_filter.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_filter.c:435: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_filter.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_filter.so building 'biom._transform' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c biom/_transform.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_transform.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_transform.c:435: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_transform.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_transform.so building 'biom._subsample' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c biom/_subsample.c -o build/temp.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_subsample.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_subsample.c:435: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_subsample.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_subsample.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-biom-format-2.1.6_2 depends on package: py36-numpy>0 - found ===> py36-biom-format-2.1.6_2 depends on package: py36-click>=6.6 - not found ===> Installing existing package /packages/All/py36-click-6.7.txz Installing py36-click-6.7... Extracting py36-click-6.7: .......... done ===> py36-biom-format-2.1.6_2 depends on package: py36-click>=6.6 - found ===> Returning to build of py36-biom-format-2.1.6_2 ===> py36-biom-format-2.1.6_2 depends on package: py36-future>=0.15.2 - not found ===> Installing existing package /packages/All/py36-future-0.16.0.txz Installing py36-future-0.16.0... Extracting py36-future-0.16.0: .......... done ===> py36-biom-format-2.1.6_2 depends on package: py36-future>=0.15.2 - found ===> Returning to build of py36-biom-format-2.1.6_2 ===> py36-biom-format-2.1.6_2 depends on package: py36-pandas>0 - not found ===> Installing existing package /packages/All/py36-pandas-0.22.0_1.txz Installing py36-pandas-0.22.0_1... `-- Installing py36-bottleneck-1.2.1_3... `-- Extracting py36-bottleneck-1.2.1_3: .......... done `-- Installing py36-dateutil-2.6.1... | `-- Installing py36-six-1.11.0... | `-- Extracting py36-six-1.11.0: .......... done `-- Extracting py36-dateutil-2.6.1: .......... done `-- Installing py36-numexpr-2.6.4_1... `-- Extracting py36-numexpr-2.6.4_1: .......... done `-- Installing py36-pytz-2018.3,1... `-- Extracting py36-pytz-2018.3,1: .......... done `-- Installing py36-sqlite3-3.6.5_7... | `-- Installing sqlite3-3.22.0_1... | `-- Extracting sqlite3-3.22.0_1: .......... done `-- Extracting py36-sqlite3-3.6.5_7: ........ done Extracting py36-pandas-0.22.0_1: .......... done Message from py36-pandas-0.22.0_1: === If you wish, install math/py-statsmodels to enable parts of pandas.stats. === ===> py36-biom-format-2.1.6_2 depends on package: py36-pandas>0 - found ===> Returning to build of py36-biom-format-2.1.6_2 ===> py36-biom-format-2.1.6_2 depends on package: py36-h5py>=2.6.0 - not found ===> Installing existing package /packages/All/py36-h5py-2.7.1_1.txz Installing py36-h5py-2.7.1_1... `-- Installing hdf5-1.10.1_1... | `-- Installing hdf-szip-2.1_2... | `-- Extracting hdf-szip-2.1_2: ........ done `-- Extracting hdf5-1.10.1_1: .......... done Extracting py36-h5py-2.7.1_1: .......... done ===> py36-biom-format-2.1.6_2 depends on package: py36-h5py>=2.6.0 - found ===> Returning to build of py36-biom-format-2.1.6_2 ===> py36-biom-format-2.1.6_2 depends on package: py36-scipy>=0.16.1 - not found ===> Installing existing package /packages/All/py36-scipy-0.19.0_5.txz Installing py36-scipy-0.19.0_5... Extracting py36-scipy-0.19.0_5: .......... done ===> py36-biom-format-2.1.6_2 depends on package: py36-scipy>=0.16.1 - found ===> Returning to build of py36-biom-format-2.1.6_2 ===> py36-biom-format-2.1.6_2 depends on package: py36-setuptools>0 - found ===> py36-biom-format-2.1.6_2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-biom-format-2.1.6_2 ===> Generating temporary packing list running install running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' running build_ext running install_lib creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.6 creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/assets copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/assets/exercise_cli.sh -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/assets copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/assets/exercise_api.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/assets copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_transform.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_transform.c -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_subsample.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_subsample.c -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_filter.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_filter.c -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_transform.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_filter.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/_subsample.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/installation_informer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/table_summarizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/table_normalizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/metadata_adder.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/table_converter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/table_head.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/table_ids.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/uc_processor.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/table_validator.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/cli/table_subsetter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/exception.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/err.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom copying build/lib.dragonfly-5.0-SYNTH-x86_64-3.6/biom/parse.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/assets/exercise_api.py to exercise_api.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/installation_informer.py to installation_informer.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/table_converter.py to table_converter.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/table_head.py to table_head.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/table_ids.py to table_ids.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/uc_processor.py to uc_processor.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/table_validator.py to table_validator.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/util.py to util.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/exception.py to exception.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/util.py to util.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/table.py to table.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/err.py to err.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/parse.py to parse.cpython-36.pyc writing byte-compilation script '/tmp/tmp3q30mf3b.py' /usr/local/bin/python3.6 /tmp/tmp3q30mf3b.py removing /tmp/tmp3q30mf3b.py running install_egg_info Copying biom_format.egg-info to /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom_format-2.1.6-py3.6.egg-info running install_scripts Installing biom script to /construction/biology/py-biom-format/stage/usr/local/bin writing list of installed files to '/construction/biology/py-biom-format/.PLIST.pymodtmp' /usr/bin/strip /construction/biology/py-biom-format/stage/usr/local/lib/python3.6/site-packages/biom/*.so ====> Compressing man pages (compress-man) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-biom-format-2.1.6_2 file sizes/checksums [77]: . done packing files [77]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Wednesday, 18 APR 2018 at 02:16:25 UTC Duration: 00:01:11